RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W YMR034CQ05131 434 aaPredicted RBP3.97□□□□□ -1.77
UBP8YMR223W GSH2Q08220 491 aa3.97□□□□□ -1.77
UBP8YMR223W RPF2P36160 344 aaKnown RBP3.96□□□□□ -1.77
UBP8YMR223W TPA1P40032 644 aaKnown RBP3.96□□□□□ -1.77
UBP8YMR223W TPM2P40414 161 aa3.96□□□□□ -1.77
UBP8YMR223W YNL144CP53907 740 aa3.96□□□□□ -1.77
UBP8YMR223W YOL057WQ08225 711 aa3.96□□□□□ -1.77
UBP8YMR223W ILV2P07342 687 aaKnown RBP3.95□□□□□ -1.78
UBP8YMR223W GSH1P32477 678 aa3.95□□□□□ -1.78
UBP8YMR223W NIC96P34077 839 aa3.95□□□□□ -1.78
UBP8YMR223W RKM3P38222 552 aa3.95□□□□□ -1.78
UBP8YMR223W VRG4P40107 337 aa3.95□□□□□ -1.78
UBP8YMR223W PTC6P25646 442 aa3.95□□□□□ -1.78
UBP8YMR223W SWC3P31376 625 aa3.95□□□□□ -1.78
UBP8YMR223W MSS51P32335 436 aa3.95□□□□□ -1.78
UBP8YMR223W PCL6P40038 420 aa3.95□□□□□ -1.78
UBP8YMR223W VFA1P40080 203 aa3.95□□□□□ -1.78
UBP8YMR223W ACS1Q01574 713 aa3.95□□□□□ -1.78
UBP8YMR223W BRE1Q07457 700 aaKnown RBP3.95□□□□□ -1.78
UBP8YMR223W PEX15Q08215 383 aa3.95□□□□□ -1.78
UBP8YMR223W TOA1P32773 286 aa3.94□□□□□ -1.78
UBP8YMR223W RPS0BP46654 252 aaKnown RBP3.94□□□□□ -1.78
UBP8YMR223W YGL081WP53156 320 aa3.94□□□□□ -1.78
UBP8YMR223W CWC22P53333 577 aaKnown RBP3.94□□□□□ -1.78
UBP8YMR223W TRS31Q03337 283 aa3.94□□□□□ -1.78
UBP8YMR223W ECM16Q04217 1267 aaKnown RBP3.94□□□□□ -1.78
UBP8YMR223W YMR317WQ04893 1140 aa3.94□□□□□ -1.78
UBP8YMR223W LEA1Q08963 238 aaPredicted RBP3.94□□□□□ -1.78
UBP8YMR223W PSF3Q12146 194 aa3.94□□□□□ -1.78
UBP8YMR223W CTT1P06115 562 aa3.93□□□□□ -1.78
UBP8YMR223W SSB1P11484 613 aaKnown RBP3.93□□□□□ -1.78
UBP8YMR223W PRE2P30656 287 aaKnown RBP3.93□□□□□ -1.78
UBP8YMR223W HEM12P32347 362 aaPredicted RBP3.93□□□□□ -1.78
UBP8YMR223W GRX4P32642 244 aa3.93□□□□□ -1.78
UBP8YMR223W SSB2P40150 613 aaKnown RBP3.93□□□□□ -1.78
UBP8YMR223W UBP7P40453 1071 aa3.93□□□□□ -1.78
UBP8YMR223W SAD1P43589 448 aa3.93□□□□□ -1.78
UBP8YMR223W BET4Q00618 327 aa3.93□□□□□ -1.78
UBP8YMR223W TRE2Q08693 809 aa3.93□□□□□ -1.78
UBP8YMR223W YBR255C-AQ3E776 120 aa3.93□□□□□ -1.78
UBP8YMR223W MPE1P35728 441 aaKnown RBP3.92□□□□□ -1.78
UBP8YMR223W TAF5P38129 798 aa3.92□□□□□ -1.78
UBP8YMR223W CRF1Q04930 467 aa3.92□□□□□ -1.78
UBP8YMR223W RTT103Q05543 409 aa3.92□□□□□ -1.78
UBP8YMR223W THI3Q07471 609 aa3.92□□□□□ -1.78
UBP8YMR223W YDL121CQ07541 149 aa3.92□□□□□ -1.78
UBP8YMR223W GPN2Q08726 347 aaPredicted RBP3.92□□□□□ -1.78
UBP8YMR223W HIF1Q12373 385 aa3.92□□□□□ -1.78
UBP8YMR223W DBP10Q12389 995 aaKnown RBP3.92□□□□□ -1.78
UBP8YMR223W SIP1P32578 815 aa3.91□□□□□ -1.78
UBP8YMR223W OCT1P35999 772 aa3.91□□□□□ -1.78
UBP8YMR223W ERC1P38767 581 aa3.91□□□□□ -1.78
UBP8YMR223W SKP2P42843 763 aa3.91□□□□□ -1.78
UBP8YMR223W NOP1P15646 327 aaKnown RBP3.9□□□□□ -1.78
UBP8YMR223W PDE1P22434 369 aa3.9□□□□□ -1.78
UBP8YMR223W PPZ1P26570 692 aa3.9□□□□□ -1.78
UBP8YMR223W YLF2P38746 405 aa3.9□□□□□ -1.78
UBP8YMR223W ERP2P39704 215 aa3.9□□□□□ -1.78
UBP8YMR223W POL31P46957 487 aa3.9□□□□□ -1.78
UBP8YMR223W EAF7P53911 425 aaKnown RBP3.9□□□□□ -1.78
UBP8YMR223W PDR8Q06149 701 aa3.9□□□□□ -1.78
UBP8YMR223W FMP46P36141 133 aaKnown RBP3.89□□□□□ -1.79
UBP8YMR223W ARB1P40024 610 aaKnown RBP3.89□□□□□ -1.79
UBP8YMR223W CDC1P40986 491 aa3.89□□□□□ -1.79
UBP8YMR223W VPS25P47142 202 aa3.89□□□□□ -1.79
UBP8YMR223W PUS4P48567 403 aaKnown RBP3.89□□□□□ -1.79
UBP8YMR223W ECM38Q05902 660 aaPredicted RBP3.89□□□□□ -1.79
UBP8YMR223W CRD1Q07560 283 aa3.89□□□□□ -1.79
UBP8YMR223W VPS41P38959 992 aa3.88□□□□□ -1.79
UBP8YMR223W RPT2P40327 437 aaKnown RBP3.88□□□□□ -1.79
UBP8YMR223W QRI7P43122 407 aa3.88□□□□□ -1.79
UBP8YMR223W UBP8P50102 471 aa3.88□□□□□ -1.79
UBP8YMR223W SVL3Q03088 825 aaKnown RBP3.88□□□□□ -1.79
UBP8YMR223W GIR2Q03768 265 aaPredicted RBP3.88□□□□□ -1.79
UBP8YMR223W CAC2Q04199 468 aa3.88□□□□□ -1.79
UBP8YMR223W ECI1Q05871 280 aa3.88□□□□□ -1.79
UBP8YMR223W PIG1Q06216 648 aa3.88□□□□□ -1.79
UBP8YMR223W SLX4Q12098 748 aa3.88□□□□□ -1.79
UBP8YMR223W TGL1P34163 548 aa3.87□□□□□ -1.79
UBP8YMR223W YND1P40009 630 aa3.87□□□□□ -1.79
UBP8YMR223W HOS2P53096 452 aaPredicted RBP3.87□□□□□ -1.79
UBP8YMR223W VPS64Q03944 604 aa3.87□□□□□ -1.79
UBP8YMR223W SWF1Q04629 336 aa3.87□□□□□ -1.79
UBP8YMR223W VAS1P07806 1104 aaKnown RBP3.87□□□□□ -1.79
UBP8YMR223W RPL42AP0CX27 106 aaKnown RBP3.87□□□□□ -1.79
UBP8YMR223W RPL42BP0CX28 106 aaKnown RBP3.87□□□□□ -1.79
UBP8YMR223W SDS22P36047 338 aa3.87□□□□□ -1.79
UBP8YMR223W YBR071WP38243 211 aa3.87□□□□□ -1.79
UBP8YMR223W NPA3P47122 385 aa3.87□□□□□ -1.79
UBP8YMR223W DIG1Q03063 452 aaKnown RBP3.87□□□□□ -1.79
UBP8YMR223W TMA64Q04600 565 aaKnown RBP3.87□□□□□ -1.79
UBP8YMR223W FMP42Q04991 504 aa3.87□□□□□ -1.79
UBP8YMR223W POS5Q06892 414 aa3.87□□□□□ -1.79
UBP8YMR223W AIM6Q07716 390 aa3.87□□□□□ -1.79
UBP8YMR223W MCH4Q08268 501 aa3.87□□□□□ -1.79
UBP8YMR223W KAR1P11927 433 aa3.86□□□□□ -1.79
UBP8YMR223W LAC1P28496 418 aa3.86□□□□□ -1.79
UBP8YMR223W MNN2P38069 597 aa3.86□□□□□ -1.79
UBP8YMR223W FUI1P38196 639 aa3.86□□□□□ -1.79
UBP8YMR223W BZZ1P38822 633 aa3.86□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms