RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	NOP6	Q07623	225 aa	Known RBP	3.92	□□□□□ -1.78
NUP85	YJR042W	RRT8	Q08219	342 aa		3.92	□□□□□ -1.78
NUP85	YJR042W	ACM1	Q08981	209 aa		3.92	□□□□□ -1.78
NUP85	YJR042W	YPL272C	Q08984	517 aa		3.92	□□□□□ -1.78
NUP85	YJR042W	LSP1	Q12230	341 aa	Known RBP	3.92	□□□□□ -1.78
NUP85	YJR042W	RPN5	Q12250	445 aa	Known RBP	3.92	□□□□□ -1.78
NUP85	YJR042W	YIL177C	P40434	1758 aa		3.92	□□□□□ -1.78
NUP85	YJR042W	YJL225C	P40889	1758 aa		3.92	□□□□□ -1.78
NUP85	YJR042W	RPS17A	P02407	136 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	STE12	P13574	688 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	RPS17B	P14127	136 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	DIT1	P21623	536 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	IMG2	P25642	146 aa	Predicted RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	ARP2	P32381	391 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	SFA1	P32771	386 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	YME1	P32795	747 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	MDL2	P33311	773 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	ARL1	P38116	183 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	QNS1	P38795	714 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	FLC2	P39719	783 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	YER158C	P40095	573 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	PRM2	P40534	656 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	MET28	P40573	187 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	ARC1	P46672	376 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	MSB3	P48566	633 aa	Predicted RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	FCP1	Q03254	732 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	ABZ2	Q03266	374 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	RAD30	Q04049	632 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	MDY2	Q12285	212 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	FKS3	Q04952	1785 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	URA3	P03962	267 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	CTT1	P06115	562 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	ARG1	P22768	420 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	SWH1	P35845	1188 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	FLR1	P38124	548 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	PTC2	P39966	464 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	YER034W	P40022	185 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	MKT1	P40850	830 aa	Known RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	NIT3	P49954	291 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	YNL050C	P53952	270 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	RPA49	Q01080	415 aa	Predicted RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	MEC3	Q02574	474 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	RRN5	Q02983	363 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	CRR1	Q05790	422 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	YSH1	Q06224	779 aa	Predicted RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	AAD4	Q07747	329 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	CLP1	Q08685	445 aa	Predicted RBP	3.91	□□□□□ -1.78
NUP85	YJR042W	GPB1	Q08886	897 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	YPL260W	Q08977	551 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	COX17	Q12287	69 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	EDE1	P34216	1381 aa		3.91	□□□□□ -1.78
NUP85	YJR042W	YLR358C	O13565	187 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	CBS1	P14066	229 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	SNF5	P18480	905 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	AFT1	P22149	690 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	RSC6	P25632	483 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	SRP101	P32916	621 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	YPT7	P32939	208 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	ARC19	P33204	171 aa	Known RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	PEX32	P38292	413 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	CCT6	P39079	546 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.9	□□□□□ -1.78	not detected
NUP85	YJR042W	PDR16	P53860	351 aa	Known RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	INN1	P53901	409 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	REG1	Q00816	1014 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	MAK10	Q02197	733 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	ASM4	Q05166	528 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	KAP95	Q06142	861 aa	Known RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	SPH1	Q06160	661 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	DIB1	Q06819	143 aa	Predicted RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	RCL1	Q08096	367 aa	Predicted RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	ALG6	Q12001	544 aa	Known RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	YLL058W	Q12198	575 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	SUL2	Q12325	893 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	YBR126W-A	Q8TGU7	68 aa		3.9	□□□□□ -1.78
NUP85	YJR042W	URB1	P34241	1764 aa	Known RBP	3.9	□□□□□ -1.78
NUP85	YJR042W	DGR2	P32330	852 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	SPC110	P32380	944 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	YBL028C	P38202	106 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	YAR028W	P39548	234 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	ATF1	P40353	525 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	ROK1	P45818	564 aa	Predicted RBP	3.9	□□□□□ -1.79
NUP85	YJR042W	NUP85	P46673	744 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	YDL183C	P48569	320 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	ALT2	P52892	507 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	RPT6	Q01939	405 aa	Known RBP	3.9	□□□□□ -1.79
NUP85	YJR042W	NGL2	Q03264	515 aa	Known RBP	3.9	□□□□□ -1.79
NUP85	YJR042W	ECM18	Q04623	453 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	RSA3	Q05942	220 aa	Known RBP	3.9	□□□□□ -1.79
NUP85	YJR042W	YLR456W	Q06199	204 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	XYL2	Q07993	356 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	MET32	Q12041	191 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	TY3A-G	Q12173	290 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	ZRT2	Q12436	422 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	TY3A-I	Q99219	290 aa		3.9	□□□□□ -1.79
NUP85	YJR042W	DIF1	O13577	133 aa		3.89	□□□□□ -1.79
NUP85	YJR042W	RPS24A	P0CX31	135 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	RPS24B	P0CX32	135 aa	Known RBP	3.89	□□□□□ -1.79
NUP85	YJR042W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.89	□□□□□ -1.79	not detected
NUP85	YJR042W	OCA4	P25366	362 aa		3.89	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms