RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	IDS2	P46958	469 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	COS12	P53053	380 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	FHN1	P53279	174 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	CBK1	P53894	756 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	RNT1	Q02555	471 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	IZH3	Q07959	543 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	PCD1	Q12524	340 aa		5.32	□□□□□ -1.56
CAF16	YFL028C	SNF2	P22082	1703 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	SIR4	P11978	1358 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	SAN1	P22470	610 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	HCM1	P25364	564 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	FUB1	P25659	250 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	CNS1	P33313	385 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	MRPL7	P36519	292 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	SUL1	P38359	859 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	YHR097C	P38809	366 aa	Known RBP	5.31	□□□□□ -1.56
CAF16	YFL028C	AVT1	P47082	602 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	ESF2	P53743	316 aa	Known RBP	5.31	□□□□□ -1.56
CAF16	YFL028C	YDL086W	Q07505	273 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	AIM6	Q07716	390 aa		5.31	□□□□□ -1.56
CAF16	YFL028C	RPO41	P13433	1351 aa	Known RBP	5.3	□□□□□ -1.56
CAF16	YFL028C	SPT7	P35177	1332 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	PET122	P10355	254 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	ARB1	P40024	610 aa	Known RBP	5.3	□□□□□ -1.56
CAF16	YFL028C	BST1	P43571	1029 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	ZAP1	P47043	880 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	TEL2	P53038	688 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	SNO4	Q04902	237 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	YSH1	Q06224	779 aa	Predicted RBP	5.3	□□□□□ -1.56
CAF16	YFL028C	YLR040C	Q07988	224 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	HSP33	Q08914	237 aa	Known RBP	5.3	□□□□□ -1.56
CAF16	YFL028C	HSP32	Q08992	237 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	SUL2	Q12325	893 aa		5.3	□□□□□ -1.56
CAF16	YFL028C	ABF1	P14164	731 aa		5.29	□□□□□ -1.56
CAF16	YFL028C	AIM21	P40563	679 aa		5.29	□□□□□ -1.56
CAF16	YFL028C	YGR151C	P53287	111 aa		5.29	□□□□□ -1.56
CAF16	YFL028C	MFM1	Q02783	413 aa		5.29	□□□□□ -1.56
CAF16	YFL028C	YPL108W	Q02872	168 aa	Predicted RBP	5.29	□□□□□ -1.56
CAF16	YFL028C	EFR3	Q03653	782 aa	Known RBP	5.29	□□□□□ -1.56
CAF16	YFL028C	MED1	Q12321	566 aa		5.29	□□□□□ -1.56
CAF16	YFL028C	YRF1-4	O13559	1382 aa		5.29	□□□□□ -1.56
CAF16	YFL028C	PPR1	P07272	904 aa	Predicted RBP	5.28	□□□□□ -1.56
CAF16	YFL028C	BIK1	P11709	440 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	AAC3	P18238	307 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	CTS1	P29029	562 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	GCD7	P32502	381 aa	Predicted RBP	5.28	□□□□□ -1.56
CAF16	YFL028C	PAH1	P32567	862 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	PPS1	P38148	807 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	RPN11	P43588	306 aa	Known RBP	5.28	□□□□□ -1.56
CAF16	YFL028C	PSP1	P50896	841 aa	Known RBP	5.28	□□□□□ -1.56
CAF16	YFL028C	COG1	P53079	417 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	NMA2	P53204	395 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	TAM41	P53230	385 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	YAP1802	P53309	568 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	DIP5	P53388	608 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	CRF1	Q04930	467 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	TSR2	Q06672	205 aa	Known RBP	5.28	□□□□□ -1.56
CAF16	YFL028C	NTO1	Q12311	748 aa		5.28	□□□□□ -1.56
CAF16	YFL028C	VPS34	P22543	875 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	CAP1	P28495	268 aa	Known RBP	5.27	□□□□□ -1.57
CAF16	YFL028C	SWC3	P31376	625 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	IMP2'	P32351	346 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	DEF1	P35732	738 aa	Known RBP	5.27	□□□□□ -1.57
CAF16	YFL028C	JNM1	P36224	373 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	RIC1	P40395	1056 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	ADE16	P54113	591 aa	Known RBP	5.27	□□□□□ -1.57
CAF16	YFL028C	RTP1	Q12751	981 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	EDE1	P34216	1381 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	RIM15	P43565	1770 aa		5.27	□□□□□ -1.57
CAF16	YFL028C	YLR302C	O13544	120 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	FUM1	P08417	488 aa	Known RBP	5.26	□□□□□ -1.57
CAF16	YFL028C	ELM1	P32801	640 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	APL3	P38065	1025 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	KSP1	P38691	1029 aa	Known RBP	5.26	□□□□□ -1.57
CAF16	YFL028C	VPS8	P39702	1274 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	NPR2	P39923	615 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	LYS14	P40971	790 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	SKP2	P42843	763 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	RRP46	P53256	223 aa	Predicted RBP	5.26	□□□□□ -1.57
CAF16	YFL028C	UFO1	Q04511	668 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	STP3	Q05937	343 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	RKI1	Q12189	258 aa		5.26	□□□□□ -1.57
CAF16	YFL028C	PNO1	Q99216	274 aa	Known RBP	5.26	□□□□□ -1.57
CAF16	YFL028C	ATP2	P00830	511 aa	Known RBP	5.25	□□□□□ -1.57
CAF16	YFL028C	CDC16	P09798	840 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	CBF2	P32504	956 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	NUP120	P35729	1037 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	CBR1	P38626	284 aa	Known RBP	5.25	□□□□□ -1.57
CAF16	YFL028C	PCL5	P38794	229 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	NOP16	P40007	231 aa	Known RBP	5.25	□□□□□ -1.57
CAF16	YFL028C	ESL1	P40456	1118 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	UPF3	P48412	387 aa	Known RBP	5.25	□□□□□ -1.57
CAF16	YFL028C	DSD1	P53095	428 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	SSL2	Q00578	843 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	TRS23	Q03784	219 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	YOL073C	Q08232	322 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	YPL216W	Q08964	1102 aa		5.25	□□□□□ -1.57
CAF16	YFL028C	TY2A-LR1	P0C2J4	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-F	P0CX61	438 aa		5.24	□□□□□ -1.57
CAF16	YFL028C	TY2A-GR2	P0CX62	438 aa		5.24	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 33.4 ms