RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Gm26620Q9CY65 116 aa6.44□□□□□ -1.38
Ccdc40-201ENSMUST00000035935 Anapc11Q9CPX9 84 aa6.44□□□□□ -1.38
Ccdc40-201ENSMUST00000035935 Stab1Q8R4Y4 2571 aa6.43□□□□□ -1.38
Ccdc40-201ENSMUST00000035935 Prrc2cQ3TLH4 2846 aaKnown RBP6.43□□□□□ -1.38
Ccdc40-201ENSMUST00000035935 Nsd1O88491 2588 aaKnown RBP6.42□□□□□ -1.38
Ccdc40-201ENSMUST00000035935 Defb1P56386 69 aa6.41□□□□□ -1.38
Ccdc40-201ENSMUST00000035935 Odf3bQ5M8M2 238 aa6.39□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 A730071L15RikQ8C4X0 137 aa6.39□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Mast4Q811L6 2618 aa6.39□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Notch1Q01705 2531 aa6.38□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Cdh23Q99PF4 3354 aa6.37□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Cystm1Q8K353 104 aa6.37□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Igsf10Q3V1M1 2594 aa6.35□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 6030445D17RikE9Q8F9 148 aa6.35□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Fn1P11276 2477 aaKnown RBP6.35□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Itpr3P70227 2670 aa6.35□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 NipblQ6KCD5 2798 aaKnown RBP6.34□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 Gm7137J3QMW1 236 aa6.34□□□□□ -1.39
Ccdc40-201ENSMUST00000035935 2310034C09RikQ9D746 214 aa6.34□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Muc2Q80Z19 2680 aa6.33□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Gm37013Q8K491 104 aa6.32□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Gm17349F7BGH6 99 aa6.3□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Gm21798J3QNU5 87 aa6.3□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Gm16253D3Z167 63 aa6.3□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Ash1lQ99MY8 2958 aa6.29□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Bod1lE9Q6J5 3032 aa6.28□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 AtmQ62388 3066 aa6.27□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Szt2A2A9C3 3431 aa6.27□□□□□ -1.4
Ccdc40-201ENSMUST00000035935 Rnase13Q5GAM7 153 aa6.27□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Unc80Q8BLN6 3261 aa6.27□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Gm36176A0A1W2P8D5 158 aa6.27□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Krtap29-1A2A5X4 342 aa6.27□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Ubr5Q80TP3 2792 aa6.26□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Chd6A3KFM7 2711 aa6.24□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Cfap54Q8C6S9 3106 aa6.24□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 AspmQ8CJ27 3122 aa6.23□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Vps13aQ5H8C4 3166 aa6.22□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Mp68P56379 58 aa6.22□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Col6a5A6H584 2640 aa6.21□□□□□ -1.41
Ccdc40-201ENSMUST00000035935 Lrrc37aB1AWG4 3215 aa6.2□□□□□ -1.42
Ccdc40-201ENSMUST00000035935 Gm4491E0CX42 125 aa6.19□□□□□ -1.42
Ccdc40-201ENSMUST00000035935 Kmt2bO08550 2713 aa6.16□□□□□ -1.42
Ccdc40-201ENSMUST00000035935 Gm9955Q8CEJ8 102 aa6.16□□□□□ -1.42
Ccdc40-201ENSMUST00000035935 Gm9821Q8K076 103 aa6.15□□□□□ -1.42
Ccdc40-201ENSMUST00000035935 Tep1P97499 2629 aa6.14□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 FryE9Q8I9 3020 aa6.14□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 2310061N02RikQ9D6S9 174 aa6.14□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Wdfy3Q6VNB8 3508 aa6.13□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Hivep1Q03172 2688 aa6.13□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 SmcpP15265 143 aa6.13□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Ranbp2Q9ERU9 3053 aaKnown RBP6.13□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Wdfy4E9Q2M9 3149 aa6.13□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Gm9508A0A1W2P7W0 230 aa6.13□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Nbeal2Q6ZQA0 2742 aa6.11□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 HrnrQ8VHD8 2496 aa6.11□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 NbeaQ9EPN1 2936 aa6.1□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Pkd1l1Q8R526 2615 aa6.09□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Gm2310J3QNJ2 377 aa6.09□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 9530053A07RikE9PVG8 2581 aa6.09□□□□□ -1.43
Ccdc40-201ENSMUST00000035935 Celsr1O35161 3034 aa6.06□□□□□ -1.44
Ccdc40-201ENSMUST00000035935 Dmxl2Q8BPN8 3032 aa6.06□□□□□ -1.44
Ccdc40-201ENSMUST00000035935 Itpr2Q9Z329 2701 aa6.04□□□□□ -1.44
Ccdc40-201ENSMUST00000035935 Stab2Q8R4U0 2559 aa6.03□□□□□ -1.44
Ccdc40-201ENSMUST00000035935 DspE9Q557 2883 aaKnown RBP6.02□□□□□ -1.44
Ccdc40-201ENSMUST00000035935 Utp20Q5XG71 2788 aaKnown RBP6.02□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 FrylF8VQ05 3007 aa6.02□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Zfhx3Q61329 3726 aa6.02□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Gm3646F6S692 53 aa6.02□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 2310050C09RikG5E8Z3 280 aa6.02□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Tnp2P11378 117 aa6.01□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Gm3880A0A1B0GSB3 72 aa6.01□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Rps29P62274 56 aa6.01□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Krtap14O08640 167 aa6□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Igfn1Q3KNY0 2849 aa6□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 4933415A04RikQ9D443 101 aa6□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 BptfA2A654 3036 aaKnown RBP6□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 CriptO70333 101 aa5.99□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Gm5767A0A0J9YTU8 78 aa5.99□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Lama1P19137 3084 aa5.98□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 FlncQ8VHX6 2726 aaKnown RBP5.97□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Krtap13O88375 197 aa5.96□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Krtap15-1Q9QZU5 150 aa5.96□□□□□ -1.45
Ccdc40-201ENSMUST00000035935 Brca2P97929 3329 aa5.96□□□□□ -1.46
Ccdc40-201ENSMUST00000035935 Tenm4Q3UHK6 2771 aa5.95□□□□□ -1.46
Ccdc40-201ENSMUST00000035935 Gm9507D3Z5T3 223 aa5.95□□□□□ -1.46
Ccdc40-201ENSMUST00000035935 Adgrg4B7ZCC9 3073 aa5.95□□□□□ -1.46
Ccdc40-201ENSMUST00000035935 Myo15aQ9QZZ4 3511 aa5.92□□□□□ -1.46
Ccdc40-201ENSMUST00000035935 Dchs2A0A0A6YW72 3346 aa5.91□□□□□ -1.46
Ccdc40-201ENSMUST00000035935 Sec61bQ9CQS8 96 aaKnown RBP5.88□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Col6a3E9PWQ3 3284 aa5.87□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Gm20538F6Z9R1 75 aa5.87□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Tex15F8VPN2 2785 aa5.87□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Frem2Q6NVD0 3160 aa5.87□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 VcanQ62059 3357 aa5.85□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Celsr3Q91ZI0 3301 aa5.85□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Fam229aB2KGE5 128 aa5.85□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 1700042G07RikB1AUF7 90 aa5.85□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Spink7Q6IE32 76 aa5.84□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 Rpl37Q9D823 97 aa5.84□□□□□ -1.47
Ccdc40-201ENSMUST00000035935 DmdP11531 3678 aa5.83□□□□□ -1.48
Retrieved 100 of 22,080 RNA–protein pairs in 14.1 ms