Protein–RNA interactions for Protein: Q9CQS8

Sec61b, Protein transport protein Sec61 subunit beta, mousemouse

Known RBP Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sec61bQ9CQS8 Gm25239-201ENSMUST00000174915 86 ntBASIC20.65■□□□□ 0.9
Sec61bQ9CQS8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Sec61bQ9CQS8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sec61bQ9CQS8 Gm15042-201ENSMUST00000120212 883 ntBASIC18.05■□□□□ 0.48
Sec61bQ9CQS8 Gm24109-201ENSMUST00000175489 103 ntBASIC17.92■□□□□ 0.46
Sec61bQ9CQS8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sec61bQ9CQS8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Sec61bQ9CQS8 Gm15045-201ENSMUST00000117359 883 ntBASIC17.53■□□□□ 0.4
Sec61bQ9CQS8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sec61bQ9CQS8 Gm23366-201ENSMUST00000175022 89 ntBASIC17.33■□□□□ 0.36
Sec61bQ9CQS8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sec61bQ9CQS8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sec61bQ9CQS8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Sec61bQ9CQS8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sec61bQ9CQS8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Sec61bQ9CQS8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC16.7■□□□□ 0.26
Sec61bQ9CQS8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Sec61bQ9CQS8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Sec61bQ9CQS8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC16.53■□□□□ 0.24
Sec61bQ9CQS8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sec61bQ9CQS8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Sec61bQ9CQS8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC16.44■□□□□ 0.22
Sec61bQ9CQS8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Sec61bQ9CQS8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC16.4■□□□□ 0.22
Sec61bQ9CQS8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Sec61bQ9CQS8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Sec61bQ9CQS8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Sec61bQ9CQS8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61bQ9CQS8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61bQ9CQS8 Gm25238-201ENSMUST00000174914 89 ntBASIC16.26■□□□□ 0.19
Sec61bQ9CQS8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Sec61bQ9CQS8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Sec61bQ9CQS8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Sec61bQ9CQS8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC16.09■□□□□ 0.17
Sec61bQ9CQS8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
Sec61bQ9CQS8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Sec61bQ9CQS8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Sec61bQ9CQS8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC15.93■□□□□ 0.14
Sec61bQ9CQS8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Sec61bQ9CQS8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC15.9■□□□□ 0.14
Sec61bQ9CQS8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Sec61bQ9CQS8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Sec61bQ9CQS8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC15.82■□□□□ 0.12
Sec61bQ9CQS8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC15.8■□□□□ 0.12
Sec61bQ9CQS8 Gm27325-201ENSMUST00000175467 74 ntBASIC15.77■□□□□ 0.12
Sec61bQ9CQS8 Gm25262-201ENSMUST00000174934 133 ntBASIC15.75■□□□□ 0.11
Sec61bQ9CQS8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Sec61bQ9CQS8 Psd-208ENSMUST00000224556 2034 ntBASIC15.64■□□□□ 0.09
Sec61bQ9CQS8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sec61bQ9CQS8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC15.59■□□□□ 0.09
Sec61bQ9CQS8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Sec61bQ9CQS8 Rab21-202ENSMUST00000218831 843 ntBASIC15.58■□□□□ 0.08
Sec61bQ9CQS8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Sec61bQ9CQS8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC15.55■□□□□ 0.08
Sec61bQ9CQS8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sec61bQ9CQS8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Sec61bQ9CQS8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC15.52■□□□□ 0.08
Sec61bQ9CQS8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC15.51■□□□□ 0.07
Sec61bQ9CQS8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sec61bQ9CQS8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Sec61bQ9CQS8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC15.45■□□□□ 0.06
Sec61bQ9CQS8 Gm26115-201ENSMUST00000175605 87 ntBASIC15.39■□□□□ 0.05
Sec61bQ9CQS8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Sec61bQ9CQS8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Sec61bQ9CQS8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sec61bQ9CQS8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Sec61bQ9CQS8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC15.29■□□□□ 0.04
Sec61bQ9CQS8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sec61bQ9CQS8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sec61bQ9CQS8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC15.27■□□□□ 0.04
Sec61bQ9CQS8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Sec61bQ9CQS8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Sec61bQ9CQS8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
Sec61bQ9CQS8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Sec61bQ9CQS8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Sec61bQ9CQS8 Gm8109-201ENSMUST00000194076 746 ntBASIC15.21■□□□□ 0.03
Sec61bQ9CQS8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC15.21■□□□□ 0.03
Sec61bQ9CQS8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Sec61bQ9CQS8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Sec61bQ9CQS8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Sec61bQ9CQS8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC15.18■□□□□ 0.02
Sec61bQ9CQS8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sec61bQ9CQS8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sec61bQ9CQS8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sec61bQ9CQS8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Sec61bQ9CQS8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sec61bQ9CQS8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Sec61bQ9CQS8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC15.12■□□□□ 0.01
Sec61bQ9CQS8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sec61bQ9CQS8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Sec61bQ9CQS8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Sec61bQ9CQS8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC15.04■□□□□ -0
Sec61bQ9CQS8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Sec61bQ9CQS8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Sec61bQ9CQS8 Gm10524-201ENSMUST00000181931 1893 ntBASIC15□□□□□ -0.01
Sec61bQ9CQS8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sec61bQ9CQS8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sec61bQ9CQS8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC14.96□□□□□ -0.01
Sec61bQ9CQS8 Gm17082-201ENSMUST00000166043 1091 ntBASIC14.95□□□□□ -0.02
Sec61bQ9CQS8 Gm27322-201ENSMUST00000184007 104 ntBASIC14.93□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms