Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Gm25239-201ENSMUST00000174915 86 ntBASIC31,8■■■□□ 2,68
Col6a5A6H584 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29,56■■■□□ 2,32
Col6a5A6H584 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29,24■■■□□ 2,27
Col6a5A6H584 Gm24109-201ENSMUST00000175489 103 ntBASIC28,05■■■□□ 2,08
Col6a5A6H584 Gm15042-201ENSMUST00000120212 883 ntBASIC26,89■■□□□ 1,9
Col6a5A6H584 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26,86■■□□□ 1,89
Col6a5A6H584 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26,86■■□□□ 1,89
Col6a5A6H584 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26,68■■□□□ 1,86
Col6a5A6H584 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26,34■■□□□ 1,81
Col6a5A6H584 Gm15045-201ENSMUST00000117359 883 ntBASIC26,29■■□□□ 1,8
Col6a5A6H584 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26,24■■□□□ 1,79
Col6a5A6H584 Gm23366-201ENSMUST00000175022 89 ntBASIC26,22■■□□□ 1,79
Col6a5A6H584 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26,18■■□□□ 1,78
Col6a5A6H584 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC26,11■■□□□ 1,77
Col6a5A6H584 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26,06■■□□□ 1,76
Col6a5A6H584 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26,03■■□□□ 1,76
Col6a5A6H584 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25,52■■□□□ 1,68
Col6a5A6H584 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25,49■■□□□ 1,67
Col6a5A6H584 Gm25238-201ENSMUST00000174914 89 ntBASIC25,33■■□□□ 1,65
Col6a5A6H584 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC25,21■■□□□ 1,63
Col6a5A6H584 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25,13■■□□□ 1,61
Col6a5A6H584 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24,88■■□□□ 1,57
Col6a5A6H584 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24,78■■□□□ 1,56
Col6a5A6H584 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24,72■■□□□ 1,55
Col6a5A6H584 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC24,63■■□□□ 1,53
Col6a5A6H584 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24,63■■□□□ 1,53
Col6a5A6H584 Gm25262-201ENSMUST00000174934 133 ntBASIC24,61■■□□□ 1,53
Col6a5A6H584 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24,45■■□□□ 1,5
Col6a5A6H584 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC24,38■■□□□ 1,49
Col6a5A6H584 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC24,31■■□□□ 1,48
Col6a5A6H584 Gm26115-201ENSMUST00000175605 87 ntBASIC24,25■■□□□ 1,47
Col6a5A6H584 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC24,16■■□□□ 1,46
Col6a5A6H584 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC24,12■■□□□ 1,45
Col6a5A6H584 Gm8109-201ENSMUST00000194076 746 ntBASIC24,1■■□□□ 1,45
Col6a5A6H584 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC24■■□□□ 1,43
Col6a5A6H584 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24■■□□□ 1,43
Col6a5A6H584 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC23,98■■□□□ 1,43
Col6a5A6H584 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC23,93■■□□□ 1,42
Col6a5A6H584 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23,84■■□□□ 1,41
Col6a5A6H584 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23,83■■□□□ 1,41
Col6a5A6H584 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC23,8■■□□□ 1,4
Col6a5A6H584 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23,71■■□□□ 1,39
Col6a5A6H584 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23,67■■□□□ 1,38
Col6a5A6H584 Gm27325-201ENSMUST00000175467 74 ntBASIC23,63■■□□□ 1,37
Col6a5A6H584 Rab21-202ENSMUST00000218831 843 ntBASIC23,61■■□□□ 1,37
Col6a5A6H584 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23,57■■□□□ 1,36
Col6a5A6H584 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23,54■■□□□ 1,36
Col6a5A6H584 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23,47■■□□□ 1,35
Col6a5A6H584 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC23,45■■□□□ 1,34
Col6a5A6H584 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23,44■■□□□ 1,34
Col6a5A6H584 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23,4■■□□□ 1,34
Col6a5A6H584 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23,38■■□□□ 1,33
Col6a5A6H584 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23,36■■□□□ 1,33
Col6a5A6H584 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23,31■■□□□ 1,32
Col6a5A6H584 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23,3■■□□□ 1,32
Col6a5A6H584 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23,27■■□□□ 1,32
Col6a5A6H584 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23,23■■□□□ 1,31
Col6a5A6H584 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23,22■■□□□ 1,31
Col6a5A6H584 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC23,22■■□□□ 1,31
Col6a5A6H584 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23,21■■□□□ 1,31
Col6a5A6H584 Gm24804-201ENSMUST00000174982 85 ntBASIC23,21■■□□□ 1,31
Col6a5A6H584 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23,19■■□□□ 1,3
Col6a5A6H584 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC23,13■■□□□ 1,29
Col6a5A6H584 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23,12■■□□□ 1,29
Col6a5A6H584 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23,1■■□□□ 1,29
Col6a5A6H584 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23,05■■□□□ 1,28
Col6a5A6H584 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC23,01■■□□□ 1,27
Col6a5A6H584 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC23,01■■□□□ 1,27
Col6a5A6H584 Gm17082-201ENSMUST00000166043 1091 ntBASIC22,98■■□□□ 1,27
Col6a5A6H584 Zfp131-205ENSMUST00000223812 663 ntBASIC22,96■■□□□ 1,27
Col6a5A6H584 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22,95■■□□□ 1,26
Col6a5A6H584 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22,95■■□□□ 1,26
Col6a5A6H584 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22,93■■□□□ 1,26
Col6a5A6H584 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22,89■■□□□ 1,26
Col6a5A6H584 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC22,89■■□□□ 1,25
Col6a5A6H584 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC22,78■■□□□ 1,24
Col6a5A6H584 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22,74■■□□□ 1,23
Col6a5A6H584 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC22,73■■□□□ 1,23
Col6a5A6H584 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22,73■■□□□ 1,23
Col6a5A6H584 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22,73■■□□□ 1,23
Col6a5A6H584 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22,69■■□□□ 1,22
Col6a5A6H584 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22,69■■□□□ 1,22
Col6a5A6H584 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC22,68■■□□□ 1,22
Col6a5A6H584 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC22,66■■□□□ 1,22
Col6a5A6H584 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22,64■■□□□ 1,21
Col6a5A6H584 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC22,62■■□□□ 1,21
Col6a5A6H584 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22,61■■□□□ 1,21
Col6a5A6H584 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC22,59■■□□□ 1,21
Col6a5A6H584 Gm27322-201ENSMUST00000184007 104 ntBASIC22,59■■□□□ 1,21
Col6a5A6H584 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC22,58■■□□□ 1,21
Col6a5A6H584 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22,55■■□□□ 1,2
Col6a5A6H584 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC22,55■■□□□ 1,2
Col6a5A6H584 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22,54■■□□□ 1,2
Col6a5A6H584 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22,5■■□□□ 1,19
Col6a5A6H584 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC22,5■■□□□ 1,19
Col6a5A6H584 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC22,46■■□□□ 1,19
Col6a5A6H584 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22,44■■□□□ 1,18
Col6a5A6H584 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC22,42■■□□□ 1,18
Col6a5A6H584 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22,41■■□□□ 1,18
Col6a5A6H584 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22,4■■□□□ 1,18
Retrieved 100 of 76,532 protein–RNA pairs in 15,9 ms