RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Gm3443F7CCV5 94 aa11.62□□□□□ -0.55
Trim28-201ENSMUST00000005705 Sostdc1Q9CQN4 206 aa11.62□□□□□ -0.55
Trim28-201ENSMUST00000005705 Igkv1-35A0A0G2JDE5 120 aa11.62□□□□□ -0.55
Trim28-201ENSMUST00000005705 Trav4d-3A0A075B625 110 aa11.61□□□□□ -0.55
Trim28-201ENSMUST00000005705 Morn3Q8C5T4 241 aa11.61□□□□□ -0.55
Trim28-201ENSMUST00000005705 Krtap27-1E9PX37 202 aa11.61□□□□□ -0.55
Trim28-201ENSMUST00000005705 MalO09198 153 aa11.61□□□□□ -0.55
Trim28-201ENSMUST00000005705 Fam110dQ80X91 271 aa11.61□□□□□ -0.55
Trim28-201ENSMUST00000005705 Defa23Q5G866 93 aa11.6□□□□□ -0.55
Trim28-201ENSMUST00000005705 Gatd1Q8BFQ8 220 aa11.6□□□□□ -0.55
Trim28-201ENSMUST00000005705 Defb2P82020 71 aa11.6□□□□□ -0.55
Trim28-201ENSMUST00000005705 Trav13d-4A0A0G2JFX3 110 aa11.59□□□□□ -0.55
Trim28-201ENSMUST00000005705 Lst1O08843 95 aa11.59□□□□□ -0.55
Trim28-201ENSMUST00000005705 Tmem86bQ497J1 226 aa11.59□□□□□ -0.55
Trim28-201ENSMUST00000005705 Rnase1P00683 149 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 P01745 121 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 Srsf12Q8C8K3 266 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 ApcQ61315 2845 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 Igf1P05017 153 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 Igkv4-68A0A0B4J1I7 117 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 CrygdP04342 174 aa11.58□□□□□ -0.56
Trim28-201ENSMUST00000005705 Nsd1O88491 2588 aaKnown RBP11.57□□□□□ -0.56
Trim28-201ENSMUST00000005705 Trav13-1A0A075B644 110 aa11.57□□□□□ -0.56
Trim28-201ENSMUST00000005705 Fn1P11276 2477 aaKnown RBP11.56□□□□□ -0.56
Trim28-201ENSMUST00000005705 1700011M02RikB1AX35 88 aa11.56□□□□□ -0.56
Trim28-201ENSMUST00000005705 Naa38Q9D2U5 125 aa11.56□□□□□ -0.56
Trim28-201ENSMUST00000005705 Col6a5A6H584 2640 aa11.55□□□□□ -0.56
Trim28-201ENSMUST00000005705 Ighv1-62-1A0A075B5U3 116 aa11.55□□□□□ -0.56
Trim28-201ENSMUST00000005705 SbsponQ3UPR9 264 aa11.55□□□□□ -0.56
Trim28-201ENSMUST00000005705 4930518I15RikQ3V2W7 57 aa11.55□□□□□ -0.56
Trim28-201ENSMUST00000005705 4930442H23RikQ9D5G7 103 aa11.55□□□□□ -0.56
Trim28-201ENSMUST00000005705 Gm17472A0A075B683 117 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 Gm10647E9Q8X0 124 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 Leap2Q91V13 76 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 Igkv6-13A0A0G2JGY3 119 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 PemtQ61907 199 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 1700010B08RikQ9DAI7 102 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 Timm17bQ9Z0V7 172 aa11.54□□□□□ -0.56
Trim28-201ENSMUST00000005705 5730596B20RikQ8BQ08 205 aa11.53□□□□□ -0.56
Trim28-201ENSMUST00000005705 HrnrQ8VHD8 2496 aa11.53□□□□□ -0.56
Trim28-201ENSMUST00000005705 Trav13n-2A0A0G2JF93 110 aa11.52□□□□□ -0.56
Trim28-201ENSMUST00000005705 Rpl36aP83882 106 aaKnown RBP11.52□□□□□ -0.56
Trim28-201ENSMUST00000005705 9430069I07RikQ9CX21 111 aa11.52□□□□□ -0.56
Trim28-201ENSMUST00000005705 Cd164l2Q9D6W7 172 aa11.52□□□□□ -0.56
Trim28-201ENSMUST00000005705 Cox17P56394 63 aa11.52□□□□□ -0.57
Trim28-201ENSMUST00000005705 Ndufa12Q7TMF3 145 aaKnown RBP11.52□□□□□ -0.57
Trim28-201ENSMUST00000005705 Gm8439G3UWA7 96 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 2010109I03RikQ9CQ11 111 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 Trav4-3A0A0B4J1K1 110 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 Gm7102J3QQ10 178 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 Fgfbp3Q1HCM0 245 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 Samd13D3YUG0 102 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 P01755 137 aa11.5□□□□□ -0.57
Trim28-201ENSMUST00000005705 Ighv8-11A0A075B5X4 119 aa11.49□□□□□ -0.57
Trim28-201ENSMUST00000005705 Trav11A0A0B4J1J9 114 aa11.49□□□□□ -0.57
Trim28-201ENSMUST00000005705 Tenm1Q9WTS4 2731 aa11.49□□□□□ -0.57
Trim28-201ENSMUST00000005705 Spata25Q9DA57 226 aa11.48□□□□□ -0.57
Trim28-201ENSMUST00000005705 Trav13-2A0A075B649 110 aa11.47□□□□□ -0.57
Trim28-201ENSMUST00000005705 Q8R092 253 aa11.47□□□□□ -0.57
Trim28-201ENSMUST00000005705 4930535I16RikQ9CUI2 172 aa11.47□□□□□ -0.57
Trim28-201ENSMUST00000005705 Brk1Q91VR8 75 aa11.46□□□□□ -0.57
Trim28-201ENSMUST00000005705 Tmem243B2RVB9 118 aa11.46□□□□□ -0.58
Trim28-201ENSMUST00000005705 Lypd5Q9D7Z7 256 aa11.46□□□□□ -0.58
Trim28-201ENSMUST00000005705 Igkv1-117A0A140T8M0 119 aa11.45□□□□□ -0.58
Trim28-201ENSMUST00000005705 Tfpi2O35536 230 aa11.45□□□□□ -0.58
Trim28-201ENSMUST00000005705 Plac8l1Q08EJ0 177 aa11.45□□□□□ -0.58
Trim28-201ENSMUST00000005705 Hbb-b2P02089 147 aa11.45□□□□□ -0.58
Trim28-201ENSMUST00000005705 Cdc42se2Q8BGH7 84 aa11.45□□□□□ -0.58
Trim28-201ENSMUST00000005705 Dnal4Q9DCM4 105 aa11.44□□□□□ -0.58
Trim28-201ENSMUST00000005705 Q99M08 65 aa11.44□□□□□ -0.58
Trim28-201ENSMUST00000005705 Xcl1P47993 114 aa11.43□□□□□ -0.58
Trim28-201ENSMUST00000005705 Fxyd5P97808 178 aa11.43□□□□□ -0.58
Trim28-201ENSMUST00000005705 Defb42Q8BVB5 75 aa11.43□□□□□ -0.58
Trim28-201ENSMUST00000005705 Fbn1Q61554 2873 aaKnown RBP11.43□□□□□ -0.58
Trim28-201ENSMUST00000005705 Itpr2Q9Z329 2701 aa11.43□□□□□ -0.58
Trim28-201ENSMUST00000005705 Tenm4Q3UHK6 2771 aa11.43□□□□□ -0.58
Trim28-201ENSMUST00000005705 Hist1h4aP62806 103 aaKnown RBP11.42□□□□□ -0.58
Trim28-201ENSMUST00000005705 Pla2g1bQ9Z0Y2 146 aa11.42□□□□□ -0.58
Trim28-201ENSMUST00000005705 Ighv1-61P01749 117 aa11.41□□□□□ -0.58
Trim28-201ENSMUST00000005705 4930524J08RikQ9CUJ5 163 aa11.41□□□□□ -0.58
Trim28-201ENSMUST00000005705 Cox6b1P56391 86 aaKnown RBP11.41□□□□□ -0.58
Trim28-201ENSMUST00000005705 Vmo1Q5SXG7 201 aa11.41□□□□□ -0.58
Trim28-201ENSMUST00000005705 Fam19a5Q91WE9 132 aa11.41□□□□□ -0.58
Trim28-201ENSMUST00000005705 Mrpl52Q9D0Y8 121 aa11.41□□□□□ -0.58
Trim28-201ENSMUST00000005705 Wfdc12Q9JHY3 85 aa11.4□□□□□ -0.58
Trim28-201ENSMUST00000005705 Ly6c2P0CW03 131 aa11.39□□□□□ -0.59
Trim28-201ENSMUST00000005705 7530416G11RikJ3QJX6 159 aa11.39□□□□□ -0.59
Trim28-201ENSMUST00000005705 Igkv1-99F6XWB2 120 aa11.39□□□□□ -0.59
Trim28-201ENSMUST00000005705 Cops9Q3U898 57 aa11.38□□□□□ -0.59
Trim28-201ENSMUST00000005705 Lage3Q9CR70 148 aa11.38□□□□□ -0.59
Trim28-201ENSMUST00000005705 Mrpl55Q9CZ83 127 aa11.38□□□□□ -0.59
Trim28-201ENSMUST00000005705 Smim26Q3V460 107 aa11.37□□□□□ -0.59
Trim28-201ENSMUST00000005705 A0A286YCN5 57 aa11.37□□□□□ -0.59
Trim28-201ENSMUST00000005705 GfyJ3KML8 504 aa11.37□□□□□ -0.59
Trim28-201ENSMUST00000005705 Ppp1r32Q148A4 427 aa11.36□□□□□ -0.59
Trim28-201ENSMUST00000005705 Gm16381A0A1Y7VKT9 73 aa11.35□□□□□ -0.59
Trim28-201ENSMUST00000005705 MifP34884 115 aaKnown RBP11.35□□□□□ -0.59
Trim28-201ENSMUST00000005705 Igkv2-109A0A075B5K6 120 aa11.35□□□□□ -0.59
Trim28-201ENSMUST00000005705 B230307C23RikQ8BLB2 64 aa11.35□□□□□ -0.59
Trim28-201ENSMUST00000005705 Klk12B2RVZ0 247 aa11.34□□□□□ -0.59
Retrieved 100 of 22,080 RNA–protein pairs in 43.8 ms