RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 NischQ80TM9 1593 aa30.27■■■□□ 2.44
Trim28-201ENSMUST00000005705 Gm35339A0A140LHH9 1649 aa29.34■■■□□ 2.29
Trim28-201ENSMUST00000005705 Rhox8Q6VSS7 320 aa29.26■■■□□ 2.27
Trim28-201ENSMUST00000005705 Abcc9P70170 1546 aa29.25■■■□□ 2.27
Trim28-201ENSMUST00000005705 Abcc8B2RUS7 1588 aa28.65■■■□□ 2.18
Trim28-201ENSMUST00000005705 Ehmt2Q9Z148 1263 aaKnown RBP27.66■■■□□ 2.02
Trim28-201ENSMUST00000005705 Rtl1Q7M732 1744 aa27.38■■□□□ 1.97
Trim28-201ENSMUST00000005705 Ccdc136Q3TVA9 1136 aa27.16■■□□□ 1.94
Trim28-201ENSMUST00000005705 Ccdc180J3QNE4 1664 aa27.06■■□□□ 1.92
Trim28-201ENSMUST00000005705 Rpgrip1Q9EPQ2 1331 aa26.9■■□□□ 1.9
Trim28-201ENSMUST00000005705 ScribQ80U72 1612 aa26.72■■□□□ 1.87
Trim28-201ENSMUST00000005705 Zcchc6Q5BLK4 1491 aaKnown RBP26.61■■□□□ 1.85
Trim28-201ENSMUST00000005705 Rb1cc1Q9ESK9 1588 aa26.54■■□□□ 1.84
Trim28-201ENSMUST00000005705 Acin1Q9JIX8 1338 aaKnown RBP26.52■■□□□ 1.84
Trim28-201ENSMUST00000005705 Dcaf1Q80TR8 1506 aa26.45■■□□□ 1.83
Trim28-201ENSMUST00000005705 Kdm5dQ62240 1548 aa26.29■■□□□ 1.8
Trim28-201ENSMUST00000005705 Trim41Q5NCC3 630 aa26.18■■□□□ 1.78
Trim28-201ENSMUST00000005705 Baz1aO88379 1555 aa26.13■■□□□ 1.77
Trim28-201ENSMUST00000005705 Pcgf6Q99NA9 353 aa26.04■■□□□ 1.76
Trim28-201ENSMUST00000005705 Gab3Q8BSM5 595 aa26.02■■□□□ 1.76
Trim28-201ENSMUST00000005705 NacadQ5SWP3 1504 aa25.99■■□□□ 1.75
Trim28-201ENSMUST00000005705 HrcG5E8J6 738 aa25.93■■□□□ 1.74
Trim28-201ENSMUST00000005705 Cngb1E1AZ71 1325 aa25.83■■□□□ 1.73
Trim28-201ENSMUST00000005705 Supt5hO55201 1082 aaKnown RBP25.58■■□□□ 1.69
Trim28-201ENSMUST00000005705 Zeb1Q64318 1117 aa25.56■■□□□ 1.68
Trim28-201ENSMUST00000005705 Smarca2Q6DIC0 1577 aa25.51■■□□□ 1.67
Trim28-201ENSMUST00000005705 Sycp2Q9CUU3 1500 aa25.43■■□□□ 1.66
Trim28-201ENSMUST00000005705 Chic1Q8CBW7 227 aa25.43■■□□□ 1.66
Trim28-201ENSMUST00000005705 Crybg2B7ZCC2 1516 aa25.41■■□□□ 1.66
Trim28-201ENSMUST00000005705 Esf1Q3V1V3 845 aaKnown RBP25.24■■□□□ 1.63
Trim28-201ENSMUST00000005705 Cep164Q5DU05 1446 aa25.17■■□□□ 1.62
Trim28-201ENSMUST00000005705 Cecr2E9Q2Z1 1453 aa25.16■■□□□ 1.62
Trim28-201ENSMUST00000005705 Ppargc1bQ8VHJ7 1014 aa25.15■■□□□ 1.62
Trim28-201ENSMUST00000005705 Neurod1Q60867 357 aa25.11■■□□□ 1.61
Trim28-201ENSMUST00000005705 Brd4Q9ESU6 1400 aaKnown RBP25.04■■□□□ 1.6
Trim28-201ENSMUST00000005705 Rsf1E9PWW9 1441 aaKnown RBP25.02■■□□□ 1.6
Trim28-201ENSMUST00000005705 UbtfP25976 765 aaKnown RBP24.97■■□□□ 1.59
Trim28-201ENSMUST00000005705 Myt1lP97500 1187 aa24.95■■□□□ 1.58
Trim28-201ENSMUST00000005705 Mier1Q5UAK0 511 aa24.95■■□□□ 1.58
Trim28-201ENSMUST00000005705 BicraF8VPZ9 1578 aa24.91■■□□□ 1.58
Trim28-201ENSMUST00000005705 Ccdc88bQ4QRL3 1481 aa24.87■■□□□ 1.57
Trim28-201ENSMUST00000005705 Synj1Q8CHC4 1574 aa24.86■■□□□ 1.57
Trim28-201ENSMUST00000005705 Golga3P55937 1487 aa24.8■■□□□ 1.56
Trim28-201ENSMUST00000005705 Wdr66E9Q743 1299 aa24.78■■□□□ 1.56
Trim28-201ENSMUST00000005705 Sall2Q9QX96 1004 aa24.71■■□□□ 1.55
Trim28-201ENSMUST00000005705 CftrP26361 1476 aa24.67■■□□□ 1.54
Trim28-201ENSMUST00000005705 NefmP08553 848 aa24.59■■□□□ 1.53
Trim28-201ENSMUST00000005705 Npm2Q80W85 207 aa24.49■■□□□ 1.51
Trim28-201ENSMUST00000005705 Las1lA2BE28 776 aaKnown RBP24.45■■□□□ 1.5
Trim28-201ENSMUST00000005705 Aebp2Q9Z248 504 aaKnown RBP24.42■■□□□ 1.5
Trim28-201ENSMUST00000005705 Cttnbp2B9EJA2 1648 aa24.42■■□□□ 1.5
Trim28-201ENSMUST00000005705 Csrnp3P59055 597 aa24.39■■□□□ 1.49
Trim28-201ENSMUST00000005705 Smarca4Q3TKT4 1613 aaKnown RBP24.36■■□□□ 1.49
Trim28-201ENSMUST00000005705 Plekhg3Q4VAC9 1341 aa24.36■■□□□ 1.49
Trim28-201ENSMUST00000005705 Top2bQ64511 1612 aa24.35■■□□□ 1.49
Trim28-201ENSMUST00000005705 Ap3b1Q9Z1T1 1105 aa24.34■■□□□ 1.49
Trim28-201ENSMUST00000005705 Cc2d2aQ8CFW7 1633 aa24.33■■□□□ 1.49
Trim28-201ENSMUST00000005705 Il27Q8K3I6 234 aa24.3■■□□□ 1.48
Trim28-201ENSMUST00000005705 1700123L14RikQ3V2K7 440 aa24.29■■□□□ 1.48
Trim28-201ENSMUST00000005705 Gm38655A0A286YDK6 273 aa24.26■■□□□ 1.47
Trim28-201ENSMUST00000005705 Anks4bQ8K3X6 423 aa24.16■■□□□ 1.46
Trim28-201ENSMUST00000005705 Eid3Q3V124 375 aa24.14■■□□□ 1.45
Trim28-201ENSMUST00000005705 Mapk8ip2Q9ERE9 830 aa24.11■■□□□ 1.45
Trim28-201ENSMUST00000005705 Iqgap2Q3UQ44 1575 aa24.09■■□□□ 1.45
Trim28-201ENSMUST00000005705 Fmn1Q05860 1466 aa24.08■■□□□ 1.45
Trim28-201ENSMUST00000005705 Cdk11bP24788 784 aaKnown RBP24.06■■□□□ 1.44
Trim28-201ENSMUST00000005705 Nop58Q6DFW4 536 aaKnown RBP24.06■■□□□ 1.44
Trim28-201ENSMUST00000005705 Rapgef2Q8CHG7 1496 aa24■■□□□ 1.43
Trim28-201ENSMUST00000005705 CenpbP27790 599 aa23.99■■□□□ 1.43
Trim28-201ENSMUST00000005705 Top2aQ01320 1528 aaKnown RBP23.95■■□□□ 1.43
Trim28-201ENSMUST00000005705 Cep162Q6ZQ06 1403 aa23.92■■□□□ 1.42
Trim28-201ENSMUST00000005705 Atad2bE9Q166 1460 aaKnown RBP23.9■■□□□ 1.42
Trim28-201ENSMUST00000005705 ClspnQ80YR7 1315 aa23.87■■□□□ 1.41
Trim28-201ENSMUST00000005705 TonslQ6NZL6 1363 aa23.84■■□□□ 1.41
Trim28-201ENSMUST00000005705 DiexfQ8BTT6 772 aaKnown RBP23.8■■□□□ 1.4
Trim28-201ENSMUST00000005705 Pds5bQ4VA53 1446 aaKnown RBP23.79■■□□□ 1.4
Trim28-201ENSMUST00000005705 Clip1Q922J3 1391 aa23.77■■□□□ 1.4
Trim28-201ENSMUST00000005705 Lmod2Q3UHZ5 550 aa23.73■■□□□ 1.39
Trim28-201ENSMUST00000005705 Fam50aQ9WV03 339 aaKnown RBP23.68■■□□□ 1.38
Trim28-201ENSMUST00000005705 Frmpd1A2AKB4 1549 aa23.64■■□□□ 1.38
Trim28-201ENSMUST00000005705 Aplp2Q06335 707 aa23.63■■□□□ 1.37
Trim28-201ENSMUST00000005705 Kif15Q6P9L6 1387 aa23.62■■□□□ 1.37
Trim28-201ENSMUST00000005705 Myt1Q8CFC2 1127 aa23.62■■□□□ 1.37
Trim28-201ENSMUST00000005705 PtprkP35822 1457 aa23.57■■□□□ 1.36
Trim28-201ENSMUST00000005705 Wdr62Q3U3T8 1523 aa23.53■■□□□ 1.36
Trim28-201ENSMUST00000005705 Ube2uB1AUC4 352 aa23.53■■□□□ 1.36
Trim28-201ENSMUST00000005705 Slc24a1Q91WD8 1130 aa23.51■■□□□ 1.35
Trim28-201ENSMUST00000005705 TnnQ80Z71 1560 aa23.5■■□□□ 1.35
Trim28-201ENSMUST00000005705 Arhgap35Q91YM2 1499 aa23.47■■□□□ 1.35
Trim28-201ENSMUST00000005705 Ercc6F8VPZ5 1481 aa23.46■■□□□ 1.35
Trim28-201ENSMUST00000005705 Eif4g1Q6NZJ6 1600 aaKnown RBP23.43■■□□□ 1.34
Trim28-201ENSMUST00000005705 SafbD3YXK2 937 aaKnown RBP23.4■■□□□ 1.34
Trim28-201ENSMUST00000005705 Lamc3Q9R0B6 1581 aa23.37■■□□□ 1.33
Trim28-201ENSMUST00000005705 NclP09405 707 aaKnown RBP23.37■■□□□ 1.33
Trim28-201ENSMUST00000005705 Setd5Q5XJV7 1441 aa23.36■■□□□ 1.33
Trim28-201ENSMUST00000005705 Bcl11aQ9QYE3 773 aa23.35■■□□□ 1.33
Trim28-201ENSMUST00000005705 Eea1Q8BL66 1411 aa23.35■■□□□ 1.33
Trim28-201ENSMUST00000005705 Hnrnpul2Q00PI9 745 aaKnown RBP23.35■■□□□ 1.33
Trim28-201ENSMUST00000005705 Arap1Q4LDD4 1452 aa23.31■■□□□ 1.32
Trim28-201ENSMUST00000005705 NrkQ9R0G8 1455 aa23.3■■□□□ 1.32
Retrieved 100 of 22,080 RNA–protein pairs in 13.5 ms