RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 Qrich2A0A140LIY9 2337 aa13.94□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm42674D3YUT9 64 aa13.94□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Trav2Q5R1I9 109 aa13.94□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Sap30O88574 220 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 SrarpQ3ULG3 163 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Tcf24V9GWT9 166 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm9195A0A140LHT4 2805 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Ighv1-58A0A075B5W9 117 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm10553J3QPF1 123 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 P04219 140 aa13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Ankhd1E9PUR0 2548 aaKnown RBP13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Prpf8Q99PV0 2335 aaKnown RBP13.93□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm45753A0A1C7CYU8 86 aa13.92□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm17732E9Q5I2 61 aa13.92□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Pglyrp1O88593 182 aa13.92□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm12057A0A087WR21 115 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Ighv1-52A0A0A6YXC3 117 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Ube2d1P61080 147 aaKnown RBP13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Foxi2Q3I5G5 311 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Pgpep1Q9ESW8 209 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Rs1Q9Z1L4 224 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 NrgnP60761 78 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm1553Q66VB7 94 aa13.91□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Trav4n-4A0A075B615 110 aa13.9□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 PolP10400 120 aa13.9□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Clec5aQ9R007 190 aa13.9□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Dpm2Q9Z324 84 aa13.9□□□□□ -0.18
Shkbp1-201ENSMUST00000003857 Gm2564F6Z9S8 108 aa13.89□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Ighv2-3A0A075B696 115 aa13.89□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Trbv17A0A140T8P8 114 aa13.89□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Gm45717A0A1B0GT68 152 aa13.89□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 F11rO88792 300 aa13.89□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 OtoglF7A4A7 2325 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Ighv8-12A0A0G2JDE1 119 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 4930596D02RikQ3V0H9 216 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Defa24Q5G865 93 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Fam222aQ6PGH4 453 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 AI854703Q8BIN3 203 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Snrpd3P62320 126 aaKnown RBP13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Mllt11P97783 90 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Cysltr1Q99JA4 352 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Timm17aQ9Z0V8 171 aa13.88□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Nat8b-psE0CYC6 232 aa13.87□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Q5BN45 167 aa13.87□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Gemin7Q9CWY4 129 aa13.87□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Fam216aQ9DB54 251 aa13.87□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Ighv1-85A0A075B5Y6 117 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Tmem238A9JSM3 176 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Hoxd3P09027 433 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Cd69P37217 199 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Tspan13Q9D8C2 204 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 P01802 115 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Defa3P28310 93 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Defa10P50708 93 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Defa15P50713 93 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Gm21370Q3T9V6 190 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Triap1Q9D8Z2 76 aa13.86□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Ighv2-7A0A075B5Q8 116 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Ighv8-5A0A0A6YY60 119 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Cited2O35740 269 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 FcorP0DJI6 106 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Sorl1O88307 2215 aaKnown RBP13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Ighv1-5A0A0A6YWG2 117 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Cox8cA6H666 72 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 HilpdaQ9JLS0 64 aa13.85□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Srsf9Q9D0B0 222 aaKnown RBP13.84□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 4930564D02RikQ9D4S4 103 aa13.84□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Gm6812B1AXU1 112 aa13.83□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Gm21994F6T2D2 329 aa13.83□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Sigmar1O55242 223 aa13.83□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Uqcrfs1Q9CR68 274 aa13.83□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 AcacbE9Q4Z2 2448 aa13.83□□□□□ -0.19
Shkbp1-201ENSMUST00000003857 Abca2P41234 2434 aa13.83□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Trav9-2A0A075B647 113 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Trav9-4A0A0B4J1K2 113 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 P06329 120 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Ube2d3P61079 147 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Ube2d2P62838 147 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Higd1aQ9JLR9 95 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 LrbaQ9ESE1 2856 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Dmrt3Q80WT2 476 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Ankrd39Q9D2X0 183 aa13.82□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Krtap27-1E9PX37 202 aa13.81□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 1810032O08RikE9PZV8 113 aa13.81□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 P01753 117 aa13.81□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Spag11Q8K4N2 71 aa13.81□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 LystP97412 3788 aa13.8□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Tac4Q99N14 128 aa13.8□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Lrcol1Q3URS3 161 aa13.79□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Klk5Q9D140 293 aa13.79□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Dynlrb2Q9DAJ5 96 aa13.79□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Kmt2bO08550 2713 aa13.79□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 BatfO35284 125 aa13.79□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 NrepQ07475 68 aa13.79□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 A930009A15RikG3UYI6 118 aa13.78□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Gm28044L7N1X0 119 aa13.78□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Defa-rs7P50715 91 aa13.78□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Cyyr1Q8VIH7 165 aa13.78□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 Ighv5-9-1A0A0A6YVS4 126 aa13.78□□□□□ -0.2
Shkbp1-201ENSMUST00000003857 LeprotO89013 131 aa13.78□□□□□ -0.2
Retrieved 100 of 22,080 RNA–protein pairs in 101.4 ms