Protein–RNA interactions for Protein: A0A0A6YXC3

Ighv1-52, Immunoglobulin heavy variable 1-52 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ighv1-52A0A0A6YXC3 Gm25239-201ENSMUST00000174915 86 ntBASIC28.3■■■□□ 2.12
Ighv1-52A0A0A6YXC3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Ighv1-52A0A0A6YXC3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ighv1-52A0A0A6YXC3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ighv1-52A0A0A6YXC3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ighv1-52A0A0A6YXC3 Gm15042-201ENSMUST00000120212 883 ntBASIC25.06■■□□□ 1.6
Ighv1-52A0A0A6YXC3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
Ighv1-52A0A0A6YXC3 Gm15045-201ENSMUST00000117359 883 ntBASIC24.51■■□□□ 1.51
Ighv1-52A0A0A6YXC3 Gm24109-201ENSMUST00000175489 103 ntBASIC24.35■■□□□ 1.49
Ighv1-52A0A0A6YXC3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Ighv1-52A0A0A6YXC3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ighv1-52A0A0A6YXC3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ighv1-52A0A0A6YXC3 Psd-208ENSMUST00000224556 2034 ntBASIC23.86■■□□□ 1.41
Ighv1-52A0A0A6YXC3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.79■■□□□ 1.4
Ighv1-52A0A0A6YXC3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Ighv1-52A0A0A6YXC3 Gm23366-201ENSMUST00000175022 89 ntBASIC23.73■■□□□ 1.39
Ighv1-52A0A0A6YXC3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ighv1-52A0A0A6YXC3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ighv1-52A0A0A6YXC3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Ighv1-52A0A0A6YXC3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ighv1-52A0A0A6YXC3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ighv1-52A0A0A6YXC3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ighv1-52A0A0A6YXC3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ighv1-52A0A0A6YXC3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ighv1-52A0A0A6YXC3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ighv1-52A0A0A6YXC3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC23.22■■□□□ 1.31
Ighv1-52A0A0A6YXC3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ighv1-52A0A0A6YXC3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ighv1-52A0A0A6YXC3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Ighv1-52A0A0A6YXC3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ighv1-52A0A0A6YXC3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22.98■■□□□ 1.27
Ighv1-52A0A0A6YXC3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.93■■□□□ 1.26
Ighv1-52A0A0A6YXC3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ighv1-52A0A0A6YXC3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Ighv1-52A0A0A6YXC3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.55■■□□□ 1.2
Ighv1-52A0A0A6YXC3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ighv1-52A0A0A6YXC3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ighv1-52A0A0A6YXC3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22.52■■□□□ 1.2
Ighv1-52A0A0A6YXC3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ighv1-52A0A0A6YXC3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.19
Ighv1-52A0A0A6YXC3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ighv1-52A0A0A6YXC3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
Ighv1-52A0A0A6YXC3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ighv1-52A0A0A6YXC3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ighv1-52A0A0A6YXC3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ighv1-52A0A0A6YXC3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22.24■■□□□ 1.15
Ighv1-52A0A0A6YXC3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.24■■□□□ 1.15
Ighv1-52A0A0A6YXC3 Gm25238-201ENSMUST00000174914 89 ntBASIC22.22■■□□□ 1.15
Ighv1-52A0A0A6YXC3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.17■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ighv1-52A0A0A6YXC3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ighv1-52A0A0A6YXC3 Gm27325-201ENSMUST00000175467 74 ntBASIC22.01■■□□□ 1.11
Ighv1-52A0A0A6YXC3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ighv1-52A0A0A6YXC3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ighv1-52A0A0A6YXC3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.94■■□□□ 1.1
Ighv1-52A0A0A6YXC3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.9■■□□□ 1.1
Ighv1-52A0A0A6YXC3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Ighv1-52A0A0A6YXC3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
Ighv1-52A0A0A6YXC3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Ighv1-52A0A0A6YXC3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
Ighv1-52A0A0A6YXC3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Ighv1-52A0A0A6YXC3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Ighv1-52A0A0A6YXC3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ighv1-52A0A0A6YXC3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.78■■□□□ 1.08
Ighv1-52A0A0A6YXC3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ighv1-52A0A0A6YXC3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ighv1-52A0A0A6YXC3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ighv1-52A0A0A6YXC3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ighv1-52A0A0A6YXC3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.67■■□□□ 1.06
Ighv1-52A0A0A6YXC3 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.66■■□□□ 1.06
Ighv1-52A0A0A6YXC3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.65■■□□□ 1.06
Ighv1-52A0A0A6YXC3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ighv1-52A0A0A6YXC3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ighv1-52A0A0A6YXC3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Ighv1-52A0A0A6YXC3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
Ighv1-52A0A0A6YXC3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.48■■□□□ 1.03
Ighv1-52A0A0A6YXC3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ighv1-52A0A0A6YXC3 Rab21-202ENSMUST00000218831 843 ntBASIC21.42■■□□□ 1.02
Ighv1-52A0A0A6YXC3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ighv1-52A0A0A6YXC3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ighv1-52A0A0A6YXC3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ighv1-52A0A0A6YXC3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ighv1-52A0A0A6YXC3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21.32■■□□□ 1
Ighv1-52A0A0A6YXC3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ighv1-52A0A0A6YXC3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ighv1-52A0A0A6YXC3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ighv1-52A0A0A6YXC3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.22■□□□□ 0.99
Ighv1-52A0A0A6YXC3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ighv1-52A0A0A6YXC3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ighv1-52A0A0A6YXC3 Gm25262-201ENSMUST00000174934 133 ntBASIC21.19■□□□□ 0.98
Ighv1-52A0A0A6YXC3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ighv1-52A0A0A6YXC3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ighv1-52A0A0A6YXC3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.17■□□□□ 0.98
Ighv1-52A0A0A6YXC3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ighv1-52A0A0A6YXC3 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms