RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Cox7cP17665 63 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Eml6Q5SQM0 1958 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Xcl1P47993 114 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ube2e2Q91W82 201 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 SpinklQ8CEK3 90 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 IgipA0A1B0GR74 53 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Olfr312Q7TRZ9 308 aa12.12□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Gm21994F6T2D2 329 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Srsf2Q62093 221 aaKnown RBP12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ighv1-23A0A0A6YVW3 117 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ccl21aP84444 133 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ccl21bP86792 133 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ccl21cP86793 133 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Tcf24V9GWT9 166 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 HttP42859 3119 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Nbl1Q61477 178 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Foxi1Q922I5 372 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Bex1Q9R224 128 aa12.11□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 P01794 123 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Pet100P0DJE0 76 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Mustn1Q99JI1 82 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Rpl35aO55142 110 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 LeprotO89013 131 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Vwc2lQ505H4 222 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Shisa9Q9CZN4 424 aa12.1□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 P01643 108 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Smim26Q3V460 107 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Igkv1-99F6XWB2 120 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Gm9958Q8C9U4 106 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Ndufa3Q9CQ91 84 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Gm10604Q3V0X7 143 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Socs3O35718 225 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 P04944 107 aa12.09□□□□□ -0.47
Ccdc88b-201ENSMUST00000113440 Gm21060J3KMU4 56 aa12.08□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Sdhaf1Q3U276 118 aa12.08□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Wisp2Q9Z0G4 251 aa12.08□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 BlcapP62951 87 aa12.08□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Defb18Q30KP5 85 aa12.08□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Lypd6Q8BPP5 171 aa12.08□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Tanc2A2A690 1994 aa12.07□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Notch3Q61982 2318 aa12.07□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Gm7102J3QQ10 178 aa12.07□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Pip4p1Q3TWL2 284 aa12.07□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Vmo1Q5SXG7 201 aa12.07□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Tmem14cQ9CQN6 114 aa12.07□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Dido1Q8C9B9 2256 aaKnown RBP12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Tcl1b4P56844 120 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 CrygcQ61597 174 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 A0A286YE02 88 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Lamtor3O88653 124 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Tnfrsf23Q9ER63 176 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Runx1Q03347 451 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Q8R092 253 aa12.06□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Igkv4-62A0A0G2JDW9 117 aa12.05□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 4930447F04RikA2AFR2 126 aa12.05□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Hoxb4P10284 250 aa12.05□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Ccl24Q9JKC0 119 aa12.05□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Ighv1-64A0A075B5X3 117 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Fam216aQ9DB54 251 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Ramp1Q9WTJ5 148 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 SetxA2AKX3 2646 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Gm15557A6PWY0 234 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Gm10553J3QPF1 123 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 MsmbO08540 113 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Gp9O88186 177 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Edn1P22387 202 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 BC048502Q80Y74 154 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Gm20481G3UXK4 153 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Olfr313Q5NC55 308 aa12.04□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Wnk1P83741 2377 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Igkv3-1A0A075B5P1 119 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Ighv5-9-1A0A0A6YVS4 126 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Erdr1J3QMM0 206 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Rasl10aQ8K5A4 203 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Rnf183Q8QZS5 190 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Igkv8-24A0A140T8P5 121 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Ifitm1Q9D103 106 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Fam241bQ9D882 120 aa12.03□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Reg3gO09049 174 aa12.02□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Igkv4-57-1A0A075B5M4 119 aa12.02□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Lect2O88803 151 aa12.02□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 P01739 132 aa12.02□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Gm5941Q497P9 117 aa12.02□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Bub3Q9WVA3 326 aa12.02□□□□□ -0.48
Ccdc88b-201ENSMUST00000113440 Igkv4-53A0A0G2JFC6 119 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm9747Q810H1 104 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm5468Q8C3D3 155 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Lage3Q9CR70 148 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Igkv3-2A0A075B5P0 119 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm15294V9GXA7 121 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Arhgef17Q80U35 2057 aa12.02□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm20499D3Z4G5 72 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 NpyP57774 97 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ubl5Q9EPV8 73 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ighv1-77A0A0G2JGS9 117 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm9513B3GLJ6 99 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ss18l2Q9D174 77 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ighv3-1A0A075B5S6 116 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm9913Q8BQQ2 135 aa12.01□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Smim10l1A0A087WNQ7 89 aa12□□□□□ -0.49
Retrieved 100 of 22,080 RNA–protein pairs in 80.4 ms