RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 SPANXA2-OT1Q8N9U9 137 aa5.85□□□□□ -1.47
SNX1-212ENST00000560861 TMEM258P61165 79 aa5.84□□□□□ -1.47
SNX1-212ENST00000560861 MUC2Q02817 5179 aa5.84□□□□□ -1.47
SNX1-212ENST00000560861 KRTAP4-1Q9BYQ7 146 aa5.83□□□□□ -1.48
SNX1-212ENST00000560861 FAM236DA0A1B0GTK5 79 aa5.8□□□□□ -1.48
SNX1-212ENST00000560861 FAM236CP0DP71 79 aa5.8□□□□□ -1.48
SNX1-212ENST00000560861 MPLKIPQ8TAP9 179 aa5.8□□□□□ -1.48
SNX1-212ENST00000560861 ATP5EP56381 51 aaPredicted RBP5.78□□□□□ -1.48
SNX1-212ENST00000560861 C4orf26Q17RF5 130 aa5.77□□□□□ -1.49
SNX1-212ENST00000560861 KRTAP3-1Q9BYR8 98 aa5.77□□□□□ -1.49
SNX1-212ENST00000560861 DMAC1Q96GE9 116 aa5.76□□□□□ -1.49
SNX1-212ENST00000560861 KRTAP4-9Q9BYQ8 210 aa5.76□□□□□ -1.49
SNX1-212ENST00000560861 COX6B2Q6YFQ2 88 aa5.75□□□□□ -1.49
SNX1-212ENST00000560861 KRTAP19-4Q3LI73 84 aa5.74□□□□□ -1.49
SNX1-212ENST00000560861 LCE4AQ5TA78 99 aa5.73□□□□□ -1.49
SNX1-212ENST00000560861 KRTAP19-2Q3LHN2 52 aa5.72□□□□□ -1.49
SNX1-212ENST00000560861 A8MUN3 132 aa5.7□□□□□ -1.5
SNX1-212ENST00000560861 FAT4Q6V0I7 4981 aa5.69□□□□□ -1.5
SNX1-212ENST00000560861 SERP1Q9Y6X1 66 aa5.67□□□□□ -1.5
SNX1-212ENST00000560861 ACYP2P14621 99 aa5.66□□□□□ -1.5
SNX1-212ENST00000560861 H3BS24 57 aa5.65□□□□□ -1.5
SNX1-212ENST00000560861 COA5Q86WW8 74 aa5.65□□□□□ -1.5
SNX1-212ENST00000560861 RBM12B-AS1Q9P1G2 102 aa5.64□□□□□ -1.51
SNX1-212ENST00000560861 RPS28P62857 69 aaKnown RBP5.63□□□□□ -1.51
SNX1-212ENST00000560861 KRTAP4-2Q9BYR5 136 aa5.62□□□□□ -1.51
SNX1-212ENST00000560861 H1FX-AS1Q4G0G2 97 aa5.61□□□□□ -1.51
SNX1-212ENST00000560861 KRTAP9-7A8MTY7 169 aa5.59□□□□□ -1.51
SNX1-212ENST00000560861 FLGP20930 4061 aaPredicted RBP5.58□□□□□ -1.52
SNX1-212ENST00000560861 KRTAP4-11Q9BYQ6 195 aa5.55□□□□□ -1.52
SNX1-212ENST00000560861 LCA10Q71F78 164 aa5.53□□□□□ -1.52
SNX1-212ENST00000560861 S4R3F8 94 aa5.53□□□□□ -1.52
SNX1-212ENST00000560861 CHKB-CPT1BH3BT56 60 aa5.52□□□□□ -1.53
SNX1-212ENST00000560861 SMIM26A0A096LP01 95 aa5.5□□□□□ -1.53
SNX1-212ENST00000560861 LCE5AQ5TCM9 118 aa5.48□□□□□ -1.53
SNX1-212ENST00000560861 SPTSSBQ8NFR3 76 aa5.45□□□□□ -1.54
SNX1-212ENST00000560861 MT1HP80294 61 aa5.43□□□□□ -1.54
SNX1-212ENST00000560861 Q1T7F1 81 aa5.43□□□□□ -1.54
SNX1-212ENST00000560861 LINC01558Q9Y6Z2 57 aa5.43□□□□□ -1.54
SNX1-212ENST00000560861 KRTAP9-3Q9BYQ3 159 aa5.42□□□□□ -1.54
SNX1-212ENST00000560861 CSAG1Q6PB30 78 aa5.41□□□□□ -1.54
SNX1-212ENST00000560861 V9GYY9 64 aa5.37□□□□□ -1.55
SNX1-212ENST00000560861 H0YAA0 97 aa5.35□□□□□ -1.55
SNX1-212ENST00000560861 KRTAP10-6P60371 365 aaPredicted RBP5.33□□□□□ -1.56
SNX1-212ENST00000560861 PRR15LQ9BU68 103 aa5.31□□□□□ -1.56
SNX1-212ENST00000560861 A0A1B0GU69 56 aa5.3□□□□□ -1.56
SNX1-212ENST00000560861 M0R2T5 61 aa5.3□□□□□ -1.56
SNX1-212ENST00000560861 Q5VV11 94 aa5.3□□□□□ -1.56
SNX1-212ENST00000560861 PSPHP1O15172 72 aa5.29□□□□□ -1.56
SNX1-212ENST00000560861 P0C880 135 aa5.27□□□□□ -1.57
SNX1-212ENST00000560861 ADM2Q7Z4H4 148 aa5.27□□□□□ -1.57
SNX1-212ENST00000560861 FSIP2Q5CZC0 6907 aa5.27□□□□□ -1.57
SNX1-212ENST00000560861 SEC61GP60059 68 aa5.24□□□□□ -1.57
SNX1-212ENST00000560861 KRTAP9-8Q9BYQ0 159 aa5.24□□□□□ -1.57
SNX1-212ENST00000560861 MT2AP02795 61 aa5.22□□□□□ -1.57
SNX1-212ENST00000560861 A0A1B0GU33 70 aa5.18□□□□□ -1.58
SNX1-212ENST00000560861 MT1FP04733 61 aa5.18□□□□□ -1.58
SNX1-212ENST00000560861 KRTAP13-4Q3LI77 160 aa5.17□□□□□ -1.58
SNX1-212ENST00000560861 CRCT1Q9UGL9 99 aa5.17□□□□□ -1.58
SNX1-212ENST00000560861 UQCR11O14957 56 aa5.13□□□□□ -1.59
SNX1-212ENST00000560861 A6NED7 52 aa5.11□□□□□ -1.59
SNX1-212ENST00000560861 M0QZ58 72 aa5.11□□□□□ -1.59
SNX1-212ENST00000560861 SPATA8Q6RVD6 105 aa5.11□□□□□ -1.59
SNX1-212ENST00000560861 CRIPTQ9P021 101 aa5.11□□□□□ -1.59
SNX1-212ENST00000560861 KRTAP10-10P60014 251 aa5.08□□□□□ -1.6
SNX1-212ENST00000560861 MIR22HGQ0VDD5 57 aa5.07□□□□□ -1.6
SNX1-212ENST00000560861 SPRR2GQ9BYE4 73 aa5.07□□□□□ -1.6
SNX1-212ENST00000560861 A8MU10 97 aa5.06□□□□□ -1.6
SNX1-212ENST00000560861 CDC42SE1Q9NRR8 79 aa5.06□□□□□ -1.6
SNX1-212ENST00000560861 R4GN34 69 aa5.06□□□□□ -1.6
SNX1-212ENST00000560861 USH2AO75445 5202 aa5□□□□□ -1.61
SNX1-212ENST00000560861 KRTAP5-3Q6L8H2 238 aa4.99□□□□□ -1.61
SNX1-212ENST00000560861 BRK1Q8WUW1 75 aa4.99□□□□□ -1.61
SNX1-212ENST00000560861 SSPOA2VEC9 5147 aa4.99□□□□□ -1.61
SNX1-212ENST00000560861 A0A0D9SG42 100 aa4.97□□□□□ -1.61
SNX1-212ENST00000560861 KRTAP19-8Q3LI54 63 aa4.97□□□□□ -1.61
SNX1-212ENST00000560861 A6NN06 94 aa4.96□□□□□ -1.62
SNX1-212ENST00000560861 KRTAP12-1P59990 96 aa4.95□□□□□ -1.62
SNX1-212ENST00000560861 LINC01554Q52M75 96 aa4.94□□□□□ -1.62
SNX1-212ENST00000560861 KRTAP12-2P59991 146 aa4.92□□□□□ -1.62
SNX1-212ENST00000560861 MT1BP07438 61 aa4.91□□□□□ -1.62
SNX1-212ENST00000560861 PRO0628Q9UI54 55 aa4.88□□□□□ -1.63
SNX1-212ENST00000560861 SPINT4Q6UDR6 99 aa4.85□□□□□ -1.63
SNX1-212ENST00000560861 FCGBPQ9Y6R7 5405 aaPredicted RBP4.85□□□□□ -1.63
SNX1-212ENST00000560861 K7ERS5 55 aa4.8□□□□□ -1.64
SNX1-212ENST00000560861 PLAC4Q8WY50 150 aa4.79□□□□□ -1.64
SNX1-212ENST00000560861 MACF1Q9UPN3 7388 aaKnown RBP4.73□□□□□ -1.65
SNX1-212ENST00000560861 MT1XP80297 61 aa4.72□□□□□ -1.65
SNX1-212ENST00000560861 CAMK2N1Q7Z7J9 78 aa4.72□□□□□ -1.65
SNX1-212ENST00000560861 PMAIP1Q13794 54 aa4.71□□□□□ -1.66
SNX1-212ENST00000560861 C10orf95Q9H7T3 257 aa4.71□□□□□ -1.66
SNX1-212ENST00000560861 KRTAP10-5P60370 271 aa4.7□□□□□ -1.66
SNX1-212ENST00000560861 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
SNX1-212ENST00000560861 ROMO1P60602 79 aa4.66□□□□□ -1.66
SNX1-212ENST00000560861 KRTAP19-6Q3LI70 58 aa4.65□□□□□ -1.67
SNX1-212ENST00000560861 PRO2289Q9P1D8 64 aa4.58□□□□□ -1.68
SNX1-212ENST00000560861 KRTAP15-1Q3LI76 137 aa4.55□□□□□ -1.68
SNX1-212ENST00000560861 KRTAP23-1A1A580 65 aa4.54□□□□□ -1.68
SNX1-212ENST00000560861 KRTAP25-1Q3LHN0 102 aa4.53□□□□□ -1.68
SNX1-212ENST00000560861 KTN1-AS1Q86SY8 53 aa4.53□□□□□ -1.68
SNX1-212ENST00000560861 TNP1P09430 55 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms