RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 SNURFQ9Y675 71 aa6.76□□□□□ -1.33
CPNE3-205ENST00000522240 CCDC179H3BU77 68 aa6.75□□□□□ -1.33
CPNE3-205ENST00000522240 FAT4Q6V0I7 4981 aa6.75□□□□□ -1.33
CPNE3-205ENST00000522240 KRTAP4-1Q9BYQ7 146 aa6.74□□□□□ -1.33
CPNE3-205ENST00000522240 NDUFC1O43677 76 aa6.72□□□□□ -1.33
CPNE3-205ENST00000522240 HRES1P13985 223 aa6.72□□□□□ -1.33
CPNE3-205ENST00000522240 KRTAP9-4Q9BYQ2 154 aa6.67□□□□□ -1.34
CPNE3-205ENST00000522240 CYSTM1Q9H1C7 97 aa6.67□□□□□ -1.34
CPNE3-205ENST00000522240 H7BZZ5 65 aa6.66□□□□□ -1.34
CPNE3-205ENST00000522240 KRTAP9-3Q9BYQ3 159 aa6.66□□□□□ -1.34
CPNE3-205ENST00000522240 SPANXA2-OT1Q8N9U9 137 aa6.65□□□□□ -1.34
CPNE3-205ENST00000522240 KRTAP9-9Q9BYP9 154 aa6.65□□□□□ -1.34
CPNE3-205ENST00000522240 RBM12B-AS1Q9P1G2 102 aa6.65□□□□□ -1.34
CPNE3-205ENST00000522240 C4orf26Q17RF5 130 aa6.64□□□□□ -1.35
CPNE3-205ENST00000522240 COX6B2Q6YFQ2 88 aa6.63□□□□□ -1.35
CPNE3-205ENST00000522240 A8MUN3 132 aa6.59□□□□□ -1.35
CPNE3-205ENST00000522240 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
CPNE3-205ENST00000522240 FAM236DA0A1B0GTK5 79 aa6.57□□□□□ -1.36
CPNE3-205ENST00000522240 FAM236CP0DP71 79 aa6.57□□□□□ -1.36
CPNE3-205ENST00000522240 TMEM258P61165 79 aa6.57□□□□□ -1.36
CPNE3-205ENST00000522240 ATP5EP56381 51 aaPredicted RBP6.56□□□□□ -1.36
CPNE3-205ENST00000522240 KRTAP19-2Q3LHN2 52 aa6.56□□□□□ -1.36
CPNE3-205ENST00000522240 H1FX-AS1Q4G0G2 97 aa6.52□□□□□ -1.37
CPNE3-205ENST00000522240 ACYP2P14621 99 aa6.49□□□□□ -1.37
CPNE3-205ENST00000522240 LCE1DQ5T752 114 aa6.44□□□□□ -1.38
CPNE3-205ENST00000522240 LCE5AQ5TCM9 118 aa6.44□□□□□ -1.38
CPNE3-205ENST00000522240 FSIP2Q5CZC0 6907 aa6.44□□□□□ -1.38
CPNE3-205ENST00000522240 S4R3F8 94 aa6.43□□□□□ -1.38
CPNE3-205ENST00000522240 FLGP20930 4061 aaPredicted RBP6.41□□□□□ -1.38
CPNE3-205ENST00000522240 COA5Q86WW8 74 aa6.41□□□□□ -1.38
CPNE3-205ENST00000522240 CRCT1Q9UGL9 99 aa6.4□□□□□ -1.38
CPNE3-205ENST00000522240 KRTAP4-8A0A0G2JLE6 195 aa6.39□□□□□ -1.39
CPNE3-205ENST00000522240 LCA10Q71F78 164 aa6.38□□□□□ -1.39
CPNE3-205ENST00000522240 CHKB-CPT1BH3BT56 60 aa6.37□□□□□ -1.39
CPNE3-205ENST00000522240 MT1HP80294 61 aa6.36□□□□□ -1.39
CPNE3-205ENST00000522240 SERP1Q9Y6X1 66 aa6.35□□□□□ -1.39
CPNE3-205ENST00000522240 SPTSSBQ8NFR3 76 aa6.33□□□□□ -1.4
CPNE3-205ENST00000522240 CSAG1Q6PB30 78 aa6.3□□□□□ -1.4
CPNE3-205ENST00000522240 M0R2T5 61 aa6.27□□□□□ -1.41
CPNE3-205ENST00000522240 RPS28P62857 69 aaKnown RBP6.24□□□□□ -1.41
CPNE3-205ENST00000522240 H0YAA0 97 aa6.2□□□□□ -1.42
CPNE3-205ENST00000522240 KRTAP4-7Q9BYR0 210 aa6.18□□□□□ -1.42
CPNE3-205ENST00000522240 KRTAP10-6P60371 365 aaPredicted RBP6.16□□□□□ -1.42
CPNE3-205ENST00000522240 SMIM26A0A096LP01 95 aa6.15□□□□□ -1.42
CPNE3-205ENST00000522240 KRTAP4-9Q9BYQ8 210 aa6.15□□□□□ -1.42
CPNE3-205ENST00000522240 LINC01558Q9Y6Z2 57 aa6.11□□□□□ -1.43
CPNE3-205ENST00000522240 V9GYY9 64 aa6.1□□□□□ -1.43
CPNE3-205ENST00000522240 SEC61GP60059 68 aa6.09□□□□□ -1.43
CPNE3-205ENST00000522240 ADM2Q7Z4H4 148 aa6.09□□□□□ -1.43
CPNE3-205ENST00000522240 KRTAP9-8Q9BYQ0 159 aa6.09□□□□□ -1.43
CPNE3-205ENST00000522240 MT2AP02795 61 aa6.07□□□□□ -1.44
CPNE3-205ENST00000522240 Q1T7F1 81 aa6.07□□□□□ -1.44
CPNE3-205ENST00000522240 A0A1B0GU69 56 aa6.06□□□□□ -1.44
CPNE3-205ENST00000522240 PRR15LQ9BU68 103 aa6.04□□□□□ -1.44
CPNE3-205ENST00000522240 KRTAP4-11Q9BYQ6 195 aa6.04□□□□□ -1.44
CPNE3-205ENST00000522240 P0C880 135 aa6.03□□□□□ -1.44
CPNE3-205ENST00000522240 MT1FP04733 61 aa6.02□□□□□ -1.45
CPNE3-205ENST00000522240 KRTAP10-10P60014 251 aa5.99□□□□□ -1.45
CPNE3-205ENST00000522240 CRIPTQ9P021 101 aa5.99□□□□□ -1.45
CPNE3-205ENST00000522240 PRAC1Q96KF2 57 aa5.93□□□□□ -1.46
CPNE3-205ENST00000522240 KRTAP4-2Q9BYR5 136 aa5.93□□□□□ -1.46
CPNE3-205ENST00000522240 A0A1B0GU33 70 aa5.92□□□□□ -1.46
CPNE3-205ENST00000522240 PSPHP1O15172 72 aa5.92□□□□□ -1.46
CPNE3-205ENST00000522240 Q5VV11 94 aa5.91□□□□□ -1.46
CPNE3-205ENST00000522240 R4GN34 69 aa5.91□□□□□ -1.46
CPNE3-205ENST00000522240 USH2AO75445 5202 aa5.9□□□□□ -1.46
CPNE3-205ENST00000522240 M0QZ58 72 aa5.9□□□□□ -1.46
CPNE3-205ENST00000522240 SSPOA2VEC9 5147 aa5.89□□□□□ -1.47
CPNE3-205ENST00000522240 SPRR2GQ9BYE4 73 aa5.88□□□□□ -1.47
CPNE3-205ENST00000522240 UQCR11O14957 56 aa5.86□□□□□ -1.47
CPNE3-205ENST00000522240 FCGBPQ9Y6R7 5405 aaPredicted RBP5.85□□□□□ -1.47
CPNE3-205ENST00000522240 KRTAP13-4Q3LI77 160 aa5.84□□□□□ -1.47
CPNE3-205ENST00000522240 SPATA8Q6RVD6 105 aa5.8□□□□□ -1.48
CPNE3-205ENST00000522240 A6NED7 52 aa5.78□□□□□ -1.48
CPNE3-205ENST00000522240 KRTAP19-8Q3LI54 63 aa5.77□□□□□ -1.49
CPNE3-205ENST00000522240 MIR22HGQ0VDD5 57 aa5.76□□□□□ -1.49
CPNE3-205ENST00000522240 A6NN06 94 aa5.74□□□□□ -1.49
CPNE3-205ENST00000522240 LINC01554Q52M75 96 aa5.74□□□□□ -1.49
CPNE3-205ENST00000522240 A0A0D9SG42 100 aa5.7□□□□□ -1.5
CPNE3-205ENST00000522240 SYNE2Q8WXH0 6885 aaKnown RBP5.7□□□□□ -1.5
CPNE3-205ENST00000522240 A8MU10 97 aa5.69□□□□□ -1.5
CPNE3-205ENST00000522240 MACF1Q9UPN3 7388 aaKnown RBP5.68□□□□□ -1.5
CPNE3-205ENST00000522240 MT1BP07438 61 aa5.68□□□□□ -1.5
CPNE3-205ENST00000522240 LCE1AQ5T7P2 110 aa5.68□□□□□ -1.5
CPNE3-205ENST00000522240 CDC42SE1Q9NRR8 79 aa5.68□□□□□ -1.5
CPNE3-205ENST00000522240 KRTAP12-1P59990 96 aa5.64□□□□□ -1.51
CPNE3-205ENST00000522240 PLAC4Q8WY50 150 aa5.62□□□□□ -1.51
CPNE3-205ENST00000522240 KRTAP12-2P59991 146 aa5.59□□□□□ -1.51
CPNE3-205ENST00000522240 SPINT4Q6UDR6 99 aa5.59□□□□□ -1.51
CPNE3-205ENST00000522240 KRTAP19-6Q3LI70 58 aa5.58□□□□□ -1.52
CPNE3-205ENST00000522240 K7ERS5 55 aa5.56□□□□□ -1.52
CPNE3-205ENST00000522240 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
CPNE3-205ENST00000522240 NDUFAF8A1L188 74 aa5.54□□□□□ -1.52
CPNE3-205ENST00000522240 KRTAP6-3Q3LI67 103 aa5.51□□□□□ -1.53
CPNE3-205ENST00000522240 CAMK2N1Q7Z7J9 78 aa5.51□□□□□ -1.53
CPNE3-205ENST00000522240 KRTAP5-3Q6L8H2 238 aa5.5□□□□□ -1.53
CPNE3-205ENST00000522240 MT3P25713 68 aa5.45□□□□□ -1.54
CPNE3-205ENST00000522240 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
CPNE3-205ENST00000522240 PRO2289Q9P1D8 64 aa5.45□□□□□ -1.54
CPNE3-205ENST00000522240 MT1XP80297 61 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms