RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 LORP23490 312 aaPredicted RBP4.81□□□□□ -1.64
SF3B1-211ENST00000487698 CHKB-CPT1BH3BT56 60 aa4.79□□□□□ -1.64
SF3B1-211ENST00000487698 KRTAP4-1Q9BYQ7 146 aa4.79□□□□□ -1.64
SF3B1-211ENST00000487698 Q1T7F1 81 aa4.78□□□□□ -1.64
SF3B1-211ENST00000487698 KRTAP4-8Q9BYQ9 185 aa4.76□□□□□ -1.65
SF3B1-211ENST00000487698 RBM12B-AS1Q9P1G2 102 aa4.74□□□□□ -1.65
SF3B1-211ENST00000487698 V9GYY9 64 aa4.74□□□□□ -1.65
SF3B1-211ENST00000487698 LINC01558Q9Y6Z2 57 aa4.73□□□□□ -1.65
SF3B1-211ENST00000487698 H1FX-AS1Q4G0G2 97 aa4.72□□□□□ -1.65
SF3B1-211ENST00000487698 SPTSSBQ8NFR3 76 aa4.7□□□□□ -1.66
SF3B1-211ENST00000487698 LCA10Q71F78 164 aa4.69□□□□□ -1.66
SF3B1-211ENST00000487698 KRTAP19-2Q3LHN2 52 aa4.69□□□□□ -1.66
SF3B1-211ENST00000487698 S4R3F8 94 aa4.69□□□□□ -1.66
SF3B1-211ENST00000487698 MUC2Q02817 5179 aa4.68□□□□□ -1.66
SF3B1-211ENST00000487698 PSPHP1O15172 72 aa4.68□□□□□ -1.66
SF3B1-211ENST00000487698 UBR4Q5T4S7 5183 aa4.68□□□□□ -1.66
SF3B1-211ENST00000487698 PRR15LQ9BU68 103 aa4.67□□□□□ -1.66
SF3B1-211ENST00000487698 Q5VV11 94 aa4.66□□□□□ -1.66
SF3B1-211ENST00000487698 KRTAP9-2Q9BYQ4 174 aa4.65□□□□□ -1.67
SF3B1-211ENST00000487698 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-211ENST00000487698 RNF213Q63HN8 5207 aa4.63□□□□□ -1.67
SF3B1-211ENST00000487698 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
SF3B1-211ENST00000487698 A0A1B0GU69 56 aa4.62□□□□□ -1.67
SF3B1-211ENST00000487698 FLGP20930 4061 aaPredicted RBP4.6□□□□□ -1.67
SF3B1-211ENST00000487698 CSAG1Q6PB30 78 aa4.57□□□□□ -1.68
SF3B1-211ENST00000487698 SEC61GP60059 68 aa4.57□□□□□ -1.68
SF3B1-211ENST00000487698 A6NED7 52 aa4.53□□□□□ -1.68
SF3B1-211ENST00000487698 KRTAP10-6P60371 365 aaPredicted RBP4.53□□□□□ -1.68
SF3B1-211ENST00000487698 LCE3BQ5TA77 95 aa4.53□□□□□ -1.68
SF3B1-211ENST00000487698 H0YAA0 97 aa4.51□□□□□ -1.69
SF3B1-211ENST00000487698 BRK1Q8WUW1 75 aa4.51□□□□□ -1.69
SF3B1-211ENST00000487698 UQCR11O14957 56 aa4.49□□□□□ -1.69
SF3B1-211ENST00000487698 FAT4Q6V0I7 4981 aa4.49□□□□□ -1.69
SF3B1-211ENST00000487698 A0A1B0GU33 70 aa4.48□□□□□ -1.69
SF3B1-211ENST00000487698 ADM2Q7Z4H4 148 aa4.48□□□□□ -1.69
SF3B1-211ENST00000487698 A8MU10 97 aa4.48□□□□□ -1.69
SF3B1-211ENST00000487698 P0C880 135 aa4.48□□□□□ -1.69
SF3B1-211ENST00000487698 CDC42SE1Q9NRR8 79 aa4.48□□□□□ -1.69
SF3B1-211ENST00000487698 SPATA8Q6RVD6 105 aa4.46□□□□□ -1.7
SF3B1-211ENST00000487698 MT1HP80294 61 aa4.45□□□□□ -1.7
SF3B1-211ENST00000487698 MIR22HGQ0VDD5 57 aa4.44□□□□□ -1.7
SF3B1-211ENST00000487698 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
SF3B1-211ENST00000487698 PRO0628Q9UI54 55 aa4.43□□□□□ -1.7
SF3B1-211ENST00000487698 KRTAP4-8A0A0G2JLE6 195 aa4.43□□□□□ -1.7
SF3B1-211ENST00000487698 KRTAP13-4Q3LI77 160 aa4.41□□□□□ -1.7
SF3B1-211ENST00000487698 KRTAP9-9Q9BYP9 154 aa4.41□□□□□ -1.7
SF3B1-211ENST00000487698 KRTAP9-4Q9BYQ2 154 aa4.41□□□□□ -1.7
SF3B1-211ENST00000487698 M0QZ58 72 aa4.36□□□□□ -1.71
SF3B1-211ENST00000487698 M0R2T5 61 aa4.36□□□□□ -1.71
SF3B1-211ENST00000487698 R4GN34 69 aa4.31□□□□□ -1.72
SF3B1-211ENST00000487698 KRTAP4-7Q9BYR0 210 aa4.3□□□□□ -1.72
SF3B1-211ENST00000487698 A0A0D9SG42 100 aa4.29□□□□□ -1.72
SF3B1-211ENST00000487698 KRTAP9-8Q9BYQ0 159 aa4.29□□□□□ -1.72
SF3B1-211ENST00000487698 MT2AP02795 61 aa4.28□□□□□ -1.72
SF3B1-211ENST00000487698 CRIPTQ9P021 101 aa4.28□□□□□ -1.72
SF3B1-211ENST00000487698 A6NN06 94 aa4.27□□□□□ -1.73
SF3B1-211ENST00000487698 MT1FP04733 61 aa4.26□□□□□ -1.73
SF3B1-211ENST00000487698 KRTAP19-1Q8IUB9 90 aa4.25□□□□□ -1.73
SF3B1-211ENST00000487698 PMAIP1Q13794 54 aa4.25□□□□□ -1.73
SF3B1-211ENST00000487698 LCE1DQ5T752 114 aa4.24□□□□□ -1.73
SF3B1-211ENST00000487698 KRTAP12-1P59990 96 aa4.24□□□□□ -1.73
SF3B1-211ENST00000487698 KRTAP12-2P59991 146 aa4.23□□□□□ -1.73
SF3B1-211ENST00000487698 LINC01554Q52M75 96 aa4.22□□□□□ -1.73
SF3B1-211ENST00000487698 K7ERS5 55 aa4.21□□□□□ -1.74
SF3B1-211ENST00000487698 KRTAP10-10P60014 251 aa4.21□□□□□ -1.74
SF3B1-211ENST00000487698 SPRR2GQ9BYE4 73 aa4.21□□□□□ -1.74
SF3B1-211ENST00000487698 SPINT4Q6UDR6 99 aa4.18□□□□□ -1.74
SF3B1-211ENST00000487698 KRTAP4-9Q9BYQ8 210 aa4.15□□□□□ -1.75
SF3B1-211ENST00000487698 KRTAP9-3Q9BYQ3 159 aa4.13□□□□□ -1.75
SF3B1-211ENST00000487698 SVIPQ8NHG7 77 aa4.12□□□□□ -1.75
SF3B1-211ENST00000487698 KTN1-AS1Q86SY8 53 aa4.1□□□□□ -1.75
SF3B1-211ENST00000487698 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
SF3B1-211ENST00000487698 KRTAP4-2Q9BYR5 136 aa4.09□□□□□ -1.75
SF3B1-211ENST00000487698 ROMO1P60602 79 aa4.07□□□□□ -1.76
SF3B1-211ENST00000487698 MT1BP07438 61 aa4.04□□□□□ -1.76
SF3B1-211ENST00000487698 CAMK2N1Q7Z7J9 78 aa4.03□□□□□ -1.76
SF3B1-211ENST00000487698 PLAC4Q8WY50 150 aa4.03□□□□□ -1.76
SF3B1-211ENST00000487698 C10orf95Q9H7T3 257 aa4.01□□□□□ -1.77
SF3B1-211ENST00000487698 PRAC1Q96KF2 57 aa4□□□□□ -1.77
SF3B1-211ENST00000487698 KRTAP4-11Q9BYQ6 195 aa3.94□□□□□ -1.78
SF3B1-211ENST00000487698 USH2AO75445 5202 aa3.94□□□□□ -1.78
SF3B1-211ENST00000487698 MT1XP80297 61 aa3.92□□□□□ -1.78
SF3B1-211ENST00000487698 KRTAP10-5P60370 271 aa3.91□□□□□ -1.78
SF3B1-211ENST00000487698 KRTAP25-1Q3LHN0 102 aa3.9□□□□□ -1.79
SF3B1-211ENST00000487698 KRTAP5-3Q6L8H2 238 aa3.9□□□□□ -1.79
SF3B1-211ENST00000487698 TNP1P09430 55 aa3.85□□□□□ -1.79
SF3B1-211ENST00000487698 PRO2289Q9P1D8 64 aa3.83□□□□□ -1.8
SF3B1-211ENST00000487698 H3BS24 57 aa3.81□□□□□ -1.8
SF3B1-211ENST00000487698 SSPOA2VEC9 5147 aa3.8□□□□□ -1.8
SF3B1-211ENST00000487698 KRTAP23-1A1A580 65 aa3.77□□□□□ -1.81
SF3B1-211ENST00000487698 KRTAP19-6Q3LI70 58 aa3.76□□□□□ -1.81
SF3B1-211ENST00000487698 PP632Q6XCG6 107 aa3.76□□□□□ -1.81
SF3B1-211ENST00000487698 KRTAP10-7P60409 375 aaPredicted RBP3.75□□□□□ -1.81
SF3B1-211ENST00000487698 FSIP2Q5CZC0 6907 aa3.75□□□□□ -1.81
SF3B1-211ENST00000487698 KRTAP10-12P60413 245 aa3.71□□□□□ -1.81
SF3B1-211ENST00000487698 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.81
SF3B1-211ENST00000487698 LCE3AQ5TA76 89 aa3.71□□□□□ -1.82
SF3B1-211ENST00000487698 LCE4AQ5TA78 99 aa3.7□□□□□ -1.82
SF3B1-211ENST00000487698 KRTAP8-1Q8IUC2 63 aa3.65□□□□□ -1.83
SF3B1-211ENST00000487698 FCGBPQ9Y6R7 5405 aaPredicted RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms