RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 MT2AP02795 61 aa8.15□□□□□ -1.1
TRIM54-203ENST00000485306 C20orf197Q8N268 126 aa8.15□□□□□ -1.1
TRIM54-203ENST00000485306 KRTAP4-8Q9BYQ9 185 aa8.14□□□□□ -1.11
TRIM54-203ENST00000485306 KLKP1Q107X0 134 aa8.13□□□□□ -1.11
TRIM54-203ENST00000485306 KRTAP10-10P60014 251 aa8.11□□□□□ -1.11
TRIM54-203ENST00000485306 H1FX-AS1Q4G0G2 97 aa8.1□□□□□ -1.11
TRIM54-203ENST00000485306 SNURFQ9Y675 71 aa8.1□□□□□ -1.11
TRIM54-203ENST00000485306 A8MUN3 132 aa8.07□□□□□ -1.12
TRIM54-203ENST00000485306 MT1FP04733 61 aa8.07□□□□□ -1.12
TRIM54-203ENST00000485306 KRTAP3-1Q9BYR8 98 aa8.05□□□□□ -1.12
TRIM54-203ENST00000485306 NDUFC1O43677 76 aa8.04□□□□□ -1.12
TRIM54-203ENST00000485306 USH2AO75445 5202 aa8.01□□□□□ -1.13
TRIM54-203ENST00000485306 KRTAP9-3Q9BYQ3 159 aa8.01□□□□□ -1.13
TRIM54-203ENST00000485306 SPANXA2-OT1Q8N9U9 137 aa8□□□□□ -1.13
TRIM54-203ENST00000485306 DMAC1Q96GE9 116 aa7.98□□□□□ -1.13
TRIM54-203ENST00000485306 KRTAP4-12Q9BQ66 201 aa7.97□□□□□ -1.13
TRIM54-203ENST00000485306 KRTAP19-1Q8IUB9 90 aa7.96□□□□□ -1.14
TRIM54-203ENST00000485306 CCDC179H3BU77 68 aa7.95□□□□□ -1.14
TRIM54-203ENST00000485306 SSPOA2VEC9 5147 aa7.94□□□□□ -1.14
TRIM54-203ENST00000485306 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.93□□□□□ -1.14
TRIM54-203ENST00000485306 S4R3F8 94 aa7.93□□□□□ -1.14
TRIM54-203ENST00000485306 H7BZZ5 65 aa7.92□□□□□ -1.14
TRIM54-203ENST00000485306 KRTAP19-4Q3LI73 84 aa7.91□□□□□ -1.14
TRIM54-203ENST00000485306 ACYP2P14621 99 aa7.9□□□□□ -1.14
TRIM54-203ENST00000485306 CYSTM1Q9H1C7 97 aa7.88□□□□□ -1.15
TRIM54-203ENST00000485306 LCA10Q71F78 164 aa7.86□□□□□ -1.15
TRIM54-203ENST00000485306 CSAG1Q6PB30 78 aa7.84□□□□□ -1.15
TRIM54-203ENST00000485306 KRTAP9-7A8MTY7 169 aa7.8□□□□□ -1.16
TRIM54-203ENST00000485306 LCE3BQ5TA77 95 aa7.79□□□□□ -1.16
TRIM54-203ENST00000485306 FCGBPQ9Y6R7 5405 aaPredicted RBP7.79□□□□□ -1.16
TRIM54-203ENST00000485306 ATP5EP56381 51 aaPredicted RBP7.78□□□□□ -1.16
TRIM54-203ENST00000485306 CHKB-CPT1BH3BT56 60 aa7.75□□□□□ -1.17
TRIM54-203ENST00000485306 TMEM258P61165 79 aa7.75□□□□□ -1.17
TRIM54-203ENST00000485306 PCP4P48539 62 aa7.74□□□□□ -1.17
TRIM54-203ENST00000485306 SPTSSBQ8NFR3 76 aa7.74□□□□□ -1.17
TRIM54-203ENST00000485306 KRTAP19-6Q3LI70 58 aa7.72□□□□□ -1.17
TRIM54-203ENST00000485306 COA5Q86WW8 74 aa7.7□□□□□ -1.18
TRIM54-203ENST00000485306 MACF1Q9UPN3 7388 aaKnown RBP7.64□□□□□ -1.19
TRIM54-203ENST00000485306 H0YAA0 97 aa7.64□□□□□ -1.19
TRIM54-203ENST00000485306 KRTAP9-9Q9BYP9 154 aa7.58□□□□□ -1.2
TRIM54-203ENST00000485306 KRTAP9-4Q9BYQ2 154 aa7.58□□□□□ -1.2
TRIM54-203ENST00000485306 SYNE2Q8WXH0 6885 aaKnown RBP7.56□□□□□ -1.2
TRIM54-203ENST00000485306 ADM2Q7Z4H4 148 aa7.51□□□□□ -1.21
TRIM54-203ENST00000485306 SERP1Q9Y6X1 66 aa7.5□□□□□ -1.21
TRIM54-203ENST00000485306 LCE4AQ5TA78 99 aa7.48□□□□□ -1.21
TRIM54-203ENST00000485306 CRIPTQ9P021 101 aa7.48□□□□□ -1.21
TRIM54-203ENST00000485306 Q5VV11 94 aa7.47□□□□□ -1.21
TRIM54-203ENST00000485306 SPRR2GQ9BYE4 73 aa7.46□□□□□ -1.22
TRIM54-203ENST00000485306 SEC61GP60059 68 aa7.42□□□□□ -1.22
TRIM54-203ENST00000485306 KRTAP19-8Q3LI54 63 aa7.41□□□□□ -1.22
TRIM54-203ENST00000485306 A6NN06 94 aa7.4□□□□□ -1.22
TRIM54-203ENST00000485306 MT1BP07438 61 aa7.39□□□□□ -1.23
TRIM54-203ENST00000485306 P0C880 135 aa7.39□□□□□ -1.23
TRIM54-203ENST00000485306 KRTAP4-8A0A0G2JLE6 195 aa7.38□□□□□ -1.23
TRIM54-203ENST00000485306 KRTAP6-3Q3LI67 103 aa7.38□□□□□ -1.23
TRIM54-203ENST00000485306 RPS28P62857 69 aaKnown RBP7.34□□□□□ -1.23
TRIM54-203ENST00000485306 A0A1B0GU69 56 aa7.31□□□□□ -1.24
TRIM54-203ENST00000485306 LCE1DQ5T752 114 aa7.31□□□□□ -1.24
TRIM54-203ENST00000485306 LINC01558Q9Y6Z2 57 aa7.31□□□□□ -1.24
TRIM54-203ENST00000485306 R4GN34 69 aa7.31□□□□□ -1.24
TRIM54-203ENST00000485306 PRR15LQ9BU68 103 aa7.29□□□□□ -1.24
TRIM54-203ENST00000485306 M0QZ58 72 aa7.28□□□□□ -1.24
TRIM54-203ENST00000485306 V9GYY9 64 aa7.27□□□□□ -1.25
TRIM54-203ENST00000485306 SMIM26A0A096LP01 95 aa7.26□□□□□ -1.25
TRIM54-203ENST00000485306 KRTAP10-5P60370 271 aa7.26□□□□□ -1.25
TRIM54-203ENST00000485306 KRTAP23-1A1A580 65 aa7.25□□□□□ -1.25
TRIM54-203ENST00000485306 A0A1B0GU33 70 aa7.2□□□□□ -1.26
TRIM54-203ENST00000485306 Q1T7F1 81 aa7.2□□□□□ -1.26
TRIM54-203ENST00000485306 KRTAP13-4Q3LI77 160 aa7.1□□□□□ -1.27
TRIM54-203ENST00000485306 KRTAP4-7Q9BYR0 210 aa7.1□□□□□ -1.27
TRIM54-203ENST00000485306 LINC01554Q52M75 96 aa7.09□□□□□ -1.27
TRIM54-203ENST00000485306 PLAC4Q8WY50 150 aa7.06□□□□□ -1.28
TRIM54-203ENST00000485306 PRO2289Q9P1D8 64 aa7.06□□□□□ -1.28
TRIM54-203ENST00000485306 NEBP20929 6669 aa7.06□□□□□ -1.28
TRIM54-203ENST00000485306 UQCR11O14957 56 aa7.04□□□□□ -1.28
TRIM54-203ENST00000485306 PSPHP1O15172 72 aa7.04□□□□□ -1.28
TRIM54-203ENST00000485306 SPATA8Q6RVD6 105 aa7.04□□□□□ -1.28
TRIM54-203ENST00000485306 KRTAP4-9Q9BYQ8 210 aa7.04□□□□□ -1.28
TRIM54-203ENST00000485306 LCE5AQ5TCM9 118 aa7.03□□□□□ -1.28
TRIM54-203ENST00000485306 KRTAP5-9P26371 169 aa7□□□□□ -1.29
TRIM54-203ENST00000485306 MUC12Q9UKN1 5478 aa6.99□□□□□ -1.29
TRIM54-203ENST00000485306 A0A0D9SG42 100 aa6.95□□□□□ -1.3
TRIM54-203ENST00000485306 MT1XP80297 61 aa6.93□□□□□ -1.3
TRIM54-203ENST00000485306 MIR22HGQ0VDD5 57 aa6.91□□□□□ -1.3
TRIM54-203ENST00000485306 A8MU10 97 aa6.88□□□□□ -1.31
TRIM54-203ENST00000485306 KMT2DO14686 5537 aa6.87□□□□□ -1.31
TRIM54-203ENST00000485306 A6NED7 52 aa6.86□□□□□ -1.31
TRIM54-203ENST00000485306 KRTAP12-1P59990 96 aa6.85□□□□□ -1.31
TRIM54-203ENST00000485306 KRTAP20-1Q3LI63 56 aa6.85□□□□□ -1.31
TRIM54-203ENST00000485306 SPINT4Q6UDR6 99 aa6.85□□□□□ -1.31
TRIM54-203ENST00000485306 KRTAP4-11Q9BYQ6 195 aa6.84□□□□□ -1.31
TRIM54-203ENST00000485306 KRTAP12-2P59991 146 aa6.81□□□□□ -1.32
TRIM54-203ENST00000485306 SPRR2FQ96RM1 72 aa6.81□□□□□ -1.32
TRIM54-203ENST00000485306 MDN1Q9NU22 5596 aa6.8□□□□□ -1.32
TRIM54-203ENST00000485306 CAMK2N1Q7Z7J9 78 aa6.8□□□□□ -1.32
TRIM54-203ENST00000485306 KRTAP8-1Q8IUC2 63 aa6.79□□□□□ -1.32
TRIM54-203ENST00000485306 KRTAP4-2Q9BYR5 136 aa6.77□□□□□ -1.33
TRIM54-203ENST00000485306 K7ERS5 55 aa6.73□□□□□ -1.33
TRIM54-203ENST00000485306 SPRR2EP22531 72 aa6.72□□□□□ -1.33
TRIM54-203ENST00000485306 SPRR2BP35325 72 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms