RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 A0A0U1RQV1 116 aa4.25□□□□□ -1.73
SYNE1-225ENST00000481502 RBM12B-AS1Q9P1G2 102 aa4.25□□□□□ -1.73
SYNE1-225ENST00000481502 NDUFC1O43677 76 aa4.24□□□□□ -1.73
SYNE1-225ENST00000481502 HRES1P13985 223 aa4.24□□□□□ -1.73
SYNE1-225ENST00000481502 KRTAP4-1Q9BYQ7 146 aa4.24□□□□□ -1.73
SYNE1-225ENST00000481502 UBR4Q5T4S7 5183 aa4.23□□□□□ -1.73
SYNE1-225ENST00000481502 C20orf197Q8N268 126 aa4.21□□□□□ -1.74
SYNE1-225ENST00000481502 A8MUN3 132 aa4.2□□□□□ -1.74
SYNE1-225ENST00000481502 COX6B2Q6YFQ2 88 aa4.2□□□□□ -1.74
SYNE1-225ENST00000481502 SPANXA2-OT1Q8N9U9 137 aa4.19□□□□□ -1.74
SYNE1-225ENST00000481502 KRTAP9-3Q9BYQ3 159 aa4.17□□□□□ -1.74
SYNE1-225ENST00000481502 C4orf26Q17RF5 130 aa4.16□□□□□ -1.74
SYNE1-225ENST00000481502 KRTAP19-2Q3LHN2 52 aa4.16□□□□□ -1.74
SYNE1-225ENST00000481502 SNURFQ9Y675 71 aa4.16□□□□□ -1.74
SYNE1-225ENST00000481502 MUC2Q02817 5179 aa4.15□□□□□ -1.74
SYNE1-225ENST00000481502 FAM236DA0A1B0GTK5 79 aa4.15□□□□□ -1.75
SYNE1-225ENST00000481502 FAM236CP0DP71 79 aa4.15□□□□□ -1.75
SYNE1-225ENST00000481502 H1FX-AS1Q4G0G2 97 aa4.15□□□□□ -1.75
SYNE1-225ENST00000481502 RNF213Q63HN8 5207 aa4.14□□□□□ -1.75
SYNE1-225ENST00000481502 DMAC1Q96GE9 116 aa4.13□□□□□ -1.75
SYNE1-225ENST00000481502 CCDC179H3BU77 68 aa4.12□□□□□ -1.75
SYNE1-225ENST00000481502 H7BZZ5 65 aa4.12□□□□□ -1.75
SYNE1-225ENST00000481502 ACYP2P14621 99 aa4.11□□□□□ -1.75
SYNE1-225ENST00000481502 KRTAP3-1Q9BYR8 98 aa4.11□□□□□ -1.75
SYNE1-225ENST00000481502 ATP5EP56381 51 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-225ENST00000481502 PCP4P48539 62 aa4.09□□□□□ -1.75
SYNE1-225ENST00000481502 TMEM258P61165 79 aa4.07□□□□□ -1.76
SYNE1-225ENST00000481502 FLGP20930 4061 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-225ENST00000481502 MT1HP80294 61 aa4.05□□□□□ -1.76
SYNE1-225ENST00000481502 CYSTM1Q9H1C7 97 aa4.05□□□□□ -1.76
SYNE1-225ENST00000481502 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
SYNE1-225ENST00000481502 S4R3F8 94 aa4.04□□□□□ -1.76
SYNE1-225ENST00000481502 CSAG1Q6PB30 78 aa4.03□□□□□ -1.76
SYNE1-225ENST00000481502 SPTSSBQ8NFR3 76 aa4.03□□□□□ -1.76
SYNE1-225ENST00000481502 M0R2T5 61 aa4□□□□□ -1.77
SYNE1-225ENST00000481502 LCA10Q71F78 164 aa4□□□□□ -1.77
SYNE1-225ENST00000481502 CHKB-CPT1BH3BT56 60 aa3.99□□□□□ -1.77
SYNE1-225ENST00000481502 H0YAA0 97 aa3.97□□□□□ -1.77
SYNE1-225ENST00000481502 COA5Q86WW8 74 aa3.97□□□□□ -1.77
SYNE1-225ENST00000481502 SERP1Q9Y6X1 66 aa3.94□□□□□ -1.78
SYNE1-225ENST00000481502 KRTAP10-6P60371 365 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-225ENST00000481502 RPS28P62857 69 aaKnown RBP3.92□□□□□ -1.78
SYNE1-225ENST00000481502 CRIPTQ9P021 101 aa3.87□□□□□ -1.79
SYNE1-225ENST00000481502 SEC61GP60059 68 aa3.85□□□□□ -1.79
SYNE1-225ENST00000481502 V9GYY9 64 aa3.85□□□□□ -1.79
SYNE1-225ENST00000481502 MT2AP02795 61 aa3.84□□□□□ -1.79
SYNE1-225ENST00000481502 SMIM26A0A096LP01 95 aa3.82□□□□□ -1.8
SYNE1-225ENST00000481502 ADM2Q7Z4H4 148 aa3.82□□□□□ -1.8
SYNE1-225ENST00000481502 LINC01558Q9Y6Z2 57 aa3.82□□□□□ -1.8
SYNE1-225ENST00000481502 KRTAP10-10P60014 251 aa3.81□□□□□ -1.8
SYNE1-225ENST00000481502 PRR15LQ9BU68 103 aa3.81□□□□□ -1.8
SYNE1-225ENST00000481502 KRTAP23-1A1A580 65 aa3.8□□□□□ -1.8
SYNE1-225ENST00000481502 MT1FP04733 61 aa3.8□□□□□ -1.8
SYNE1-225ENST00000481502 Q1T7F1 81 aa3.8□□□□□ -1.8
SYNE1-225ENST00000481502 A0A1B0GU69 56 aa3.79□□□□□ -1.8
SYNE1-225ENST00000481502 M0QZ58 72 aa3.78□□□□□ -1.8
SYNE1-225ENST00000481502 P0C880 135 aa3.76□□□□□ -1.81
SYNE1-225ENST00000481502 SPRR2GQ9BYE4 73 aa3.76□□□□□ -1.81
SYNE1-225ENST00000481502 R4GN34 69 aa3.75□□□□□ -1.81
SYNE1-225ENST00000481502 A0A1B0GU33 70 aa3.73□□□□□ -1.81
SYNE1-225ENST00000481502 Q5VV11 94 aa3.73□□□□□ -1.81
SYNE1-225ENST00000481502 A6NN06 94 aa3.69□□□□□ -1.82
SYNE1-225ENST00000481502 UQCR11O14957 56 aa3.69□□□□□ -1.82
SYNE1-225ENST00000481502 KRTAP19-8Q3LI54 63 aa3.68□□□□□ -1.82
SYNE1-225ENST00000481502 PSPHP1O15172 72 aa3.63□□□□□ -1.83
SYNE1-225ENST00000481502 KRTAP15-1Q3LI76 137 aa3.63□□□□□ -1.83
SYNE1-225ENST00000481502 KRTAP13-4Q3LI77 160 aa3.61□□□□□ -1.83
SYNE1-225ENST00000481502 SPATA8Q6RVD6 105 aa3.6□□□□□ -1.83
SYNE1-225ENST00000481502 PLAC4Q8WY50 150 aa3.6□□□□□ -1.83
SYNE1-225ENST00000481502 MIR22HGQ0VDD5 57 aa3.59□□□□□ -1.83
SYNE1-225ENST00000481502 MT1BP07438 61 aa3.58□□□□□ -1.84
SYNE1-225ENST00000481502 LINC01554Q52M75 96 aa3.58□□□□□ -1.84
SYNE1-225ENST00000481502 A6NED7 52 aa3.57□□□□□ -1.84
SYNE1-225ENST00000481502 KRTAP19-6Q3LI70 58 aa3.53□□□□□ -1.84
SYNE1-225ENST00000481502 CDC42SE1Q9NRR8 79 aa3.53□□□□□ -1.84
SYNE1-225ENST00000481502 A0A0D9SG42 100 aa3.52□□□□□ -1.85
SYNE1-225ENST00000481502 K7ERS5 55 aa3.52□□□□□ -1.85
SYNE1-225ENST00000481502 PRO2289Q9P1D8 64 aa3.52□□□□□ -1.85
SYNE1-225ENST00000481502 KRTAP12-1P59990 96 aa3.51□□□□□ -1.85
SYNE1-225ENST00000481502 USH2AO75445 5202 aa3.51□□□□□ -1.85
SYNE1-225ENST00000481502 A8MU10 97 aa3.5□□□□□ -1.85
SYNE1-225ENST00000481502 SPINT4Q6UDR6 99 aa3.49□□□□□ -1.85
SYNE1-225ENST00000481502 CRCT1Q9UGL9 99 aa3.49□□□□□ -1.85
SYNE1-225ENST00000481502 KRTAP12-2P59991 146 aa3.47□□□□□ -1.85
SYNE1-225ENST00000481502 KRTAP10-5P60370 271 aa3.47□□□□□ -1.85
SYNE1-225ENST00000481502 CAMK2N1Q7Z7J9 78 aa3.47□□□□□ -1.85
SYNE1-225ENST00000481502 FSIP2Q5CZC0 6907 aa3.44□□□□□ -1.86
SYNE1-225ENST00000481502 MT1XP80297 61 aa3.43□□□□□ -1.86
SYNE1-225ENST00000481502 SSPOA2VEC9 5147 aa3.43□□□□□ -1.86
SYNE1-225ENST00000481502 BRK1Q8WUW1 75 aa3.38□□□□□ -1.87
SYNE1-225ENST00000481502 FCGBPQ9Y6R7 5405 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-225ENST00000481502 TNP1P09430 55 aa3.32□□□□□ -1.88
SYNE1-225ENST00000481502 C10orf95Q9H7T3 257 aa3.32□□□□□ -1.88
SYNE1-225ENST00000481502 KRTAP10-12P60413 245 aa3.31□□□□□ -1.88
SYNE1-225ENST00000481502 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
SYNE1-225ENST00000481502 ROMO1P60602 79 aa3.3□□□□□ -1.88
SYNE1-225ENST00000481502 KRTAP25-1Q3LHN0 102 aa3.3□□□□□ -1.88
SYNE1-225ENST00000481502 KRTAP10-7P60409 375 aaPredicted RBP3.25□□□□□ -1.89
SYNE1-225ENST00000481502 PMAIP1Q13794 54 aa3.24□□□□□ -1.89
SYNE1-225ENST00000481502 MACF1Q9UPN3 7388 aaKnown RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms