RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 MPLKIPQ8TAP9 179 aa6.56□□□□□ -1.36
VPS13D-205ENST00000473099 CHKB-CPT1BH3BT56 60 aa6.53□□□□□ -1.36
VPS13D-205ENST00000473099 KRTAP3-1Q9BYR8 98 aa6.52□□□□□ -1.37
VPS13D-205ENST00000473099 SMIM26A0A096LP01 95 aa6.49□□□□□ -1.37
VPS13D-205ENST00000473099 SPTSSBQ8NFR3 76 aa6.48□□□□□ -1.37
VPS13D-205ENST00000473099 KRTAP4-1Q9BYQ7 146 aa6.48□□□□□ -1.37
VPS13D-205ENST00000473099 H1FX-AS1Q4G0G2 97 aa6.47□□□□□ -1.37
VPS13D-205ENST00000473099 MUC2Q02817 5179 aa6.47□□□□□ -1.37
VPS13D-205ENST00000473099 V9GYY9 64 aa6.42□□□□□ -1.38
VPS13D-205ENST00000473099 S4R3F8 94 aa6.41□□□□□ -1.38
VPS13D-205ENST00000473099 LOC100996750A0A140TA64 210 aa6.37□□□□□ -1.39
VPS13D-205ENST00000473099 KRTAP4-6Q9BYQ5 205 aa6.37□□□□□ -1.39
VPS13D-205ENST00000473099 Q1T7F1 81 aa6.36□□□□□ -1.39
VPS13D-205ENST00000473099 LCA10Q71F78 164 aa6.35□□□□□ -1.39
VPS13D-205ENST00000473099 KRTAP19-2Q3LHN2 52 aa6.33□□□□□ -1.4
VPS13D-205ENST00000473099 LINC01558Q9Y6Z2 57 aa6.32□□□□□ -1.4
VPS13D-205ENST00000473099 CSAG1Q6PB30 78 aa6.29□□□□□ -1.4
VPS13D-205ENST00000473099 PRR15LQ9BU68 103 aa6.28□□□□□ -1.4
VPS13D-205ENST00000473099 SEC61GP60059 68 aa6.27□□□□□ -1.41
VPS13D-205ENST00000473099 KRTAP9-2Q9BYQ4 174 aa6.26□□□□□ -1.41
VPS13D-205ENST00000473099 FAT4Q6V0I7 4981 aa6.25□□□□□ -1.41
VPS13D-205ENST00000473099 A0A1B0GU69 56 aa6.24□□□□□ -1.41
VPS13D-205ENST00000473099 FLGP20930 4061 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-205ENST00000473099 H3BS24 57 aa6.22□□□□□ -1.41
VPS13D-205ENST00000473099 PSPHP1O15172 72 aa6.19□□□□□ -1.42
VPS13D-205ENST00000473099 H0YAA0 97 aa6.18□□□□□ -1.42
VPS13D-205ENST00000473099 Q5VV11 94 aa6.16□□□□□ -1.42
VPS13D-205ENST00000473099 MT1HP80294 61 aa6.09□□□□□ -1.43
VPS13D-205ENST00000473099 ADM2Q7Z4H4 148 aa6.09□□□□□ -1.43
VPS13D-205ENST00000473099 KRTAP9-6A0A140TA67 174 aa6.08□□□□□ -1.44
VPS13D-205ENST00000473099 M0R2T5 61 aa6.08□□□□□ -1.44
VPS13D-205ENST00000473099 SVIPQ8NHG7 77 aa6.08□□□□□ -1.44
VPS13D-205ENST00000473099 UQCR11O14957 56 aa6.07□□□□□ -1.44
VPS13D-205ENST00000473099 A0A1B0GU33 70 aa6.06□□□□□ -1.44
VPS13D-205ENST00000473099 A6NED7 52 aa6.06□□□□□ -1.44
VPS13D-205ENST00000473099 KRTAP10-6P60371 365 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-205ENST00000473099 P0C880 135 aa6.02□□□□□ -1.45
VPS13D-205ENST00000473099 M0QZ58 72 aa5.97□□□□□ -1.45
VPS13D-205ENST00000473099 MIR22HGQ0VDD5 57 aa5.97□□□□□ -1.45
VPS13D-205ENST00000473099 CDC42SE1Q9NRR8 79 aa5.96□□□□□ -1.46
VPS13D-205ENST00000473099 SPATA8Q6RVD6 105 aa5.95□□□□□ -1.46
VPS13D-205ENST00000473099 CRIPTQ9P021 101 aa5.95□□□□□ -1.46
VPS13D-205ENST00000473099 BRK1Q8WUW1 75 aa5.94□□□□□ -1.46
VPS13D-205ENST00000473099 FSIP2Q5CZC0 6907 aa5.94□□□□□ -1.46
VPS13D-205ENST00000473099 R4GN34 69 aa5.92□□□□□ -1.46
VPS13D-205ENST00000473099 CRCT1Q9UGL9 99 aa5.89□□□□□ -1.47
VPS13D-205ENST00000473099 KRTAP4-8Q9BYQ9 185 aa5.87□□□□□ -1.47
VPS13D-205ENST00000473099 KRTAP13-4Q3LI77 160 aa5.86□□□□□ -1.47
VPS13D-205ENST00000473099 KRTAP9-8Q9BYQ0 159 aa5.86□□□□□ -1.47
VPS13D-205ENST00000473099 MT2AP02795 61 aa5.84□□□□□ -1.47
VPS13D-205ENST00000473099 KRTAP10-10P60014 251 aa5.83□□□□□ -1.48
VPS13D-205ENST00000473099 PRO0628Q9UI54 55 aa5.81□□□□□ -1.48
VPS13D-205ENST00000473099 K7ERS5 55 aa5.79□□□□□ -1.48
VPS13D-205ENST00000473099 MT1FP04733 61 aa5.79□□□□□ -1.48
VPS13D-205ENST00000473099 A8MU10 97 aa5.78□□□□□ -1.48
VPS13D-205ENST00000473099 A0A0D9SG42 100 aa5.77□□□□□ -1.49
VPS13D-205ENST00000473099 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.77□□□□□ -1.49
VPS13D-205ENST00000473099 SPRR2GQ9BYE4 73 aa5.76□□□□□ -1.49
VPS13D-205ENST00000473099 A6NN06 94 aa5.75□□□□□ -1.49
VPS13D-205ENST00000473099 LINC01554Q52M75 96 aa5.74□□□□□ -1.49
VPS13D-205ENST00000473099 KRTAP12-1P59990 96 aa5.69□□□□□ -1.5
VPS13D-205ENST00000473099 KRTAP19-1Q8IUB9 90 aa5.69□□□□□ -1.5
VPS13D-205ENST00000473099 SPINT4Q6UDR6 99 aa5.66□□□□□ -1.5
VPS13D-205ENST00000473099 KRTAP9-3Q9BYQ3 159 aa5.66□□□□□ -1.5
VPS13D-205ENST00000473099 KRTAP4-12Q9BQ66 201 aa5.65□□□□□ -1.5
VPS13D-205ENST00000473099 KRTAP12-2P59991 146 aa5.64□□□□□ -1.51
VPS13D-205ENST00000473099 PMAIP1Q13794 54 aa5.63□□□□□ -1.51
VPS13D-205ENST00000473099 KRTAP19-8Q3LI54 63 aa5.61□□□□□ -1.51
VPS13D-205ENST00000473099 PLAC4Q8WY50 150 aa5.59□□□□□ -1.51
VPS13D-205ENST00000473099 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
VPS13D-205ENST00000473099 CAMK2N1Q7Z7J9 78 aa5.54□□□□□ -1.52
VPS13D-205ENST00000473099 USH2AO75445 5202 aa5.51□□□□□ -1.53
VPS13D-205ENST00000473099 MT1BP07438 61 aa5.49□□□□□ -1.53
VPS13D-205ENST00000473099 KRTAP9-9Q9BYP9 154 aa5.49□□□□□ -1.53
VPS13D-205ENST00000473099 KRTAP9-4Q9BYQ2 154 aa5.49□□□□□ -1.53
VPS13D-205ENST00000473099 ROMO1P60602 79 aa5.47□□□□□ -1.53
VPS13D-205ENST00000473099 SSPOA2VEC9 5147 aa5.47□□□□□ -1.53
VPS13D-205ENST00000473099 KRTAP9-7A8MTY7 169 aa5.46□□□□□ -1.54
VPS13D-205ENST00000473099 KTN1-AS1Q86SY8 53 aa5.4□□□□□ -1.54
VPS13D-205ENST00000473099 FCGBPQ9Y6R7 5405 aaPredicted RBP5.4□□□□□ -1.55
VPS13D-205ENST00000473099 KRTAP4-8A0A0G2JLE6 195 aa5.37□□□□□ -1.55
VPS13D-205ENST00000473099 PRO2289Q9P1D8 64 aa5.37□□□□□ -1.55
VPS13D-205ENST00000473099 KRTAP19-4Q3LI73 84 aa5.36□□□□□ -1.55
VPS13D-205ENST00000473099 C10orf95Q9H7T3 257 aa5.36□□□□□ -1.55
VPS13D-205ENST00000473099 KRTAP25-1Q3LHN0 102 aa5.31□□□□□ -1.56
VPS13D-205ENST00000473099 MT1XP80297 61 aa5.3□□□□□ -1.56
VPS13D-205ENST00000473099 TNP1P09430 55 aa5.29□□□□□ -1.56
VPS13D-205ENST00000473099 KRTAP10-5P60370 271 aa5.29□□□□□ -1.56
VPS13D-205ENST00000473099 MACF1Q9UPN3 7388 aaKnown RBP5.29□□□□□ -1.56
VPS13D-205ENST00000473099 SYNE2Q8WXH0 6885 aaKnown RBP5.27□□□□□ -1.57
VPS13D-205ENST00000473099 KRTAP19-6Q3LI70 58 aa5.26□□□□□ -1.57
VPS13D-205ENST00000473099 LCE1DQ5T752 114 aa5.21□□□□□ -1.58
VPS13D-205ENST00000473099 PRAC1Q96KF2 57 aa5.19□□□□□ -1.58
VPS13D-205ENST00000473099 KRTAP4-7Q9BYR0 210 aa5.18□□□□□ -1.58
VPS13D-205ENST00000473099 KRTAP23-1A1A580 65 aa5.16□□□□□ -1.58
VPS13D-205ENST00000473099 PP632Q6XCG6 107 aa5.15□□□□□ -1.59
VPS13D-205ENST00000473099 LCE4AQ5TA78 99 aa5.13□□□□□ -1.59
VPS13D-205ENST00000473099 KRTAP6-3Q3LI67 103 aa5.08□□□□□ -1.6
VPS13D-205ENST00000473099 KRTAP4-9Q9BYQ8 210 aa5.08□□□□□ -1.6
VPS13D-205ENST00000473099 KRTAP10-12P60413 245 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms