RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Ndufb3Q9CQZ6 104 aa12.92□□□□□ -0.34
Shh-201ENSMUST00000002708 Slc25a39Q9D8K8 359 aa12.92□□□□□ -0.34
Shh-201ENSMUST00000002708 Nat6Q9R123 314 aa12.92□□□□□ -0.34
Shh-201ENSMUST00000002708 Spink2Q8BMY7 86 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Ifi27Q8C6G0 260 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Vmn1r216Q8R257 298 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Ptprz1B9EKR1 2312 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 CntfrO88507 372 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Rpp30O88796 268 aaKnown RBP12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Zfp92Q62396 488 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Card19Q9D1I2 183 aa12.91□□□□□ -0.34
Shh-201ENSMUST00000002708 Ighv1-37A0A0A6YW32 117 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Gm21983D6RFS9 131 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Olfr149Q60888 311 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Olfr150Q60895 312 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 EppinQ9DA01 134 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Sptbn1Q62261 2363 aaKnown RBP12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 NbeaQ9EPN1 2936 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Gm5426J3QNM7 103 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Q497N7 227 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Ifitm2Q99J93 144 aa12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Tppp3Q9CRB6 176 aaKnown RBP12.9□□□□□ -0.34
Shh-201ENSMUST00000002708 Ighv14-2A0A075B5R7 117 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Defa35E9QLQ1 93 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Olfr745Q7TRL9 328 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 GaptQ8CB93 157 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Plrg1Q922V4 513 aaKnown RBP12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Olfr1185-ps1F6XP16 303 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Defa6P50704 93 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Olfr16Q62007 309 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Rnf114Q9ET26 229 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv1-69A0A0G2JFS5 117 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 P04944 107 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Tmem95P0DJF3 176 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 CampP51437 172 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Tmem88bQ3TYP4 173 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Olfr1199Q8VF94 310 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Bex1Q9R224 128 aa12.89□□□□□ -0.35
Shh-201ENSMUST00000002708 Cep250Q60952 2414 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Trav6n-6A0A075B6B2 114 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv1-31A0A0A6YWK5 117 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Trbv14A0A140T8L9 115 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Svs5P30933 122 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 SstP60041 116 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Plp1P60202 277 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 MturnQ8CGA4 131 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Olfr1367Q8VFG2 316 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Insig2Q91WG1 225 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv5-6A0A075B5Q0 117 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 BC107364E9Q5A2 140 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Gm26727M0QWT1 121 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Habp2Q8K0D2 558 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Chchd5Q9CQP3 110 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Tctex1d1Q9D5I4 173 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Crybb3Q9JJU9 211 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Tomm40Q9QYA2 361 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 IcosQ9WVS0 200 aa12.88□□□□□ -0.35
Shh-201ENSMUST00000002708 Sptbn4E9PX29 2561 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv6-7A0A0A6YWU3 119 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 LtaP09225 202 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Mamld1P0C6A2 803 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Sox21Q811W0 276 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Rab1bQ9D1G1 201 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Ceacam15A0A0B4J1L0 234 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Defa30E9QPZ2 93 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 P0C1Z5 52 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Spink6Q8BT20 105 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Hyls1Q9CXX0 307 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Gm15294V9GXA7 121 aa12.87□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv1-55A0A075B5W6 117 aa12.86□□□□□ -0.35
Shh-201ENSMUST00000002708 Trav6d-7A0A075B6B0 112 aa12.86□□□□□ -0.35
Shh-201ENSMUST00000002708 Ccl6P27784 116 aa12.86□□□□□ -0.35
Shh-201ENSMUST00000002708 Cd52Q64389 74 aa12.85□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv9-1A0A0B4J1P3 117 aa12.85□□□□□ -0.35
Shh-201ENSMUST00000002708 Col8a1Q00780 744 aa12.85□□□□□ -0.35
Shh-201ENSMUST00000002708 Tcf15Q60756 195 aa12.85□□□□□ -0.35
Shh-201ENSMUST00000002708 G0s2Q61585 103 aa12.85□□□□□ -0.35
Shh-201ENSMUST00000002708 Tmem160Q9D938 188 aa12.85□□□□□ -0.35
Shh-201ENSMUST00000002708 Tmem129Q8K304 362 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 NpbQ8K4P1 119 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 Tctex1d2Q9CQ66 144 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 Ighv8-4A0A0A6YW26 117 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 A0A1Y7VMQ4 148 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 Shisal2aA2A9G7 189 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 RhogP84096 191 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 Gm17359A0A0G2JEB7 487 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 Ormdl3Q9CPZ6 153 aa12.84□□□□□ -0.35
Shh-201ENSMUST00000002708 Hcfc1Q61191 2045 aaKnown RBP12.83□□□□□ -0.36
Shh-201ENSMUST00000002708 Cacng7P62956 275 aa12.83□□□□□ -0.36
Shh-201ENSMUST00000002708 YrdcQ3U5F4 280 aa12.83□□□□□ -0.36
Shh-201ENSMUST00000002708 Tm4sf20Q9CQY8 226 aa12.83□□□□□ -0.36
Shh-201ENSMUST00000002708 Prok1Q14A28 105 aa12.83□□□□□ -0.36
Shh-201ENSMUST00000002708 Msrb2Q78J03 175 aa12.82□□□□□ -0.36
Shh-201ENSMUST00000002708 GlrxQ9QUH0 107 aa12.82□□□□□ -0.36
Shh-201ENSMUST00000002708 Trdv2-1A0A0G2JGB9 116 aa12.82□□□□□ -0.36
Shh-201ENSMUST00000002708 Trdv2-2Q5R1A4 116 aa12.82□□□□□ -0.36
Shh-201ENSMUST00000002708 KprpB2RUR4 657 aa12.81□□□□□ -0.36
Shh-201ENSMUST00000002708 NdpP48744 131 aa12.81□□□□□ -0.36
Shh-201ENSMUST00000002708 P0C913 63 aa12.81□□□□□ -0.36
Shh-201ENSMUST00000002708 Cd24P24807 76 aa12.81□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 59.4 ms