Protein–RNA interactions for Protein: A0A0G2JGB9

Trdv2-1, T cell receptor delta variable 2-1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdv2-1A0A0G2JGB9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trdv2-1A0A0G2JGB9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trdv2-1A0A0G2JGB9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Trdv2-1A0A0G2JGB9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Trdv2-1A0A0G2JGB9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Trdv2-1A0A0G2JGB9 Psd-208ENSMUST00000224556 2034 ntBASIC23.49■■□□□ 1.35
Trdv2-1A0A0G2JGB9 Gm25239-201ENSMUST00000174915 86 ntBASIC23.49■■□□□ 1.35
Trdv2-1A0A0G2JGB9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trdv2-1A0A0G2JGB9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trdv2-1A0A0G2JGB9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trdv2-1A0A0G2JGB9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trdv2-1A0A0G2JGB9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trdv2-1A0A0G2JGB9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Trdv2-1A0A0G2JGB9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Trdv2-1A0A0G2JGB9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Trdv2-1A0A0G2JGB9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Trdv2-1A0A0G2JGB9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trdv2-1A0A0G2JGB9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trdv2-1A0A0G2JGB9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trdv2-1A0A0G2JGB9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trdv2-1A0A0G2JGB9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trdv2-1A0A0G2JGB9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
Trdv2-1A0A0G2JGB9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trdv2-1A0A0G2JGB9 Gm42596-201ENSMUST00000196305 1958 ntBASIC21.62■■□□□ 1.05
Trdv2-1A0A0G2JGB9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Trdv2-1A0A0G2JGB9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trdv2-1A0A0G2JGB9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21.34■■□□□ 1.01
Trdv2-1A0A0G2JGB9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trdv2-1A0A0G2JGB9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.31■■□□□ 1
Trdv2-1A0A0G2JGB9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trdv2-1A0A0G2JGB9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trdv2-1A0A0G2JGB9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trdv2-1A0A0G2JGB9 Gm15042-201ENSMUST00000120212 883 ntBASIC21.24■□□□□ 0.99
Trdv2-1A0A0G2JGB9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trdv2-1A0A0G2JGB9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21.13■□□□□ 0.97
Trdv2-1A0A0G2JGB9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trdv2-1A0A0G2JGB9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trdv2-1A0A0G2JGB9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Trdv2-1A0A0G2JGB9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trdv2-1A0A0G2JGB9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trdv2-1A0A0G2JGB9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21■□□□□ 0.95
Trdv2-1A0A0G2JGB9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Trdv2-1A0A0G2JGB9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trdv2-1A0A0G2JGB9 Gm15045-201ENSMUST00000117359 883 ntBASIC20.81■□□□□ 0.92
Trdv2-1A0A0G2JGB9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trdv2-1A0A0G2JGB9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trdv2-1A0A0G2JGB9 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.72■□□□□ 0.91
Trdv2-1A0A0G2JGB9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Trdv2-1A0A0G2JGB9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trdv2-1A0A0G2JGB9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trdv2-1A0A0G2JGB9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trdv2-1A0A0G2JGB9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trdv2-1A0A0G2JGB9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.6■□□□□ 0.89
Trdv2-1A0A0G2JGB9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trdv2-1A0A0G2JGB9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trdv2-1A0A0G2JGB9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trdv2-1A0A0G2JGB9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trdv2-1A0A0G2JGB9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.51■□□□□ 0.87
Trdv2-1A0A0G2JGB9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trdv2-1A0A0G2JGB9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.46■□□□□ 0.87
Trdv2-1A0A0G2JGB9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trdv2-1A0A0G2JGB9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trdv2-1A0A0G2JGB9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trdv2-1A0A0G2JGB9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trdv2-1A0A0G2JGB9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.44■□□□□ 0.86
Trdv2-1A0A0G2JGB9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trdv2-1A0A0G2JGB9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.37■□□□□ 0.85
Trdv2-1A0A0G2JGB9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trdv2-1A0A0G2JGB9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Trdv2-1A0A0G2JGB9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trdv2-1A0A0G2JGB9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trdv2-1A0A0G2JGB9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trdv2-1A0A0G2JGB9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trdv2-1A0A0G2JGB9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.25■□□□□ 0.83
Trdv2-1A0A0G2JGB9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trdv2-1A0A0G2JGB9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Trdv2-1A0A0G2JGB9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trdv2-1A0A0G2JGB9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trdv2-1A0A0G2JGB9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trdv2-1A0A0G2JGB9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trdv2-1A0A0G2JGB9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trdv2-1A0A0G2JGB9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trdv2-1A0A0G2JGB9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trdv2-1A0A0G2JGB9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trdv2-1A0A0G2JGB9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trdv2-1A0A0G2JGB9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trdv2-1A0A0G2JGB9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trdv2-1A0A0G2JGB9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trdv2-1A0A0G2JGB9 Gm24109-201ENSMUST00000175489 103 ntBASIC19.98■□□□□ 0.79
Trdv2-1A0A0G2JGB9 Zxda-201ENSMUST00000117281 2621 ntBASIC19.97■□□□□ 0.79
Trdv2-1A0A0G2JGB9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.92■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Trdv2-1A0A0G2JGB9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.92■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
Trdv2-1A0A0G2JGB9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trdv2-1A0A0G2JGB9 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms