Protein–RNA interactions for Protein: A0A0G2JGB9

Trdv2-1, T cell receptor delta variable 2-1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trdv2-1A0A0G2JGB9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24,71■■□□□ 1,55
Trdv2-1A0A0G2JGB9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24,31■■□□□ 1,48
Trdv2-1A0A0G2JGB9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23,79■■□□□ 1,4
Trdv2-1A0A0G2JGB9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC23,75■■□□□ 1,39
Trdv2-1A0A0G2JGB9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23,58■■□□□ 1,37
Trdv2-1A0A0G2JGB9 Psd-208ENSMUST00000224556 2034 ntBASIC23,49■■□□□ 1,35
Trdv2-1A0A0G2JGB9 Gm25239-201ENSMUST00000174915 86 ntBASIC23,49■■□□□ 1,35
Trdv2-1A0A0G2JGB9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22,43■■□□□ 1,18
Trdv2-1A0A0G2JGB9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC22,41■■□□□ 1,18
Trdv2-1A0A0G2JGB9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC22,3■■□□□ 1,16
Trdv2-1A0A0G2JGB9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC22,29■■□□□ 1,16
Trdv2-1A0A0G2JGB9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC22,28■■□□□ 1,16
Trdv2-1A0A0G2JGB9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22,22■■□□□ 1,15
Trdv2-1A0A0G2JGB9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22,22■■□□□ 1,15
Trdv2-1A0A0G2JGB9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC22,19■■□□□ 1,14
Trdv2-1A0A0G2JGB9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC22,12■■□□□ 1,13
Trdv2-1A0A0G2JGB9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC21,97■■□□□ 1,11
Trdv2-1A0A0G2JGB9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21,96■■□□□ 1,11
Trdv2-1A0A0G2JGB9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21,96■■□□□ 1,11
Trdv2-1A0A0G2JGB9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21,82■■□□□ 1,08
Trdv2-1A0A0G2JGB9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21,79■■□□□ 1,08
Trdv2-1A0A0G2JGB9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21,76■■□□□ 1,07
Trdv2-1A0A0G2JGB9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC21,68■■□□□ 1,06
Trdv2-1A0A0G2JGB9 Gm42596-201ENSMUST00000196305 1958 ntBASIC21,62■■□□□ 1,05
Trdv2-1A0A0G2JGB9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21,52■■□□□ 1,03
Trdv2-1A0A0G2JGB9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC21,37■■□□□ 1,01
Trdv2-1A0A0G2JGB9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC21,34■■□□□ 1,01
Trdv2-1A0A0G2JGB9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21,33■■□□□ 1,01
Trdv2-1A0A0G2JGB9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21,31■■□□□ 1
Trdv2-1A0A0G2JGB9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC21,31■■□□□ 1
Trdv2-1A0A0G2JGB9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC21,28■■□□□ 1
Trdv2-1A0A0G2JGB9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21,26■□□□□ 0,99
Trdv2-1A0A0G2JGB9 Gm15042-201ENSMUST00000120212 883 ntBASIC21,24■□□□□ 0,99
Trdv2-1A0A0G2JGB9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21,23■□□□□ 0,99
Trdv2-1A0A0G2JGB9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC21,13■□□□□ 0,97
Trdv2-1A0A0G2JGB9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC21,13■□□□□ 0,97
Trdv2-1A0A0G2JGB9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC21,13■□□□□ 0,97
Trdv2-1A0A0G2JGB9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21,11■□□□□ 0,97
Trdv2-1A0A0G2JGB9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21,11■□□□□ 0,97
Trdv2-1A0A0G2JGB9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21,1■□□□□ 0,97
Trdv2-1A0A0G2JGB9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21■□□□□ 0,95
Trdv2-1A0A0G2JGB9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20,99■□□□□ 0,95
Trdv2-1A0A0G2JGB9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20,92■□□□□ 0,94
Trdv2-1A0A0G2JGB9 Gm15045-201ENSMUST00000117359 883 ntBASIC20,81■□□□□ 0,92
Trdv2-1A0A0G2JGB9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20,76■□□□□ 0,91
Trdv2-1A0A0G2JGB9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20,73■□□□□ 0,91
Trdv2-1A0A0G2JGB9 Gm10524-201ENSMUST00000181931 1893 ntBASIC20,72■□□□□ 0,91
Trdv2-1A0A0G2JGB9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20,7■□□□□ 0,9
Trdv2-1A0A0G2JGB9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20,69■□□□□ 0,9
Trdv2-1A0A0G2JGB9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20,69■□□□□ 0,9
Trdv2-1A0A0G2JGB9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20,61■□□□□ 0,89
Trdv2-1A0A0G2JGB9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20,61■□□□□ 0,89
Trdv2-1A0A0G2JGB9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20,6■□□□□ 0,89
Trdv2-1A0A0G2JGB9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC20,6■□□□□ 0,89
Trdv2-1A0A0G2JGB9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC20,59■□□□□ 0,89
Trdv2-1A0A0G2JGB9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20,58■□□□□ 0,89
Trdv2-1A0A0G2JGB9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20,53■□□□□ 0,88
Trdv2-1A0A0G2JGB9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20,51■□□□□ 0,87
Trdv2-1A0A0G2JGB9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20,48■□□□□ 0,87
Trdv2-1A0A0G2JGB9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20,46■□□□□ 0,87
Trdv2-1A0A0G2JGB9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20,46■□□□□ 0,87
Trdv2-1A0A0G2JGB9 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20,45■□□□□ 0,86
Trdv2-1A0A0G2JGB9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC20,45■□□□□ 0,86
Trdv2-1A0A0G2JGB9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20,44■□□□□ 0,86
Trdv2-1A0A0G2JGB9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20,44■□□□□ 0,86
Trdv2-1A0A0G2JGB9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC20,4■□□□□ 0,86
Trdv2-1A0A0G2JGB9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20,37■□□□□ 0,85
Trdv2-1A0A0G2JGB9 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20,36■□□□□ 0,85
Trdv2-1A0A0G2JGB9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20,34■□□□□ 0,85
Trdv2-1A0A0G2JGB9 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20,34■□□□□ 0,85
Trdv2-1A0A0G2JGB9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20,31■□□□□ 0,84
Trdv2-1A0A0G2JGB9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20,29■□□□□ 0,84
Trdv2-1A0A0G2JGB9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20,28■□□□□ 0,84
Trdv2-1A0A0G2JGB9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20,25■□□□□ 0,83
Trdv2-1A0A0G2JGB9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC20,23■□□□□ 0,83
Trdv2-1A0A0G2JGB9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC20,23■□□□□ 0,83
Trdv2-1A0A0G2JGB9 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20,23■□□□□ 0,83
Trdv2-1A0A0G2JGB9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC20,22■□□□□ 0,83
Trdv2-1A0A0G2JGB9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC20,21■□□□□ 0,83
Trdv2-1A0A0G2JGB9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20,19■□□□□ 0,82
Trdv2-1A0A0G2JGB9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20,12■□□□□ 0,81
Trdv2-1A0A0G2JGB9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20,1■□□□□ 0,81
Trdv2-1A0A0G2JGB9 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20,09■□□□□ 0,81
Trdv2-1A0A0G2JGB9 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20,08■□□□□ 0,8
Trdv2-1A0A0G2JGB9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC20,07■□□□□ 0,8
Trdv2-1A0A0G2JGB9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20,06■□□□□ 0,8
Trdv2-1A0A0G2JGB9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC20,03■□□□□ 0,8
Trdv2-1A0A0G2JGB9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC20,03■□□□□ 0,8
Trdv2-1A0A0G2JGB9 Gm24109-201ENSMUST00000175489 103 ntBASIC19,98■□□□□ 0,79
Trdv2-1A0A0G2JGB9 Zxda-201ENSMUST00000117281 2621 ntBASIC19,97■□□□□ 0,79
Trdv2-1A0A0G2JGB9 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC19,95■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC19,94■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19,92■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19,92■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19,92■□□□□ 0,78
Trdv2-1A0A0G2JGB9 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19,92■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19,91■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19,9■□□□□ 0,78
Trdv2-1A0A0G2JGB9 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC19,86■□□□□ 0,77
Trdv2-1A0A0G2JGB9 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC19,84■□□□□ 0,77
Retrieved 100 of 76,532 protein–RNA pairs in 12,1 ms