RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ARL17AQ8IVW1 177 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 C10orf126Q8N4M7 172 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 MIR7-3HGQ8N6C7 128 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 SPANXA2-OT1Q8N9U9 137 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 WFDC10AQ9H1F0 79 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 C16orf95Q9H693 158 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 MGAQ8IWI9 3026 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 ABCA1O95477 2261 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 ABCA2Q9BZC7 2435 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 ZNF292O60281 2723 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 IGLV4-60A0A075B6I1 120 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 TRAV4A0A0B4J268 109 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 A0A0B4J2C4 111 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 H7C2G1 150 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 MP68P56378 58 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 Q6ZTI0 123 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 ZNF418Q8TF45 676 aaPredicted RBP2.47□□□□□ -2.01
VPS29-202ENST00000447578 TMEM263Q8WUH6 116 aaKnown RBP2.47□□□□□ -2.01
VPS29-202ENST00000447578 NOP10Q9NPE3 64 aaKnown RBP2.47□□□□□ -2.01
VPS29-202ENST00000447578 PRO1854Q9UHT4 67 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 NDUFA12Q9UI09 145 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 ERG28Q9UKR5 140 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 RP1L1Q8IWN7 2480 aaPredicted RBP2.47□□□□□ -2.01
VPS29-202ENST00000447578 DMXL1Q9Y485 3027 aa2.47□□□□□ -2.01
VPS29-202ENST00000447578 ANKRD11Q6UB99 2663 aaPredicted RBP2.46□□□□□ -2.01
VPS29-202ENST00000447578 SPTBN2O15020 2390 aa2.46□□□□□ -2.01
VPS29-202ENST00000447578 ASPMQ8IZT6 3477 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 TRBV20-1A0A075B6N2 111 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 TRGV2A0A075B6R0 118 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.46□□□□□ -2.02
VPS29-202ENST00000447578 TRBV10-1A0A0K0K1A3 114 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 J3QR89 54 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 UBE2L6O14933 153 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 TCL1BO95988 128 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 IGLV1-51P01701 117 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 IGHV3-33P01772 117 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 LINC00694P0DN24 101 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 UBE2D3P61077 147 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 NPC2P61916 151 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 UBE2D2P62837 147 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 COX6A2Q02221 97 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 ETDBQ3ZM63 59 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 FAM19A5Q7Z5A7 132 aaPredicted RBP2.46□□□□□ -2.02
VPS29-202ENST00000447578 FAM19A3Q7Z5A8 133 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 DAZ4Q86SG3 579 aaKnown RBP2.46□□□□□ -2.02
VPS29-202ENST00000447578 SMR3AQ99954 134 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 SPANXDQ9BXN6 97 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 SPANXCQ9NY87 97 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 CDKN2A-AS1Q9UH64 79 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 IGF2RP11717 2491 aa2.46□□□□□ -2.02
VPS29-202ENST00000447578 MUC4Q99102 2169 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 TRAV13-1A0A0B4J241 112 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 TRGV4A0A0C4DH28 118 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 K7ERS5 55 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 NDUFA1O15239 70 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 TIMM17BO60830 172 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 HERVK_113P63121 156 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 CIRBPQ14011 172 aaKnown RBP2.45□□□□□ -2.02
VPS29-202ENST00000447578 MIAQ16674 131 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 ZFAND6Q6FIF0 208 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 SBSPONQ8IVN8 264 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 ST20-AS1Q8NBB2 130 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 CR1P17927 2039 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 PIEZO2Q9H5I5 2752 aa2.45□□□□□ -2.02
VPS29-202ENST00000447578 HIVEP3Q5T1R4 2406 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 TLN1Q9Y490 2541 aaKnown RBP2.44□□□□□ -2.02
VPS29-202ENST00000447578 MAP1BP46821 2468 aaKnown RBP2.44□□□□□ -2.02
VPS29-202ENST00000447578 MED13LQ71F56 2210 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 IGKV2-28A0A075B6P5 120 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 IGKV3OR2-268A0A0C4DH90 116 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 TRBV6-4A0A1B0GX49 114 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 C9JAW5 83 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 SLC25A20O43772 301 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 IGKV2D-28P01615 120 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 IFITM1P13164 125 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 INSL3P51460 131 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 ATXN8Q156A1 80 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 MEIG1Q5JSS6 88 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 DAND5Q8N907 189 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 ATP6V0E2Q8NHE4 81 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 PPDPFLQ8WWR9 84 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 ZNF625Q96I27 306 aaPredicted RBP2.44□□□□□ -2.02
VPS29-202ENST00000447578 SIGMAR1Q99720 223 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 GTSF1LQ9H1H1 148 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 CDC42SE2Q9NRR3 84 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 CFAP47Q6ZTR5 3102 aa2.44□□□□□ -2.02
VPS29-202ENST00000447578 TPRP12270 2363 aaKnown RBP2.44□□□□□ -2.02
VPS29-202ENST00000447578 WNK2Q9Y3S1 2297 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 TRBV30A0A0K0K1B3 111 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 IGLV7-43P04211 117 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 DEFB130BP0DP73 79 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 DEFB130AP0DP74 79 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 KRTAP5-7Q6L8G8 165 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 TEN1Q86WV5 123 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 ANKRD29Q8N6D5 301 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 CARD19Q96LW7 228 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 ICOSQ9Y6W8 199 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 DCHS1Q96JQ0 3298 aa2.43□□□□□ -2.02
VPS29-202ENST00000447578 BOD1L1Q8NFC6 3051 aa2.42□□□□□ -2.02
VPS29-202ENST00000447578 DSPP15924 2871 aaKnown RBP2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 273.3 ms