RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Igkv5-37A0A140T8N4 115 aa12.78□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Ube2d2bQ6ZWY6 147 aa12.78□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Tmem101Q91VP7 257 aa12.78□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 FancmQ8BGE5 2021 aa12.78□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 P04945 108 aa12.78□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Gm10306Q9CUK2 115 aa12.78□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Znf431E9QAG8 526 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Dkk1O54908 272 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Tmprss12Q3V0Q7 336 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Mob4Q6PEB6 225 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Rtn4rl2Q7M6Z0 420 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 EpopQ7TNS8 369 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 BC049762Q8C601 163 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Col24a1Q30D77 1733 aa12.77□□□□□ -0.36
Ccdc88b-201ENSMUST00000113440 Ighv1-37A0A0A6YW32 117 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ccl17F6R5P4 103 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 4930583I09RikQ9D2E3 102 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gm10203F6QJ09 66 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Tmem40Q4FJU9 225 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Morn2Q6UL01 79 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 TirapQ99JY1 241 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Trbv12-2A0A0B4J1H1 124 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Akap6E9Q9K8 2307 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Tcl1b2P56841 117 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Tmem256Q5F285 113 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Trpt1Q8K3A2 249 aa12.77□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ca5aP23589 299 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 NrepQ07475 68 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Pxt1Q8K459 51 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Pth2Q91W27 100 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Lypd8Q9D7S0 255 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 V1ra8Q9EQ48 279 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Cbln3Q9JHG0 197 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Igsf23B2RTN2 239 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gm17727E9Q4V7 109 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Jpt2Q6PGH2 190 aaKnown RBP12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 9430097D07RikQ8BS47 195 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Psmg3Q9CZH3 122 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Igkv6-15A0A140T8M5 115 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 C1qtnf9Q4ZJN1 333 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 NgfP01139 241 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Zfp27P10077 819 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Wdr31Q9JHB4 367 aa12.76□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Trav6d-3A0A075B6B3 112 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Olfr364-ps1A0A140T8Q2 307 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Mmp23O88676 391 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 HrkP62816 92 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Trav6-3Q5R1E6 112 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Higd1bQ99JY6 98 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ube2cQ9D1C1 179 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Rasl11aQ6IMB1 242 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ighv5-16A0A0B4J1P4 117 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 SlaQ60898 281 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Samd10Q7TST3 202 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Sec11aQ9R0P6 179 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Klk4Q9Z0M1 255 aa12.75□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Trav7n-5A0A075B604 112 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ripply2Q2WG76 128 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Slc17a9Q8VCL5 447 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ssbp1Q9CYR0 152 aaKnown RBP12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gm13030A2APQ6 143 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gm20825J3QM67 227 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ucp1P12242 307 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Il3raP26952 396 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ssty2Q149W4 227 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gm20854Q62461 227 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Klhdc1Q80YG3 406 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Snrpd3P62320 126 aaKnown RBP12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Msrb2Q78J03 175 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Olfr1380Q7TQT5 311 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Spaca3Q9D9X8 221 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 HelzQ6DFV5 1964 aaKnown RBP12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ighv1-7A0A075B5T7 117 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Zic3Q62521 466 aa12.74□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Pilrb2Q2YFS1 225 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Tmem241Q3UME2 297 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Necap2Q9D1J1 266 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Zdhhc16Q9ESG8 361 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 SonQ9QX47 2444 aaKnown RBP12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Foxc2Q61850 494 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Prss29Q99MS4 279 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Arpc1aQ9R0Q6 370 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Csn3P06796 181 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Ly6c1P0CW02 131 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Dlx6P70397 175 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Fam19a2Q7TPG7 131 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Anapc13Q8R034 74 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Tmem29A2ANF5 204 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Tnfrsf9P20334 256 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Elovl5Q8BHI7 299 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 ChodlQ9CXM0 273 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Dmrtc1c1Q9D410 238 aa12.73□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Jsrp1Q3MI48 332 aa12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Mbd6Q3TY92 1003 aa12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Isg15Q64339 161 aaKnown RBP12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gng5Q80SZ7 68 aa12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Fam208bQ5DTT3 2382 aa12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Prr12E9PYL2 2035 aaKnown RBP12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Pcp4P63054 62 aa12.72□□□□□ -0.37
Ccdc88b-201ENSMUST00000113440 Gm4792Q569Q2 183 aa12.72□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 117.8 ms