Protein–RNA interactions for Protein: A0A075B6B3

Trav6d-3, T cell receptor alpha variable 6D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-3A0A075B6B3 Gm25239-201ENSMUST00000174915 86 ntBASIC28,48■■■□□ 2,15
Trav6d-3A0A075B6B3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27,84■■■□□ 2,05
Trav6d-3A0A075B6B3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26,98■■□□□ 1,91
Trav6d-3A0A075B6B3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26,9■■□□□ 1,9
Trav6d-3A0A075B6B3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC26,01■■□□□ 1,75
Trav6d-3A0A075B6B3 Psd-208ENSMUST00000224556 2034 ntBASIC25,98■■□□□ 1,75
Trav6d-3A0A075B6B3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25,76■■□□□ 1,71
Trav6d-3A0A075B6B3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25,73■■□□□ 1,71
Trav6d-3A0A075B6B3 Gm15042-201ENSMUST00000120212 883 ntBASIC25,55■■□□□ 1,68
Trav6d-3A0A075B6B3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25,38■■□□□ 1,65
Trav6d-3A0A075B6B3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25,23■■□□□ 1,63
Trav6d-3A0A075B6B3 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25,13■■□□□ 1,61
Trav6d-3A0A075B6B3 Gm15045-201ENSMUST00000117359 883 ntBASIC25,08■■□□□ 1,61
Trav6d-3A0A075B6B3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25,05■■□□□ 1,6
Trav6d-3A0A075B6B3 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1,59
Trav6d-3A0A075B6B3 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24,9■■□□□ 1,58
Trav6d-3A0A075B6B3 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24,85■■□□□ 1,57
Trav6d-3A0A075B6B3 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24,82■■□□□ 1,56
Trav6d-3A0A075B6B3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24,67■■□□□ 1,54
Trav6d-3A0A075B6B3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24,53■■□□□ 1,52
Trav6d-3A0A075B6B3 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24,46■■□□□ 1,51
Trav6d-3A0A075B6B3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24,4■■□□□ 1,5
Trav6d-3A0A075B6B3 Gm24109-201ENSMUST00000175489 103 ntBASIC24,38■■□□□ 1,49
Trav6d-3A0A075B6B3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24,38■■□□□ 1,49
Trav6d-3A0A075B6B3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24,37■■□□□ 1,49
Trav6d-3A0A075B6B3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24,36■■□□□ 1,49
Trav6d-3A0A075B6B3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24,35■■□□□ 1,49
Trav6d-3A0A075B6B3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24,31■■□□□ 1,48
Trav6d-3A0A075B6B3 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24,22■■□□□ 1,47
Trav6d-3A0A075B6B3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24,18■■□□□ 1,46
Trav6d-3A0A075B6B3 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24,15■■□□□ 1,46
Trav6d-3A0A075B6B3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24,1■■□□□ 1,45
Trav6d-3A0A075B6B3 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24,07■■□□□ 1,44
Trav6d-3A0A075B6B3 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Trav6d-3A0A075B6B3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1,43
Trav6d-3A0A075B6B3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23,91■■□□□ 1,42
Trav6d-3A0A075B6B3 Gm23366-201ENSMUST00000175022 89 ntBASIC23,9■■□□□ 1,42
Trav6d-3A0A075B6B3 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23,85■■□□□ 1,41
Trav6d-3A0A075B6B3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23,82■■□□□ 1,4
Trav6d-3A0A075B6B3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23,79■■□□□ 1,4
Trav6d-3A0A075B6B3 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23,77■■□□□ 1,4
Trav6d-3A0A075B6B3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23,75■■□□□ 1,39
Trav6d-3A0A075B6B3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23,74■■□□□ 1,39
Trav6d-3A0A075B6B3 Gm10524-201ENSMUST00000181931 1893 ntBASIC23,73■■□□□ 1,39
Trav6d-3A0A075B6B3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23,7■■□□□ 1,38
Trav6d-3A0A075B6B3 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23,7■■□□□ 1,38
Trav6d-3A0A075B6B3 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23,62■■□□□ 1,37
Trav6d-3A0A075B6B3 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23,55■■□□□ 1,36
Trav6d-3A0A075B6B3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23,45■■□□□ 1,34
Trav6d-3A0A075B6B3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC23,43■■□□□ 1,34
Trav6d-3A0A075B6B3 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23,36■■□□□ 1,33
Trav6d-3A0A075B6B3 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23,27■■□□□ 1,32
Trav6d-3A0A075B6B3 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23,16■■□□□ 1,3
Trav6d-3A0A075B6B3 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23,16■■□□□ 1,3
Trav6d-3A0A075B6B3 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23,1■■□□□ 1,29
Trav6d-3A0A075B6B3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23,08■■□□□ 1,29
Trav6d-3A0A075B6B3 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23,07■■□□□ 1,28
Trav6d-3A0A075B6B3 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23,03■■□□□ 1,28
Trav6d-3A0A075B6B3 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23,02■■□□□ 1,28
Trav6d-3A0A075B6B3 Gm42596-201ENSMUST00000196305 1958 ntBASIC23■■□□□ 1,27
Trav6d-3A0A075B6B3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22,96■■□□□ 1,27
Trav6d-3A0A075B6B3 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC22,92■■□□□ 1,26
Trav6d-3A0A075B6B3 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22,91■■□□□ 1,26
Trav6d-3A0A075B6B3 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22,88■■□□□ 1,25
Trav6d-3A0A075B6B3 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC22,87■■□□□ 1,25
Trav6d-3A0A075B6B3 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22,85■■□□□ 1,25
Trav6d-3A0A075B6B3 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22,83■■□□□ 1,25
Trav6d-3A0A075B6B3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22,82■■□□□ 1,24
Trav6d-3A0A075B6B3 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22,8■■□□□ 1,24
Trav6d-3A0A075B6B3 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22,78■■□□□ 1,24
Trav6d-3A0A075B6B3 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC22,77■■□□□ 1,24
Trav6d-3A0A075B6B3 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC22,75■■□□□ 1,23
Trav6d-3A0A075B6B3 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22,74■■□□□ 1,23
Trav6d-3A0A075B6B3 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22,68■■□□□ 1,22
Trav6d-3A0A075B6B3 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22,65■■□□□ 1,22
Trav6d-3A0A075B6B3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22,62■■□□□ 1,21
Trav6d-3A0A075B6B3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC22,6■■□□□ 1,21
Trav6d-3A0A075B6B3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22,59■■□□□ 1,21
Trav6d-3A0A075B6B3 Gm27325-201ENSMUST00000175467 74 ntBASIC22,5■■□□□ 1,19
Trav6d-3A0A075B6B3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC22,49■■□□□ 1,19
Trav6d-3A0A075B6B3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22,48■■□□□ 1,19
Trav6d-3A0A075B6B3 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22,47■■□□□ 1,19
Trav6d-3A0A075B6B3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22,46■■□□□ 1,19
Trav6d-3A0A075B6B3 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,18
Trav6d-3A0A075B6B3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22,43■■□□□ 1,18
Trav6d-3A0A075B6B3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22,39■■□□□ 1,17
Trav6d-3A0A075B6B3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22,39■■□□□ 1,17
Trav6d-3A0A075B6B3 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22,37■■□□□ 1,17
Trav6d-3A0A075B6B3 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22,36■■□□□ 1,17
Trav6d-3A0A075B6B3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22,35■■□□□ 1,17
Trav6d-3A0A075B6B3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22,33■■□□□ 1,17
Trav6d-3A0A075B6B3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22,31■■□□□ 1,16
Trav6d-3A0A075B6B3 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22,3■■□□□ 1,16
Trav6d-3A0A075B6B3 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22,29■■□□□ 1,16
Trav6d-3A0A075B6B3 Gm25238-201ENSMUST00000174914 89 ntBASIC22,24■■□□□ 1,15
Trav6d-3A0A075B6B3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC22,23■■□□□ 1,15
Trav6d-3A0A075B6B3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22,23■■□□□ 1,15
Trav6d-3A0A075B6B3 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22,22■■□□□ 1,15
Trav6d-3A0A075B6B3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22,22■■□□□ 1,15
Trav6d-3A0A075B6B3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22,2■■□□□ 1,14
Retrieved 100 of 76,532 protein–RNA pairs in 11,9 ms