RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	VPS8	P39702	1274 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	SAP1	P39955	897 aa	Known RBP	4.6	□□□□□ -1.67
PRE9	YGR135W	KAP123	P40069	1113 aa	Known RBP	4.6	□□□□□ -1.67
PRE9	YGR135W	BNA1	P47096	177 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	RIM8	P53179	542 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	SNO2	P53823	222 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	VTC3	Q02725	835 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	EIS1	Q05050	843 aa	Known RBP	4.6	□□□□□ -1.67
PRE9	YGR135W	VPS38	Q05919	439 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	RSC58	Q07979	502 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	RCL1	Q08096	367 aa	Predicted RBP	4.6	□□□□□ -1.67
PRE9	YGR135W	NGL1	Q08213	363 aa	Known RBP	4.6	□□□□□ -1.67
PRE9	YGR135W	DCS2	Q12123	353 aa		4.6	□□□□□ -1.67
PRE9	YGR135W	RPL22A	P05749	121 aa	Known RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	GLN4	P13188	809 aa	Known RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	ACE2	P21192	770 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	PEP3	P27801	918 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	DGR2	P32330	852 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	RPD3	P32561	433 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	ECM32	P32644	1121 aa	Known RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	TYE7	P33122	291 aa	Predicted RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	THI80	P35202	319 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	AIM3	P38266	947 aa	Known RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	STL1	P39932	569 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	BUD16	P39988	312 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	SCS2	P40075	244 aa	Known RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	MAD3	P47074	515 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	YJR079W	P47126	109 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	HFM1	P51979	1187 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	ZIP2	P53061	704 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	PCL10	P53124	433 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
PRE9	YGR135W	MRPL13	Q02204	264 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	YKR011C	Q02209	353 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	VIP1	Q06685	1146 aa	Known RBP	4.59	□□□□□ -1.67
PRE9	YGR135W	GRC3	Q07845	632 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	ALE1	Q08548	619 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	PSF3	Q12146	194 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	SVS1	Q12254	260 aa		4.59	□□□□□ -1.67
PRE9	YGR135W	SSK22	P25390	1331 aa	Predicted RBP	4.58	□□□□□ -1.68
PRE9	YGR135W	SPS1	P08458	490 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	SWI6	P09959	803 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	HXT4	P32467	576 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	RPT3	P33298	428 aa	Known RBP	4.58	□□□□□ -1.68
PRE9	YGR135W	XRS2	P33301	854 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	STE13	P33894	931 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	TGL1	P34163	548 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	UBS1	P38290	277 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	YHR202W	P38887	602 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	SPT8	P38915	602 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	DUN1	P39009	513 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	SPC72	P39723	622 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	RIO2	P40160	425 aa	Known RBP	4.58	□□□□□ -1.68
PRE9	YGR135W	EPL1	P43572	832 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	MIC19	P43594	170 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	RAI1	P53063	387 aa	Known RBP	4.58	□□□□□ -1.68
PRE9	YGR135W	YMR210W	Q03649	449 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	HAL9	Q12180	1030 aa		4.58	□□□□□ -1.68
PRE9	YGR135W	SOD2	P00447	233 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	RAD3	P06839	778 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	PRP16	P15938	1071 aa	Predicted RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	AAC3	P18238	307 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	ADE17	P38009	592 aa	Known RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	YSW1	P38280	609 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	OSH3	P38713	996 aa	Known RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	YEL068C	P39977	110 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	PSF2	P40359	213 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	YIL108W	P40483	696 aa	Known RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	EFM4	P40516	257 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	FAF1	P40546	346 aa	Predicted RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	NOP15	P53927	220 aa	Predicted RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	GFD1	Q04839	188 aa	Known RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	STE23	Q06010	1027 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	VAC14	Q06708	880 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	XYL2	Q07993	356 aa		4.57	□□□□□ -1.68
PRE9	YGR135W	RUD3	Q12234	484 aa	Known RBP	4.57	□□□□□ -1.68
PRE9	YGR135W	BNI1	P41832	1953 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	LAM4	P38800	1345 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	HSP82	P02829	709 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	ARD1	P07347	238 aa	Predicted RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	ADH4	P10127	382 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
PRE9	YGR135W	CBP3	P21560	335 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	SRP101	P32916	621 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	SRP68	P38687	599 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	SSZ1	P38788	538 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	SMF1	P38925	575 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	UME6	P39001	836 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	YJR039W	P47107	1121 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	SAP4	P53036	818 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	CUE3	P53137	624 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	RBG2	P53295	368 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	ARC35	P53731	342 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	CBK1	P53894	756 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	ERG5	P54781	538 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	ARP4	P80428	489 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	MTD1	Q02046	320 aa	Known RBP	4.56	□□□□□ -1.68
PRE9	YGR135W	MAK10	Q02197	733 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	HOT1	Q03213	719 aa		4.56	□□□□□ -1.68
PRE9	YGR135W	SXM1	Q04175	944 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 83.3 ms