RNA–Protein interactions for RNA: YOR290C

SNF2, Transcript of Catalytic subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SNF2, Length 5,112 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNF2	YOR290C	ECM5	Q03214	1411 aa		5.1	□□□□□ -1.59
SNF2	YOR290C	PAF1	P38351	445 aa		5.1	□□□□□ -1.59
SNF2	YOR290C	CHD1	P32657	1468 aa		5.1	□□□□□ -1.59
SNF2	YOR290C	LEU3	P08638	886 aa		5.08	□□□□□ -1.6
SNF2	YOR290C	CLB5	P30283	435 aa		5.08	□□□□□ -1.6
SNF2	YOR290C	RPA190	P10964	1664 aa	Known RBP	5.08	□□□□□ -1.6
SNF2	YOR290C	NST1	P53935	1240 aa		5.07	□□□□□ -1.6
SNF2	YOR290C	ENP1	P38333	483 aa	Known RBP	5.06	□□□□□ -1.6
SNF2	YOR290C	ENV11	P53246	860 aa		5.05	□□□□□ -1.6
SNF2	YOR290C	SPT2	P06843	333 aa	Predicted RBP	5.05	□□□□□ -1.6
SNF2	YOR290C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.05	□□□□□ -1.6	not detected
SNF2	YOR290C	SCC2	Q04002	1493 aa		5.04	□□□□□ -1.6
SNF2	YOR290C	CAB3	P36076	571 aa		5.04	□□□□□ -1.6
SNF2	YOR290C	DEF1	P35732	738 aa	Known RBP	5.04	□□□□□ -1.6
SNF2	YOR290C	MYO2	P19524	1574 aa	Known RBP	5.03	□□□□□ -1.6
SNF2	YOR290C	PSH1	Q12161	406 aa		5.03	□□□□□ -1.6
SNF2	YOR290C	GLE1	Q12315	538 aa		5.03	□□□□□ -1.6
SNF2	YOR290C	DNA2	P38859	1522 aa		5.03	□□□□□ -1.6
SNF2	YOR290C	YCF1	P39109	1515 aa	Known RBP	5.03	□□□□□ -1.6
SNF2	YOR290C	RPO21	P04050	1733 aa	Known RBP	5.02	□□□□□ -1.61
SNF2	YOR290C	NMD2	P38798	1089 aa	Known RBP	5.01	□□□□□ -1.61
SNF2	YOR290C	SPO14	P36126	1683 aa		5.01	□□□□□ -1.61
SNF2	YOR290C	RKR1	Q04781	1562 aa		5.01	□□□□□ -1.61
SNF2	YOR290C	POL1	P13382	1468 aa		5.01	□□□□□ -1.61
SNF2	YOR290C	STU1	P38198	1513 aa		5	□□□□□ -1.61
SNF2	YOR290C	SAS3	P34218	831 aa		5	□□□□□ -1.61
SNF2	YOR290C	BTN2	P53286	410 aa		4.99	□□□□□ -1.61
SNF2	YOR290C	NOP8	Q08287	484 aa	Predicted RBP	4.98	□□□□□ -1.61
SNF2	YOR290C	YJL049W	P47048	450 aa		4.98	□□□□□ -1.61
SNF2	YOR290C	ESC2	Q06340	456 aa		4.98	□□□□□ -1.61
SNF2	YOR290C	YPK9	Q12697	1472 aa		4.98	□□□□□ -1.61
SNF2	YOR290C	CLN2	P20438	545 aa		4.98	□□□□□ -1.61
SNF2	YOR290C	ORC1	P54784	914 aa	Predicted RBP	4.98	□□□□□ -1.61
SNF2	YOR290C	SEN54	Q02825	467 aa	Predicted RBP	4.98	□□□□□ -1.61
SNF2	YOR290C	DIP2	Q12220	943 aa	Predicted RBP	4.98	□□□□□ -1.61
SNF2	YOR290C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.97	□□□□□ -1.61	not detected
SNF2	YOR290C	MAK16	P10962	306 aa	Predicted RBP	4.97	□□□□□ -1.61
SNF2	YOR290C	MMS22	Q06164	1454 aa		4.96	□□□□□ -1.61
SNF2	YOR290C	IRC20	Q06554	1556 aa		4.96	□□□□□ -1.62
SNF2	YOR290C	MED2	Q12124	431 aa		4.95	□□□□□ -1.62
SNF2	YOR290C	NOG1	Q02892	647 aa	Known RBP	4.95	□□□□□ -1.62
SNF2	YOR290C	DNF1	P32660	1571 aa		4.94	□□□□□ -1.62
SNF2	YOR290C	RPO31	P04051	1460 aa		4.94	□□□□□ -1.62
SNF2	YOR290C	YKL050C	P35736	922 aa		4.93	□□□□□ -1.62
SNF2	YOR290C	KEX1	P09620	729 aa		4.93	□□□□□ -1.62
SNF2	YOR290C	SYH1	Q02875	849 aa	Known RBP	4.93	□□□□□ -1.62
SNF2	YOR290C	RAD26	P40352	1085 aa		4.93	□□□□□ -1.62
SNF2	YOR290C	UFD4	P33202	1483 aa		4.92	□□□□□ -1.62
SNF2	YOR290C	TOA1	P32773	286 aa		4.92	□□□□□ -1.62
SNF2	YOR290C	NTE1	Q04958	1679 aa		4.92	□□□□□ -1.62
SNF2	YOR290C	YFR016C	P43597	1233 aa	Known RBP	4.92	□□□□□ -1.62
SNF2	YOR290C	BRL1	P38770	471 aa		4.91	□□□□□ -1.62
SNF2	YOR290C	YJL181W	P46987	611 aa		4.91	□□□□□ -1.62
SNF2	YOR290C	YGL081W	P53156	320 aa		4.91	□□□□□ -1.62
SNF2	YOR290C	JJJ1	P53863	590 aa		4.91	□□□□□ -1.62
SNF2	YOR290C	ENP2	P48234	707 aa	Known RBP	4.91	□□□□□ -1.62
SNF2	YOR290C	CLC1	P17891	233 aa		4.91	□□□□□ -1.62
SNF2	YOR290C	YTA6	P40328	754 aa		4.91	□□□□□ -1.62
SNF2	YOR290C	EBP2	P36049	427 aa	Known RBP	4.9	□□□□□ -1.63
SNF2	YOR290C	RIM101	P33400	625 aa		4.89	□□□□□ -1.63
SNF2	YOR290C	YNR021W	P53723	404 aa	Known RBP	4.89	□□□□□ -1.63
SNF2	YOR290C	PLP2	Q12017	286 aa		4.89	□□□□□ -1.63
SNF2	YOR290C	KOG1	P38873	1557 aa		4.89	□□□□□ -1.63
SNF2	YOR290C	RTT106	P40161	455 aa		4.89	□□□□□ -1.63
SNF2	YOR290C	MDS3	P53094	1487 aa		4.89	□□□□□ -1.63
SNF2	YOR290C	TSR1	Q07381	788 aa	Known RBP	4.89	□□□□□ -1.63
SNF2	YOR290C	SMC1	P32908	1225 aa		4.88	□□□□□ -1.63
SNF2	YOR290C	YOR1	P53049	1477 aa		4.88	□□□□□ -1.63
SNF2	YOR290C	HSC82	P15108	705 aa	Known RBP	4.88	□□□□□ -1.63
SNF2	YOR290C	BNI1	P41832	1953 aa		4.87	□□□□□ -1.63
SNF2	YOR290C	SEG2	P34250	1132 aa		4.87	□□□□□ -1.63
SNF2	YOR290C	YIL177C	P40434	1758 aa		4.87	□□□□□ -1.63
SNF2	YOR290C	YJL225C	P40889	1758 aa		4.87	□□□□□ -1.63
SNF2	YOR290C	ECM16	Q04217	1267 aa	Known RBP	4.87	□□□□□ -1.63
SNF2	YOR290C	NOP53	Q12080	455 aa	Known RBP	4.87	□□□□□ -1.63
SNF2	YOR290C	HIF1	Q12373	385 aa		4.87	□□□□□ -1.63
SNF2	YOR290C	NIP100	P33420	868 aa		4.86	□□□□□ -1.63
SNF2	YOR290C	HIS4	P00815	799 aa	Known RBP	4.86	□□□□□ -1.63
SNF2	YOR290C	NMD3	P38861	518 aa	Known RBP	4.86	□□□□□ -1.63
SNF2	YOR290C	PAP2	P53632	584 aa	Known RBP	4.86	□□□□□ -1.63
SNF2	YOR290C	GPN2	Q08726	347 aa	Predicted RBP	4.86	□□□□□ -1.63
SNF2	YOR290C	YPR148C	Q06523	435 aa		4.86	□□□□□ -1.63
SNF2	YOR290C	SMC2	P38989	1170 aa	Known RBP	4.85	□□□□□ -1.63
SNF2	YOR290C	RLF2	Q12495	606 aa		4.85	□□□□□ -1.63
SNF2	YOR290C	TRM732	Q03496	1420 aa		4.85	□□□□□ -1.63
SNF2	YOR290C	SPT5	P27692	1063 aa	Known RBP	4.85	□□□□□ -1.63
SNF2	YOR290C	HUL5	P53119	910 aa		4.85	□□□□□ -1.63
SNF2	YOR290C	SSA1	P10591	642 aa	Known RBP	4.85	□□□□□ -1.63
SNF2	YOR290C	RRP14	P36080	434 aa	Known RBP	4.85	□□□□□ -1.63
SNF2	YOR290C	NUP192	P47054	1683 aa		4.85	□□□□□ -1.63
SNF2	YOR290C	ACE2	P21192	770 aa		4.84	□□□□□ -1.63
SNF2	YOR290C	CKB1	P43639	278 aa		4.83	□□□□□ -1.64
SNF2	YOR290C	CTR9	P89105	1077 aa		4.83	□□□□□ -1.64
SNF2	YOR290C	CDC37	P06101	506 aa	Known RBP	4.83	□□□□□ -1.64
SNF2	YOR290C	VPS9	P54787	451 aa		4.83	□□□□□ -1.64
SNF2	YOR290C	DOP1	Q03921	1698 aa		4.83	□□□□□ -1.64
SNF2	YOR290C	BUD4	P47136	1447 aa		4.82	□□□□□ -1.64
SNF2	YOR290C	LTV1	P34078	463 aa		4.82	□□□□□ -1.64
SNF2	YOR290C	DPB3	P27344	201 aa		4.81	□□□□□ -1.64
SNF2	YOR290C	DOS2	P54858	310 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms