RNA–Protein interactions for RNA: YLL040C

VPS13, Transcript of Protein involved in prospore membrane morphogenesis, yeastyeast

Gene VPS13, Length 9,435 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS13YLL040C TY1B-PR1P0C2I9 1755 aaKnown RBP3.35□□□□□ -1.87
VPS13YLL040C TY1B-PR2P0C2J0 1756 aa3.35□□□□□ -1.87
VPS13YLL040C TY1B-PR3P0C2J1 1755 aaKnown RBP3.35□□□□□ -1.87
VPS13YLL040C TY1B-JR1P47098 1755 aa3.35□□□□□ -1.87
VPS13YLL040C TY1B-ML2Q03434 1755 aaKnown RBP3.35□□□□□ -1.87
VPS13YLL040C TY1B-ER1Q03612 1755 aa3.35□□□□□ -1.87
VPS13YLL040C TY1B-ML1Q04711 1755 aaKnown RBP3.35□□□□□ -1.87
VPS13YLL040C TY1B-GR2Q12269 1755 aa3.35□□□□□ -1.87
VPS13YLL040C TY1B-OLQ12273 1755 aa3.35□□□□□ -1.87
VPS13YLL040C TY1B-PLQ12414 1755 aaKnown RBP3.35□□□□□ -1.87
VPS13YLL040C BUD3P25558 1636 aa3.34□□□□□ -1.87
VPS13YLL040C SSM4P40318 1319 aa3.34□□□□□ -1.87
VPS13YLL040C MET5P47169 1442 aa3.34□□□□□ -1.87
VPS13YLL040C GDB1Q06625 1536 aa3.34□□□□□ -1.87
VPS13YLL040C TY2B-BQ12491 1770 aa3.34□□□□□ -1.88
VPS13YLL040C TRM3Q07527 1436 aa3.33□□□□□ -1.88
VPS13YLL040C YBT1P32386 1661 aa3.33□□□□□ -1.88
VPS13YLL040C TY1B-BRQ12193 1756 aa3.33□□□□□ -1.88
VPS13YLL040C TY1B-GR3Q12316 1755 aa3.33□□□□□ -1.88
VPS13YLL040C TY1B-ORQ92393 1755 aa3.33□□□□□ -1.88
VPS13YLL040C YRF1-4O13559 1382 aa3.33□□□□□ -1.88
VPS13YLL040C YML133CQ03099 1374 aa3.33□□□□□ -1.88
VPS13YLL040C YLL067CQ07888 1374 aa3.33□□□□□ -1.88
VPS13YLL040C YLL066CQ99208 1374 aa3.33□□□□□ -1.88
VPS13YLL040C MHP1P43638 1398 aa3.32□□□□□ -1.88
VPS13YLL040C YSP2Q06681 1438 aa3.31□□□□□ -1.88
VPS13YLL040C ARO1P08566 1588 aaKnown RBP3.31□□□□□ -1.88
VPS13YLL040C RPO21P04050 1733 aaKnown RBP3.31□□□□□ -1.88
VPS13YLL040C RAV1P47104 1357 aa3.29□□□□□ -1.88
VPS13YLL040C TY1B-JR2P47100 1755 aaKnown RBP3.29□□□□□ -1.88
VPS13YLL040C TY1B-ER2Q03619 1755 aa3.29□□□□□ -1.88
VPS13YLL040C TY1B-MR1Q04214 1755 aa3.29□□□□□ -1.88
VPS13YLL040C TY1B-MR2Q04670 1755 aaKnown RBP3.29□□□□□ -1.88
VPS13YLL040C TY1B-LR1Q12088 1755 aaKnown RBP3.29□□□□□ -1.88
VPS13YLL040C TY1B-NL1Q12112 1755 aa3.29□□□□□ -1.88
VPS13YLL040C TY1B-GR1Q12141 1755 aa3.29□□□□□ -1.88
VPS13YLL040C TY1B-BLQ12490 1755 aa3.29□□□□□ -1.88
VPS13YLL040C YRB30P53107 440 aaPredicted RBP3.28□□□□□ -1.88
VPS13YLL040C DNF1P32660 1571 aa3.28□□□□□ -1.88
VPS13YLL040C NTE1Q04958 1679 aa3.28□□□□□ -1.88
VPS13YLL040C YOR093CQ12275 1648 aa3.28□□□□□ -1.89
VPS13YLL040C CFT1Q06632 1357 aaKnown RBP3.27□□□□□ -1.89
VPS13YLL040C RPP0P05317 312 aaKnown RBP3.27□□□□□ -1.89
VPS13YLL040C NOP2P40991 618 aaKnown RBP3.27□□□□□ -1.89
VPS13YLL040C POL5P39985 1022 aaKnown RBP3.27□□□□□ -1.89
VPS13YLL040C RPA190P10964 1664 aaKnown RBP3.26□□□□□ -1.89
VPS13YLL040C YFR016CP43597 1233 aaKnown RBP3.26□□□□□ -1.89
VPS13YLL040C RTC1Q08281 1341 aa3.25□□□□□ -1.89
VPS13YLL040C LTE1P07866 1435 aa3.23□□□□□ -1.89
VPS13YLL040C NSR1P27476 414 aaKnown RBP RIP-Chip data3.23□□□□□ -1.89not detected
VPS13YLL040C CHC1P22137 1653 aaKnown RBP3.23□□□□□ -1.89
VPS13YLL040C BFR2Q06631 534 aaKnown RBP3.22□□□□□ -1.89
VPS13YLL040C IML1P47170 1584 aa3.22□□□□□ -1.89
VPS13YLL040C MET10P39692 1035 aa3.21□□□□□ -1.9
VPS13YLL040C ABP1P15891 592 aaKnown RBP3.2□□□□□ -1.9
VPS13YLL040C SIR4P11978 1358 aa3.19□□□□□ -1.9
VPS13YLL040C DNF2Q12675 1612 aa3.19□□□□□ -1.9
VPS13YLL040C YIR014WP40570 242 aa3.19□□□□□ -1.9
VPS13YLL040C NUP157P40064 1391 aaKnown RBP3.18□□□□□ -1.9
VPS13YLL040C PRS1P32895 427 aaKnown RBP3.18□□□□□ -1.9
VPS13YLL040C VMR1P38735 1592 aa3.17□□□□□ -1.9
VPS13YLL040C SPO14P36126 1683 aa3.17□□□□□ -1.9
VPS13YLL040C NUP188P52593 1655 aaKnown RBP3.17□□□□□ -1.9
VPS13YLL040C BCK1Q01389 1478 aa3.15□□□□□ -1.9
VPS13YLL040C SAS10Q12136 610 aaPredicted RBP3.15□□□□□ -1.9
VPS13YLL040C SPT7P35177 1332 aa3.15□□□□□ -1.91
VPS13YLL040C NOP7P53261 605 aaKnown RBP3.15□□□□□ -1.91
VPS13YLL040C PDR11P40550 1411 aa3.15□□□□□ -1.91
VPS13YLL040C SEC7P11075 2009 aaKnown RBP3.14□□□□□ -1.91
VPS13YLL040C ESL2P36168 1195 aa3.14□□□□□ -1.91
VPS13YLL040C PAF1P38351 445 aa3.14□□□□□ -1.91
VPS13YLL040C BNR1P40450 1375 aa3.14□□□□□ -1.91
VPS13YLL040C DOP1Q03921 1698 aa3.13□□□□□ -1.91
VPS13YLL040C URN1Q06525 465 aaKnown RBP3.12□□□□□ -1.91
VPS13YLL040C DRS2P39524 1355 aa3.12□□□□□ -1.91
VPS13YLL040C CDC45Q08032 650 aa3.12□□□□□ -1.91
VPS13YLL040C PSK1P31374 1356 aa3.12□□□□□ -1.91
VPS13YLL040C VPS27P40343 622 aaKnown RBP3.12□□□□□ -1.91
VPS13YLL040C BUD21Q08492 214 aaPredicted RBP3.11□□□□□ -1.91
VPS13YLL040C YRF1-1P0CX20 1796 aa3.11□□□□□ -1.91
VPS13YLL040C YRF1-5P0CX21 1796 aa3.11□□□□□ -1.91
VPS13YLL040C YRF1-8P0CX22 1796 aa3.11□□□□□ -1.91
VPS13YLL040C NAB6Q03735 1134 aaKnown RBP RIP-Chip data3.1□□□□□ -1.91not detected
VPS13YLL040C NUP192P47054 1683 aa3.1□□□□□ -1.91
VPS13YLL040C TAP42Q04372 366 aa3.1□□□□□ -1.91
VPS13YLL040C RTT106P40161 455 aa3.1□□□□□ -1.91
VPS13YLL040C EDE1P34216 1381 aa3.09□□□□□ -1.91
VPS13YLL040C FKH1P40466 484 aa3.09□□□□□ -1.92
VPS13YLL040C PRP43P53131 767 aaKnown RBP3.08□□□□□ -1.92
VPS13YLL040C BUD27P43573 796 aaKnown RBP RIP-Chip data3.08□□□□□ -1.92not detected
VPS13YLL040C ECM16Q04217 1267 aaKnown RBP3.07□□□□□ -1.92
VPS13YLL040C DNF3Q12674 1656 aa3.07□□□□□ -1.92
VPS13YLL040C LSP1Q12230 341 aaKnown RBP3.07□□□□□ -1.92
VPS13YLL040C HGH1P48362 394 aaKnown RBP3.07□□□□□ -1.92
VPS13YLL040C PDS5Q04264 1277 aa3.07□□□□□ -1.92
VPS13YLL040C LYS2P07702 1392 aa3.07□□□□□ -1.92
VPS13YLL040C APC1P53886 1748 aa3.07□□□□□ -1.92
VPS13YLL040C KRE5P22023 1365 aa3.06□□□□□ -1.92
VPS13YLL040C IFH1P39520 1085 aa3.05□□□□□ -1.92
VPS13YLL040C NAP1P25293 417 aaKnown RBP3.04□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms