RNA–Protein interactions for RNA: YHR099W

TRA1, Transcript of Subunit of SAGA and NuA4 histone acetyltransferase complexes, yeastyeast

Gene TRA1, Length 11,235 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRA1YHR099W BRL1P38770 471 aa2.9□□□□□ -1.95
TRA1YHR099W SMC3P47037 1230 aa2.9□□□□□ -1.95
TRA1YHR099W CLC1P17891 233 aa2.89□□□□□ -1.95
TRA1YHR099W SSE1P32589 693 aaKnown RBP2.89□□□□□ -1.95
TRA1YHR099W ITC1P53125 1264 aa2.89□□□□□ -1.95
TRA1YHR099W ESF2P53743 316 aaKnown RBP2.89□□□□□ -1.95
TRA1YHR099W REI1P38344 393 aaPredicted RBP2.89□□□□□ -1.95
TRA1YHR099W IFH1P39520 1085 aa2.89□□□□□ -1.95
TRA1YHR099W RRP14P36080 434 aaKnown RBP2.89□□□□□ -1.95
TRA1YHR099W SMI1P32566 505 aa2.89□□□□□ -1.95
TRA1YHR099W DJP1P40564 432 aa2.88□□□□□ -1.95
TRA1YHR099W KEX1P09620 729 aa2.88□□□□□ -1.95
TRA1YHR099W EAP1P36041 632 aaKnown RBP2.88□□□□□ -1.95
TRA1YHR099W SEG2P34250 1132 aa2.88□□□□□ -1.95
TRA1YHR099W FUN30P31380 1131 aa2.87□□□□□ -1.95
TRA1YHR099W RCF1Q03713 159 aa2.87□□□□□ -1.95
TRA1YHR099W GPN2Q08726 347 aaPredicted RBP2.87□□□□□ -1.95
TRA1YHR099W BDP1P46678 594 aa2.87□□□□□ -1.95
TRA1YHR099W PIL1P53252 339 aaKnown RBP2.87□□□□□ -1.95
TRA1YHR099W TOM71P38825 639 aaKnown RBP2.87□□□□□ -1.95
TRA1YHR099W ACE2P21192 770 aa2.86□□□□□ -1.95
TRA1YHR099W SQT1P35184 431 aa2.86□□□□□ -1.95
TRA1YHR099W CAJ1P39101 391 aa2.86□□□□□ -1.95
TRA1YHR099W MPC54Q08550 464 aa2.86□□□□□ -1.95
TRA1YHR099W VPS64Q03944 604 aa2.86□□□□□ -1.95
TRA1YHR099W YGR130CP53278 816 aa2.86□□□□□ -1.95
TRA1YHR099W SUP35P05453 685 aaKnown RBP2.86□□□□□ -1.95
TRA1YHR099W CDC48P25694 835 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W ENP2P48234 707 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W RPN7Q06103 429 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W SPP41P38904 1435 aa2.85□□□□□ -1.95
TRA1YHR099W XRN1P22147 1528 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W MED2Q12124 431 aa2.85□□□□□ -1.95
TRA1YHR099W MAK16P10962 306 aaPredicted RBP2.85□□□□□ -1.95
TRA1YHR099W SET2P46995 733 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W HSP104P31539 908 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W RUD3Q12234 484 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W PDI1P17967 522 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W NAS2P40555 220 aa2.85□□□□□ -1.95
TRA1YHR099W RAT1Q02792 1006 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W IMH1Q06704 911 aaKnown RBP2.85□□□□□ -1.95
TRA1YHR099W YKL050CP35736 922 aa2.85□□□□□ -1.95
TRA1YHR099W BET4Q00618 327 aa2.85□□□□□ -1.95
TRA1YHR099W GIR2Q03768 265 aaPredicted RBP2.85□□□□□ -1.95
TRA1YHR099W HGH1P48362 394 aaKnown RBP2.84□□□□□ -1.95
TRA1YHR099W ACF4P47129 309 aa2.84□□□□□ -1.95
TRA1YHR099W RPN1P38764 993 aaKnown RBP2.84□□□□□ -1.95
TRA1YHR099W ESF1Q06344 628 aaKnown RBP2.84□□□□□ -1.95
TRA1YHR099W IOC2Q12072 812 aa2.84□□□□□ -1.95
TRA1YHR099W BIK1P11709 440 aa2.84□□□□□ -1.96
TRA1YHR099W PET123P17558 318 aa2.84□□□□□ -1.96
TRA1YHR099W NOP8Q08287 484 aaPredicted RBP2.84□□□□□ -1.96
TRA1YHR099W RKM3P38222 552 aa2.84□□□□□ -1.96
TRA1YHR099W PDR10P51533 1564 aa2.84□□□□□ -1.96
TRA1YHR099W PET111P08468 800 aa2.84□□□□□ -1.96
TRA1YHR099W RGA1P39083 1007 aa2.84□□□□□ -1.96
TRA1YHR099W CIK1Q01649 594 aa2.84□□□□□ -1.96
TRA1YHR099W SVF1Q05515 481 aa2.84□□□□□ -1.96
TRA1YHR099W TOA1P32773 286 aa2.83□□□□□ -1.96
TRA1YHR099W RRP17Q04031 235 aaPredicted RBP2.83□□□□□ -1.96
TRA1YHR099W PEP1P32319 1579 aa2.83□□□□□ -1.96
TRA1YHR099W AVT3P36062 692 aa2.83□□□□□ -1.96
TRA1YHR099W CTR9P89105 1077 aa2.83□□□□□ -1.96
TRA1YHR099W APL5Q08951 932 aaKnown RBP2.83□□□□□ -1.96
TRA1YHR099W TOP1P04786 769 aa2.83□□□□□ -1.96
TRA1YHR099W CDC34P14682 295 aa2.83□□□□□ -1.96
TRA1YHR099W APE4P38821 490 aa2.83□□□□□ -1.96
TRA1YHR099W TPM2P40414 161 aa2.83□□□□□ -1.96
TRA1YHR099W NUP170P38181 1502 aa2.83□□□□□ -1.96
TRA1YHR099W CWC22P53333 577 aaKnown RBP2.82□□□□□ -1.96
TRA1YHR099W SGM1P47166 707 aa2.82□□□□□ -1.96
TRA1YHR099W HIF1Q12373 385 aa2.82□□□□□ -1.96
TRA1YHR099W BUD27P43573 796 aaKnown RBP RIP-Chip data2.82□□□□□ -1.96not detected
TRA1YHR099W NIP100P33420 868 aa2.82□□□□□ -1.96
TRA1YHR099W RPA34P47006 233 aaPredicted RBP2.82□□□□□ -1.96
TRA1YHR099W SPC110P32380 944 aa2.81□□□□□ -1.96
TRA1YHR099W KEL1P38853 1164 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W SEC27P41811 889 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W RPS0BP46654 252 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W BEM4P39011 633 aa2.81□□□□□ -1.96
TRA1YHR099W DOS2P54858 310 aa2.81□□□□□ -1.96
TRA1YHR099W URB2P47108 1174 aa2.81□□□□□ -1.96
TRA1YHR099W PSD2P53037 1138 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W PAP2P53632 584 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W MDM38Q08179 573 aa2.81□□□□□ -1.96
TRA1YHR099W SPT2P06843 333 aaPredicted RBP2.81□□□□□ -1.96
TRA1YHR099W NOC2P39744 710 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W TCB2P48231 1178 aa2.81□□□□□ -1.96
TRA1YHR099W YGL081WP53156 320 aa2.81□□□□□ -1.96
TRA1YHR099W DIP2Q12220 943 aaPredicted RBP2.81□□□□□ -1.96
TRA1YHR099W YJL181WP46987 611 aa2.81□□□□□ -1.96
TRA1YHR099W PDR5P33302 1511 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W CLB1P24868 471 aa2.81□□□□□ -1.96
TRA1YHR099W CSE1P33307 960 aa2.81□□□□□ -1.96
TRA1YHR099W BRE2P43132 505 aa2.81□□□□□ -1.96
TRA1YHR099W GIM3P53900 129 aa2.81□□□□□ -1.96
TRA1YHR099W SUB1P54000 292 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W ECM16Q04217 1267 aaKnown RBP2.81□□□□□ -1.96
TRA1YHR099W HUL5P53119 910 aa2.81□□□□□ -1.96
TRA1YHR099W PRT1P06103 763 aaKnown RBP2.81□□□□□ -1.96
Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms