RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W TY1B-PR2P0C2J0 1756 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-PR3P0C2J1 1755 aaKnown RBP8.07□□□□□ -1.12
VPS29YHR012W TY1B-JR1P47098 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-ML2Q03434 1755 aaKnown RBP8.07□□□□□ -1.12
VPS29YHR012W TY1B-ER1Q03612 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-ML1Q04711 1755 aaKnown RBP8.07□□□□□ -1.12
VPS29YHR012W TY1B-GR2Q12269 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-OLQ12273 1755 aa8.07□□□□□ -1.12
VPS29YHR012W TY1B-PLQ12414 1755 aaKnown RBP8.07□□□□□ -1.12
VPS29YHR012W TY2B-BQ12491 1770 aa8.07□□□□□ -1.12
VPS29YHR012W SLX5P32828 619 aaKnown RBP8.07□□□□□ -1.12
VPS29YHR012W ITT1Q04638 464 aa8.05□□□□□ -1.12
VPS29YHR012W POL1P13382 1468 aa8.05□□□□□ -1.12
VPS29YHR012W ABP1P15891 592 aaKnown RBP8.04□□□□□ -1.12
VPS29YHR012W TY1B-DR3Q99231 1755 aa8.04□□□□□ -1.12
VPS29YHR012W SMC4Q12267 1418 aa8.03□□□□□ -1.12
VPS29YHR012W BNI1P41832 1953 aa8.02□□□□□ -1.12
VPS29YHR012W SPP41P38904 1435 aa7.99□□□□□ -1.13
VPS29YHR012W YOR1P53049 1477 aa7.99□□□□□ -1.13
VPS29YHR012W DRS2P39524 1355 aa7.97□□□□□ -1.13
VPS29YHR012W NUP159P40477 1460 aa7.97□□□□□ -1.13
VPS29YHR012W STU1P38198 1513 aa7.97□□□□□ -1.13
VPS29YHR012W MMS1Q06211 1407 aa7.95□□□□□ -1.14
VPS29YHR012W TSC11P40061 1430 aa7.95□□□□□ -1.14
VPS29YHR012W YRF1-1P0CX20 1796 aa7.94□□□□□ -1.14
VPS29YHR012W YRF1-5P0CX21 1796 aa7.94□□□□□ -1.14
VPS29YHR012W YRF1-8P0CX22 1796 aa7.94□□□□□ -1.14
VPS29YHR012W VPS15P22219 1454 aa7.94□□□□□ -1.14
VPS29YHR012W TY1B-JR2P47100 1755 aaKnown RBP7.91□□□□□ -1.14
VPS29YHR012W TY1B-ER2Q03619 1755 aa7.91□□□□□ -1.14
VPS29YHR012W TY1B-MR1Q04214 1755 aa7.91□□□□□ -1.14
VPS29YHR012W TY1B-MR2Q04670 1755 aaKnown RBP7.91□□□□□ -1.14
VPS29YHR012W TY1B-LR1Q12088 1755 aaKnown RBP7.91□□□□□ -1.14
VPS29YHR012W TY1B-NL1Q12112 1755 aa7.91□□□□□ -1.14
VPS29YHR012W TY1B-GR1Q12141 1755 aa7.91□□□□□ -1.14
VPS29YHR012W TY1B-BLQ12490 1755 aa7.91□□□□□ -1.14
VPS29YHR012W VTH1P40438 1549 aa7.89□□□□□ -1.15
VPS29YHR012W VTH2P40890 1549 aa7.89□□□□□ -1.15
VPS29YHR012W MYO4P32492 1471 aa7.89□□□□□ -1.15
VPS29YHR012W YTA7P40340 1379 aa7.89□□□□□ -1.15
VPS29YHR012W MET10P39692 1035 aa7.89□□□□□ -1.15
VPS29YHR012W YFR006WP43590 535 aa7.89□□□□□ -1.15
VPS29YHR012W BFR2Q06631 534 aaKnown RBP7.89□□□□□ -1.15
VPS29YHR012W NTE1Q04958 1679 aa7.88□□□□□ -1.15
VPS29YHR012W STH1P32597 1359 aa7.87□□□□□ -1.15
VPS29YHR012W RPO21P04050 1733 aaKnown RBP7.86□□□□□ -1.15
VPS29YHR012W RTT106P40161 455 aa7.85□□□□□ -1.15
VPS29YHR012W SNT2P53127 1403 aa7.85□□□□□ -1.15
VPS29YHR012W BCH2P36122 765 aa7.84□□□□□ -1.15
VPS29YHR012W NUP170P38181 1502 aa7.8□□□□□ -1.16
VPS29YHR012W SNQ2P32568 1501 aaKnown RBP7.78□□□□□ -1.16
VPS29YHR012W IRC20Q06554 1556 aa7.77□□□□□ -1.17
VPS29YHR012W DNF2Q12675 1612 aa7.75□□□□□ -1.17
VPS29YHR012W RIM101P33400 625 aa7.75□□□□□ -1.17
VPS29YHR012W ULS1Q08562 1619 aa7.73□□□□□ -1.17
VPS29YHR012W TAF7Q05021 590 aa7.72□□□□□ -1.17
VPS29YHR012W SPO14P36126 1683 aa7.72□□□□□ -1.17
VPS29YHR012W PDR12Q02785 1511 aa7.72□□□□□ -1.17
VPS29YHR012W TRM3Q07527 1436 aa7.69□□□□□ -1.18
VPS29YHR012W BUD3P25558 1636 aa7.69□□□□□ -1.18
VPS29YHR012W IQG1Q12280 1495 aa7.68□□□□□ -1.18
VPS29YHR012W MST1P07236 462 aa7.68□□□□□ -1.18
VPS29YHR012W PDR10P51533 1564 aa7.67□□□□□ -1.18
VPS29YHR012W MLP2P40457 1679 aa7.67□□□□□ -1.18
VPS29YHR012W DOP1Q03921 1698 aa7.67□□□□□ -1.18
VPS29YHR012W YBL029C-AQ3E756 94 aa7.66□□□□□ -1.18
VPS29YHR012W NUP157P40064 1391 aaKnown RBP7.66□□□□□ -1.18
VPS29YHR012W GDB1Q06625 1536 aa7.63□□□□□ -1.19
VPS29YHR012W YOR238WQ08634 303 aa7.63□□□□□ -1.19
VPS29YHR012W SAS10Q12136 610 aaPredicted RBP7.63□□□□□ -1.19
VPS29YHR012W EPS1P40557 701 aa7.6□□□□□ -1.19
VPS29YHR012W YOR093CQ12275 1648 aa7.6□□□□□ -1.19
VPS29YHR012W BDF1P35817 686 aa7.59□□□□□ -1.19
VPS29YHR012W PDR15Q04182 1529 aaKnown RBP7.57□□□□□ -1.2
VPS29YHR012W SEC7P11075 2009 aaKnown RBP7.56□□□□□ -1.2
VPS29YHR012W IFH1P39520 1085 aa7.56□□□□□ -1.2
VPS29YHR012W VNX1P42839 908 aa7.56□□□□□ -1.2
VPS29YHR012W NSR1P27476 414 aaKnown RBP RIP-Chip data7.55□□□□□ -1.2 RIP-Chip
VPS29YHR012W YAP3P38749 330 aa7.55□□□□□ -1.2
VPS29YHR012W URN1Q06525 465 aaKnown RBP7.55□□□□□ -1.2
VPS29YHR012W CAT8P39113 1433 aa7.53□□□□□ -1.2
VPS29YHR012W SPP1Q03012 353 aa7.52□□□□□ -1.21
VPS29YHR012W CHC1P22137 1653 aaKnown RBP7.5□□□□□ -1.21
VPS29YHR012W ARO1P08566 1588 aaKnown RBP7.5□□□□□ -1.21
VPS29YHR012W CKB1P43639 278 aa7.49□□□□□ -1.21
VPS29YHR012W YJL171CP46992 396 aa7.48□□□□□ -1.21
VPS29YHR012W BNR1P40450 1375 aa7.47□□□□□ -1.21
VPS29YHR012W YAP5P40574 245 aa7.46□□□□□ -1.22
VPS29YHR012W MAK10Q02197 733 aa7.46□□□□□ -1.22
VPS29YHR012W GEA1P47102 1408 aaPredicted RBP7.45□□□□□ -1.22
VPS29YHR012W DNF3Q12674 1656 aa7.45□□□□□ -1.22
VPS29YHR012W AIR2Q12476 344 aaKnown RBP7.42□□□□□ -1.22
VPS29YHR012W YSP2Q06681 1438 aa7.42□□□□□ -1.22
VPS29YHR012W TY3B-GQ99315 1547 aa7.42□□□□□ -1.22
VPS29YHR012W PTP3P40048 928 aa7.41□□□□□ -1.22
VPS29YHR012W OXP1P28273 1286 aa7.4□□□□□ -1.22
VPS29YHR012W YIL055CP40523 627 aaKnown RBP7.4□□□□□ -1.22
VPS29YHR012W WSC3Q12215 556 aa7.4□□□□□ -1.22
VPS29YHR012W TIF11P38912 153 aaKnown RBP7.39□□□□□ -1.23
VPS29YHR012W FKH1P40466 484 aa7.39□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 13 ms