RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W TY1B-JR2P47100 1755 aaKnown RBP9.94□□□□□ -0.82
RPN11YFR004W TY1B-ER2Q03619 1755 aa9.94□□□□□ -0.82
RPN11YFR004W TY1B-MR1Q04214 1755 aa9.94□□□□□ -0.82
RPN11YFR004W TY1B-MR2Q04670 1755 aaKnown RBP9.94□□□□□ -0.82
RPN11YFR004W TY1B-LR1Q12088 1755 aaKnown RBP9.94□□□□□ -0.82
RPN11YFR004W TY1B-NL1Q12112 1755 aa9.94□□□□□ -0.82
RPN11YFR004W TY1B-GR1Q12141 1755 aa9.94□□□□□ -0.82
RPN11YFR004W TY1B-BLQ12490 1755 aa9.94□□□□□ -0.82
RPN11YFR004W NTE1Q04958 1679 aa9.94□□□□□ -0.82
RPN11YFR004W VPS15P22219 1454 aa9.94□□□□□ -0.82
RPN11YFR004W NUP159P40477 1460 aa9.94□□□□□ -0.82
RPN11YFR004W YFR006WP43590 535 aa9.94□□□□□ -0.82
RPN11YFR004W SMC4Q12267 1418 aa9.91□□□□□ -0.82
RPN11YFR004W DRS2P39524 1355 aa9.91□□□□□ -0.82
RPN11YFR004W SPP41P38904 1435 aa9.9□□□□□ -0.83
RPN11YFR004W YOR1P53049 1477 aa9.89□□□□□ -0.83
RPN11YFR004W RPO21P04050 1733 aaKnown RBP9.88□□□□□ -0.83
RPN11YFR004W DNF2Q12675 1612 aa9.86□□□□□ -0.83
RPN11YFR004W VTH1P40438 1549 aa9.84□□□□□ -0.83
RPN11YFR004W VTH2P40890 1549 aa9.84□□□□□ -0.83
RPN11YFR004W TSC11P40061 1430 aa9.83□□□□□ -0.84
RPN11YFR004W STU1P38198 1513 aa9.82□□□□□ -0.84
RPN11YFR004W MYO4P32492 1471 aa9.75□□□□□ -0.85
RPN11YFR004W NUP170P38181 1502 aa9.75□□□□□ -0.85
RPN11YFR004W SPO14P36126 1683 aa9.74□□□□□ -0.85
RPN11YFR004W SNT2P53127 1403 aa9.73□□□□□ -0.85
RPN11YFR004W SNQ2P32568 1501 aaKnown RBP9.69□□□□□ -0.86
RPN11YFR004W TSR3Q12094 313 aaKnown RBP9.68□□□□□ -0.86
RPN11YFR004W ULS1Q08562 1619 aa9.67□□□□□ -0.86
RPN11YFR004W YOR093CQ12275 1648 aa9.67□□□□□ -0.86
RPN11YFR004W DOP1Q03921 1698 aa9.65□□□□□ -0.86
RPN11YFR004W PDR12Q02785 1511 aa9.62□□□□□ -0.87
RPN11YFR004W TRM3Q07527 1436 aa9.58□□□□□ -0.88
RPN11YFR004W RPL17AP05740 184 aaKnown RBP9.58□□□□□ -0.88
RPN11YFR004W MET10P39692 1035 aa9.58□□□□□ -0.88
RPN11YFR004W RPL17BP46990 184 aaKnown RBP9.58□□□□□ -0.88
RPN11YFR004W REB1P21538 810 aa9.55□□□□□ -0.88
RPN11YFR004W GDB1Q06625 1536 aa9.55□□□□□ -0.88
RPN11YFR004W MLP2P40457 1679 aa9.55□□□□□ -0.88
RPN11YFR004W IQG1Q12280 1495 aa9.53□□□□□ -0.88
RPN11YFR004W STH1P32597 1359 aa9.52□□□□□ -0.88
RPN11YFR004W PDR10P51533 1564 aa9.52□□□□□ -0.89
RPN11YFR004W YTA7P40340 1379 aa9.51□□□□□ -0.89
RPN11YFR004W BUD3P25558 1636 aa9.48□□□□□ -0.89
RPN11YFR004W CHC1P22137 1653 aaKnown RBP9.45□□□□□ -0.9
RPN11YFR004W HAA1Q12753 694 aaKnown RBP9.44□□□□□ -0.9
RPN11YFR004W PDR15Q04182 1529 aaKnown RBP9.44□□□□□ -0.9
RPN11YFR004W ARO1P08566 1588 aaKnown RBP9.44□□□□□ -0.9
RPN11YFR004W NUP157P40064 1391 aaKnown RBP9.43□□□□□ -0.9
RPN11YFR004W RTT106P40161 455 aa9.42□□□□□ -0.9
RPN11YFR004W DNF3Q12674 1656 aa9.42□□□□□ -0.9
RPN11YFR004W MRPL32P25348 183 aa9.34□□□□□ -0.91
RPN11YFR004W YCK3P39962 524 aa9.33□□□□□ -0.92
RPN11YFR004W SEC7P11075 2009 aaKnown RBP9.27□□□□□ -0.93
RPN11YFR004W TY3B-GQ99315 1547 aa9.26□□□□□ -0.93
RPN11YFR004W YAP3P38749 330 aa9.2□□□□□ -0.94
RPN11YFR004W YBT1P32386 1661 aa9.2□□□□□ -0.94
RPN11YFR004W CAT8P39113 1433 aa9.19□□□□□ -0.94
RPN11YFR004W USO1P25386 1790 aa9.17□□□□□ -0.94
RPN11YFR004W YSP2Q06681 1438 aa9.14□□□□□ -0.95
RPN11YFR004W MAK10Q02197 733 aa9.14□□□□□ -0.95
RPN11YFR004W BNR1P40450 1375 aa9.12□□□□□ -0.95
RPN11YFR004W TAF7Q05021 590 aa9.11□□□□□ -0.95
RPN11YFR004W GEA1P47102 1408 aaPredicted RBP9.09□□□□□ -0.95
RPN11YFR004W SPT21P35209 758 aa9.09□□□□□ -0.95
RPN11YFR004W SAS10Q12136 610 aaPredicted RBP9.08□□□□□ -0.96
RPN11YFR004W HAP1P0CE41 1502 aa9.06□□□□□ -0.96
RPN11YFR004W IFH1P39520 1085 aa9.05□□□□□ -0.96
RPN11YFR004W TY1B-NL2Q99337 1749 aaKnown RBP9.04□□□□□ -0.96
RPN11YFR004W URN1Q06525 465 aaKnown RBP9.03□□□□□ -0.96
RPN11YFR004W IML1P47170 1584 aa9.03□□□□□ -0.96
RPN11YFR004W NUP188P52593 1655 aaKnown RBP9.01□□□□□ -0.97
RPN11YFR004W DMA1P38823 416 aa9.01□□□□□ -0.97
RPN11YFR004W CKB1P43639 278 aa9□□□□□ -0.97
RPN11YFR004W YMR196WQ04336 1088 aa8.95□□□□□ -0.98
RPN11YFR004W YKR023WP36119 530 aaKnown RBP8.93□□□□□ -0.98
RPN11YFR004W THI12P42883 340 aa8.93□□□□□ -0.98
RPN11YFR004W THI5P43534 340 aa8.93□□□□□ -0.98
RPN11YFR004W THI11P47183 340 aa8.93□□□□□ -0.98
RPN11YFR004W THI13Q07748 340 aa8.93□□□□□ -0.98
RPN11YFR004W VMR1P38735 1592 aa8.92□□□□□ -0.98
RPN11YFR004W RIM101P33400 625 aa8.9□□□□□ -0.98
RPN11YFR004W IPL1P38991 367 aa8.9□□□□□ -0.98
RPN11YFR004W SRB8P25648 1427 aa8.89□□□□□ -0.99
RPN11YFR004W CDC27P38042 758 aa8.86□□□□□ -0.99
RPN11YFR004W YGL015CP33199 130 aa8.83□□□□□ -1
RPN11YFR004W TYS1P36421 394 aaKnown RBP8.82□□□□□ -1
RPN11YFR004W HOP09932 586 aa8.81□□□□□ -1
RPN11YFR004W YAH1Q12184 172 aaKnown RBP8.81□□□□□ -1
RPN11YFR004W GLN1P32288 370 aaKnown RBP8.8□□□□□ -1
RPN11YFR004W TFC8Q12308 588 aa8.77□□□□□ -1.01
RPN11YFR004W DCD1P06773 312 aa8.76□□□□□ -1.01
RPN11YFR004W PDR5P33302 1511 aaKnown RBP8.75□□□□□ -1.01
RPN11YFR004W BUD21Q08492 214 aaPredicted RBP8.75□□□□□ -1.01
RPN11YFR004W YIL055CP40523 627 aaKnown RBP8.71□□□□□ -1.02
RPN11YFR004W PTP3P40048 928 aa8.69□□□□□ -1.02
RPN11YFR004W APP1P53933 587 aa8.68□□□□□ -1.02
RPN11YFR004W BCK1Q01389 1478 aa8.68□□□□□ -1.02
RPN11YFR004W CFT1Q06632 1357 aaKnown RBP8.67□□□□□ -1.02
RPN11YFR004W LEO1P38439 464 aa8.64□□□□□ -1.03
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms