RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W COQ8P27697 501 aa1.97□□□□□ -2.09
CDC39YCR093W NPL4P33755 580 aa1.97□□□□□ -2.09
CDC39YCR093W PAT1P25644 796 aaKnown RBP1.96□□□□□ -2.1
CDC39YCR093W PSE1P32337 1089 aaKnown RBP1.96□□□□□ -2.1
CDC39YCR093W MAP2P38174 421 aaKnown RBP1.96□□□□□ -2.1
CDC39YCR093W ATG3P40344 310 aa1.96□□□□□ -2.1
CDC39YCR093W RPL34AP87262 121 aaPredicted RBP1.96□□□□□ -2.1
CDC39YCR093W PEX29Q03370 554 aa1.96□□□□□ -2.1
CDC39YCR093W COX6P00427 148 aa1.95□□□□□ -2.1
CDC39YCR093W DSF2P38213 736 aa1.95□□□□□ -2.1
CDC39YCR093W UBP14P38237 781 aaKnown RBP1.95□□□□□ -2.1
CDC39YCR093W HPC2Q01448 625 aa1.95□□□□□ -2.1
CDC39YCR093W SCT1P32784 759 aa1.95□□□□□ -2.1
CDC39YCR093W GYP5Q12344 894 aa1.95□□□□□ -2.1
CDC39YCR093W GUT1P32190 709 aa1.95□□□□□ -2.1
CDC39YCR093W IES2P40154 320 aa1.95□□□□□ -2.1
CDC39YCR093W RAM2P29703 316 aa1.94□□□□□ -2.1
CDC39YCR093W RAD54P32863 898 aa1.94□□□□□ -2.1
CDC39YCR093W DBP1P24784 617 aaKnown RBP1.94□□□□□ -2.1
CDC39YCR093W SIS2P36024 562 aa1.94□□□□□ -2.1
CDC39YCR093W SPT5P27692 1063 aaKnown RBP1.94□□□□□ -2.1
CDC39YCR093W SLD2P34252 453 aa1.94□□□□□ -2.1
CDC39YCR093W TEA1P47988 759 aa1.93□□□□□ -2.1
CDC39YCR093W YPP1P46951 817 aa1.93□□□□□ -2.1
CDC39YCR093W TBF1Q02457 562 aa1.93□□□□□ -2.1
CDC39YCR093W YMR196WQ04336 1088 aa1.93□□□□□ -2.1
CDC39YCR093W RPP2BP02400 110 aaKnown RBP1.92□□□□□ -2.1
CDC39YCR093W VHR2P40041 505 aa1.92□□□□□ -2.1
CDC39YCR093W NAP1P25293 417 aaKnown RBP1.92□□□□□ -2.1
CDC39YCR093W RTT106P40161 455 aa1.92□□□□□ -2.1
CDC39YCR093W TFB4Q12004 338 aa1.92□□□□□ -2.1
CDC39YCR093W PTC3P34221 468 aaKnown RBP1.91□□□□□ -2.1
CDC39YCR093W DCW1P36091 449 aa1.91□□□□□ -2.1
CDC39YCR093W CSE4P36012 229 aa1.91□□□□□ -2.1
CDC39YCR093W KEX1P09620 729 aa1.91□□□□□ -2.1
CDC39YCR093W YBR287WP38355 427 aa1.91□□□□□ -2.1
CDC39YCR093W YFR006WP43590 535 aa1.91□□□□□ -2.1
CDC39YCR093W JIP4Q03361 876 aa1.91□□□□□ -2.1
CDC39YCR093W GLN1P32288 370 aaKnown RBP1.9□□□□□ -2.1
CDC39YCR093W LAM6Q08001 693 aa1.9□□□□□ -2.1
CDC39YCR093W CSC1Q06538 782 aa1.9□□□□□ -2.1
CDC39YCR093W VMA1P17255 1071 aaKnown RBP1.9□□□□□ -2.11
CDC39YCR093W SPT2P06843 333 aaPredicted RBP1.9□□□□□ -2.11
CDC39YCR093W GLC3P32775 704 aa1.9□□□□□ -2.11
CDC39YCR093W YFL034WP43564 1073 aa1.9□□□□□ -2.11
CDC39YCR093W SPP1Q03012 353 aa1.9□□□□□ -2.11
CDC39YCR093W TY1B-DR4Q07793 1604 aa1.9□□□□□ -2.11
CDC39YCR093W AI4P03878 556 aa1.9□□□□□ -2.11
CDC39YCR093W YGR273CP53329 174 aa1.9□□□□□ -2.11
CDC39YCR093W MPH3P0CE00 602 aa1.89□□□□□ -2.11
CDC39YCR093W MRF1P30775 413 aaPredicted RBP1.89□□□□□ -2.11
CDC39YCR093W VPS29P38759 282 aa1.89□□□□□ -2.11
CDC39YCR093W KRI1P42846 591 aaKnown RBP1.89□□□□□ -2.11
CDC39YCR093W SPT16P32558 1035 aaKnown RBP1.89□□□□□ -2.11
CDC39YCR093W YBL036CP38197 257 aa1.89□□□□□ -2.11
CDC39YCR093W CSN12P47130 423 aa1.89□□□□□ -2.11
CDC39YCR093W KOG1P38873 1557 aa1.89□□□□□ -2.11
CDC39YCR093W SSA4P22202 642 aaKnown RBP1.89□□□□□ -2.11
CDC39YCR093W PTC4P38089 393 aa1.88□□□□□ -2.11
CDC39YCR093W DMA2P53924 522 aa1.88□□□□□ -2.11
CDC39YCR093W PKH3Q03306 898 aaPredicted RBP1.88□□□□□ -2.11
CDC39YCR093W MMP1Q12372 583 aa1.88□□□□□ -2.11
CDC39YCR093W WSC3Q12215 556 aa1.88□□□□□ -2.11
CDC39YCR093W TIF11P38912 153 aaKnown RBP1.88□□□□□ -2.11
CDC39YCR093W YOL036WQ08206 761 aa1.88□□□□□ -2.11
CDC39YCR093W GYP1Q08484 637 aa1.88□□□□□ -2.11
CDC39YCR093W YNL035CP53962 389 aaKnown RBP1.88□□□□□ -2.11
CDC39YCR093W DNA2P38859 1522 aa1.88□□□□□ -2.11
CDC39YCR093W RPP1AP05318 106 aaPredicted RBP1.87□□□□□ -2.11
CDC39YCR093W RTF1P53064 558 aa1.87□□□□□ -2.11
CDC39YCR093W SAM3Q08986 587 aa1.87□□□□□ -2.11
CDC39YCR093W SWR1Q05471 1514 aa1.87□□□□□ -2.11
CDC39YCR093W RTG1P32607 177 aa1.87□□□□□ -2.11
CDC39YCR093W NOP7P53261 605 aaKnown RBP1.87□□□□□ -2.11
CDC39YCR093W DPL1Q05567 589 aa1.87□□□□□ -2.11
CDC39YCR093W ASF1P32447 279 aa1.87□□□□□ -2.11
CDC39YCR093W SEC61P32915 480 aa1.87□□□□□ -2.11
CDC39YCR093W CWH41P53008 833 aa1.87□□□□□ -2.11
CDC39YCR093W RRN6P32786 894 aa1.86□□□□□ -2.11
CDC39YCR093W ULI1P43604 169 aa1.86□□□□□ -2.11
CDC39YCR093W ELP4Q02884 456 aaKnown RBP1.86□□□□□ -2.11
CDC39YCR093W STE20Q03497 939 aaKnown RBP1.86□□□□□ -2.11
CDC39YCR093W YJL171CP46992 396 aa1.86□□□□□ -2.11
CDC39YCR093W ERG12P07277 443 aa1.86□□□□□ -2.11
CDC39YCR093W YEL023CP39992 682 aa1.86□□□□□ -2.11
CDC39YCR093W PIB1Q06651 286 aa1.86□□□□□ -2.11
CDC39YCR093W ENV9Q08651 330 aa1.86□□□□□ -2.11
CDC39YCR093W ARG8P18544 423 aa1.86□□□□□ -2.11
CDC39YCR093W YNL115CP53925 644 aa1.86□□□□□ -2.11
CDC39YCR093W PTC2P39966 464 aaKnown RBP1.85□□□□□ -2.11
CDC39YCR093W PUS6P53294 404 aa1.85□□□□□ -2.11
CDC39YCR093W ISU2Q12056 156 aa1.85□□□□□ -2.11
CDC39YCR093W TRP5P00931 707 aaKnown RBP1.85□□□□□ -2.11
CDC39YCR093W SIS1P25294 352 aaKnown RBP1.85□□□□□ -2.11
CDC39YCR093W SPT23P35210 1082 aa1.85□□□□□ -2.11
CDC39YCR093W GEF1P37020 779 aa1.85□□□□□ -2.11
CDC39YCR093W ORC1P54784 914 aaPredicted RBP1.85□□□□□ -2.11
CDC39YCR093W TFB3Q03290 321 aa1.85□□□□□ -2.11
CDC39YCR093W SSA1P10591 642 aaKnown RBP1.85□□□□□ -2.11
CDC39YCR093W BUB1P41695 1021 aaKnown RBP RIP-Chip data1.85□□□□□ -2.11not detected
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms