RNA–Protein interactions for RNA: ENST00000636792.1

UPF3B-205, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3B, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-205ENST00000636792 MKRN4PQ13434 485 aaPredicted RBP11.87□□□□□ -0.51
UPF3B-205ENST00000636792 CCDC88BA6NC98 1476 aa11.87□□□□□ -0.51
UPF3B-205ENST00000636792 CFTRP13569 1480 aa11.83□□□□□ -0.52
UPF3B-205ENST00000636792 C19orf67A6NJJ6 358 aa11.83□□□□□ -0.52
UPF3B-205ENST00000636792 CADPSQ9ULU8 1353 aa11.81□□□□□ -0.52
UPF3B-205ENST00000636792 PRR29P0C7W0 189 aa11.75□□□□□ -0.53
UPF3B-205ENST00000636792 PDS5BQ9NTI5 1447 aa11.75□□□□□ -0.53
UPF3B-205ENST00000636792 GABBR2O75899 941 aa11.73□□□□□ -0.53
UPF3B-205ENST00000636792 CHADLQ6NUI6 762 aa11.73□□□□□ -0.53
UPF3B-205ENST00000636792 NESP48681 1621 aa11.71□□□□□ -0.53
UPF3B-205ENST00000636792 KIF21AQ7Z4S6 1674 aa11.7□□□□□ -0.54
UPF3B-205ENST00000636792 CEP164Q9UPV0 1460 aa11.69□□□□□ -0.54
UPF3B-205ENST00000636792 FANCD2Q9BXW9 1451 aa11.68□□□□□ -0.54
UPF3B-205ENST00000636792 ERCC6Q03468 1493 aa11.65□□□□□ -0.54
UPF3B-205ENST00000636792 ABCC8Q09428 1581 aa11.65□□□□□ -0.54
UPF3B-205ENST00000636792 THOC2Q8NI27 1593 aaKnown RBP11.63□□□□□ -0.55
UPF3B-205ENST00000636792 LHX8Q68G74 356 aa11.63□□□□□ -0.55
UPF3B-205ENST00000636792 MRC2Q9UBG0 1479 aa11.62□□□□□ -0.55
UPF3B-205ENST00000636792 WDR62O43379 1518 aa11.6□□□□□ -0.55
UPF3B-205ENST00000636792 DNMBPQ6XZF7 1577 aa11.6□□□□□ -0.55
UPF3B-205ENST00000636792 BIVM-ERCC5R4GMW8 1640 aa11.58□□□□□ -0.56
UPF3B-205ENST00000636792 CD44P16070 742 aaKnown RBP11.57□□□□□ -0.56
UPF3B-205ENST00000636792 TOP2BQ02880 1626 aa11.56□□□□□ -0.56
UPF3B-205ENST00000636792 FARP1Q9Y4F1 1045 aaPredicted RBP11.55□□□□□ -0.56
UPF3B-205ENST00000636792 CUX2O14529 1486 aa11.55□□□□□ -0.56
UPF3B-205ENST00000636792 WRNQ14191 1432 aaPredicted RBP eCLIP11.54□□□□□ -0.56
UPF3B-205ENST00000636792 CLCN6P51797 869 aa11.54□□□□□ -0.56
UPF3B-205ENST00000636792 URB2Q14146 1524 aaKnown RBP11.53□□□□□ -0.56
UPF3B-205ENST00000636792 TOPBP1Q92547 1522 aa11.53□□□□□ -0.56
UPF3B-205ENST00000636792 CUX1P39880 1505 aa11.51□□□□□ -0.57
UPF3B-205ENST00000636792 WDR97A6NE52 1622 aa11.51□□□□□ -0.57
UPF3B-205ENST00000636792 SYNJ1O43426 1573 aa11.49□□□□□ -0.57
UPF3B-205ENST00000636792 POLA1P09884 1462 aaPredicted RBP11.44□□□□□ -0.58
UPF3B-205ENST00000636792 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
UPF3B-205ENST00000636792 FGD5Q6ZNL6 1462 aa11.44□□□□□ -0.58
UPF3B-205ENST00000636792 TARBP1Q13395 1621 aaKnown RBP11.42□□□□□ -0.58
UPF3B-205ENST00000636792 POTEIP0CG38 1075 aa11.42□□□□□ -0.58
UPF3B-205ENST00000636792 DCBLD2Q96PD2 775 aa11.42□□□□□ -0.58
UPF3B-205ENST00000636792 STAG3Q9UJ98 1225 aa11.41□□□□□ -0.58
UPF3B-205ENST00000636792 ABCA10Q8WWZ4 1543 aa11.4□□□□□ -0.59
UPF3B-205ENST00000636792 ZNF579Q8NAF0 562 aaKnown RBP11.37□□□□□ -0.59
UPF3B-205ENST00000636792 ABCA5Q8WWZ7 1642 aa11.36□□□□□ -0.59
UPF3B-205ENST00000636792 ZRANB1Q9UGI0 708 aa11.36□□□□□ -0.59
UPF3B-205ENST00000636792 SOGA1O94964 1423 aa11.35□□□□□ -0.59
UPF3B-205ENST00000636792 EIF4G3O43432 1585 aaKnown RBP11.34□□□□□ -0.59
UPF3B-205ENST00000636792 CSRNP3Q8WYN3 585 aa11.33□□□□□ -0.6
UPF3B-205ENST00000636792 CREBZFQ9NS37 354 aa11.32□□□□□ -0.6
UPF3B-205ENST00000636792 PBRM1Q86U86 1689 aa11.32□□□□□ -0.6
UPF3B-205ENST00000636792 EEA1Q15075 1411 aa11.32□□□□□ -0.6
UPF3B-205ENST00000636792 ERICH3Q5RHP9 1530 aa11.3□□□□□ -0.6
UPF3B-205ENST00000636792 TRIM41Q8WV44 630 aa11.3□□□□□ -0.6
UPF3B-205ENST00000636792 RAD54L2Q9Y4B4 1467 aa11.3□□□□□ -0.6
UPF3B-205ENST00000636792 KIF27Q86VH2 1401 aa11.29□□□□□ -0.6
UPF3B-205ENST00000636792 CUL7Q14999 1698 aa11.29□□□□□ -0.6
UPF3B-205ENST00000636792 PAK3O75914 559 aaPredicted RBP11.28□□□□□ -0.6
UPF3B-205ENST00000636792 GRIN2BQ13224 1484 aa11.27□□□□□ -0.6
UPF3B-205ENST00000636792 GAPVD1Q14C86 1478 aa11.27□□□□□ -0.6
UPF3B-205ENST00000636792 MAGI1Q96QZ7 1491 aaPredicted RBP11.26□□□□□ -0.61
UPF3B-205ENST00000636792 ZNF608Q9ULD9 1512 aaPredicted RBP11.25□□□□□ -0.61
UPF3B-205ENST00000636792 SPDYE4A6NLX3 237 aa11.24□□□□□ -0.61
UPF3B-205ENST00000636792 ADAMTS12P58397 1594 aa11.22□□□□□ -0.61
UPF3B-205ENST00000636792 GALR2O43603 387 aaPredicted RBP11.21□□□□□ -0.61
UPF3B-205ENST00000636792 TDRD9Q8NDG6 1382 aaKnown RBP11.2□□□□□ -0.62
UPF3B-205ENST00000636792 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
UPF3B-205ENST00000636792 AQRO60306 1485 aaKnown RBP eCLIP11.19□□□□□ -0.621e-9■□□□□ 10.7
UPF3B-205ENST00000636792 SYNJ2O15056 1496 aa11.18□□□□□ -0.62
UPF3B-205ENST00000636792 SNAPC4Q5SXM2 1469 aa11.18□□□□□ -0.62
UPF3B-205ENST00000636792 FHAD1B1AJZ9 1412 aa11.18□□□□□ -0.62
UPF3B-205ENST00000636792 KIF21BO75037 1637 aa11.17□□□□□ -0.62
UPF3B-205ENST00000636792 CHD1O14646 1710 aa11.15□□□□□ -0.62
UPF3B-205ENST00000636792 PLSCR2Q9NRY7 297 aa11.15□□□□□ -0.62
UPF3B-205ENST00000636792 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
UPF3B-205ENST00000636792 IGF1RP08069 1367 aa11.14□□□□□ -0.63
UPF3B-205ENST00000636792 PRXQ9BXM0 1461 aa11.13□□□□□ -0.63
UPF3B-205ENST00000636792 RUSC2Q8N2Y8 1516 aa11.12□□□□□ -0.63
UPF3B-205ENST00000636792 GRIN2AQ12879 1464 aa11.12□□□□□ -0.63
UPF3B-205ENST00000636792 RAPGEF2Q9Y4G8 1499 aa11.12□□□□□ -0.63
UPF3B-205ENST00000636792 CARMIL1Q5VZK9 1371 aa11.1□□□□□ -0.63
UPF3B-205ENST00000636792 CTTNBP2Q8WZ74 1663 aa11.1□□□□□ -0.63
UPF3B-205ENST00000636792 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
UPF3B-205ENST00000636792 NUP160Q12769 1436 aa11.08□□□□□ -0.64
UPF3B-205ENST00000636792 GOLGA3Q08378 1498 aa11.07□□□□□ -0.64
UPF3B-205ENST00000636792 EHMT2Q96KQ7 1210 aa11.07□□□□□ -0.64
UPF3B-205ENST00000636792 MNX1P50219 401 aaPredicted RBP11.05□□□□□ -0.64
UPF3B-205ENST00000636792 CLASP1Q7Z460 1538 aa11.04□□□□□ -0.64
UPF3B-205ENST00000636792 CEP170Q5SW79 1584 aa11.04□□□□□ -0.64
UPF3B-205ENST00000636792 POTEB2H3BUK9 544 aa11.03□□□□□ -0.64
UPF3B-205ENST00000636792 CHMP7Q8WUX9 453 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-205ENST00000636792 KIAA0586Q9BVV6 1533 aa11.02□□□□□ -0.65
UPF3B-205ENST00000636792 IQGAP2Q13576 1575 aa11.02□□□□□ -0.65
UPF3B-205ENST00000636792 SHROOM2Q13796 1616 aa11.02□□□□□ -0.65
UPF3B-205ENST00000636792 PELP1Q8IZL8 1130 aaKnown RBP10.99□□□□□ -0.65
UPF3B-205ENST00000636792 MS4A3Q96HJ5 214 aa10.99□□□□□ -0.65
UPF3B-205ENST00000636792 C7P10643 843 aa10.98□□□□□ -0.65
UPF3B-205ENST00000636792 ASTLQ6HA08 431 aaPredicted RBP10.98□□□□□ -0.65
UPF3B-205ENST00000636792 SLC39A7Q92504 469 aa10.98□□□□□ -0.65
UPF3B-205ENST00000636792 METRNQ9UJH8 293 aa10.98□□□□□ -0.65
UPF3B-205ENST00000636792 UGGT2Q9NYU1 1516 aa10.97□□□□□ -0.65
UPF3B-205ENST00000636792 EFCAB5A4FU69 1503 aa10.96□□□□□ -0.65
UPF3B-205ENST00000636792 POTEMA6NI47 508 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms