RNA–Protein interactions for RNA: ENST00000636792.1

UPF3B-205, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3B, Length 834 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-205ENST00000636792 AEBP2Q6ZN18 517 aaPredicted RBP22.52■■□□□ 1.2
UPF3B-205ENST00000636792 CHIC1Q5VXU3 224 aa21.18■□□□□ 0.98
UPF3B-205ENST00000636792 SENP3Q9H4L4 574 aaPredicted RBP19.38■□□□□ 0.69
UPF3B-205ENST00000636792 PHF23Q9BUL5 403 aaPredicted RBP19.04■□□□□ 0.64
UPF3B-205ENST00000636792 FOXD1Q16676 465 aa18.02■□□□□ 0.48
UPF3B-205ENST00000636792 POTEDQ86YR6 584 aa17.09■□□□□ 0.33
UPF3B-205ENST00000636792 MSH5O43196 834 aa17.07■□□□□ 0.32
UPF3B-205ENST00000636792 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.28
UPF3B-205ENST00000636792 PIAS4Q8N2W9 510 aaPredicted RBP16.82■□□□□ 0.28
UPF3B-205ENST00000636792 PPP6R1Q9UPN7 881 aa16.58■□□□□ 0.24
UPF3B-205ENST00000636792 ADRA2BP18089 450 aa16.54■□□□□ 0.24
UPF3B-205ENST00000636792 NISCHQ9Y2I1 1504 aa15.99■□□□□ 0.15
UPF3B-205ENST00000636792 DMRT2Q9Y5R5 561 aa15.29■□□□□ 0.04
UPF3B-205ENST00000636792 SCAF1Q9H7N4 1312 aaKnown RBP15.27■□□□□ 0.04
UPF3B-205ENST00000636792 MAPK8IP2Q13387 824 aaPredicted RBP15.27■□□□□ 0.04
UPF3B-205ENST00000636792 CACNB1Q02641 598 aaPredicted RBP14.83□□□□□ -0.04
UPF3B-205ENST00000636792 DCAF8L1A6NGE4 600 aa14.73□□□□□ -0.05
UPF3B-205ENST00000636792 PPP4R3CPQ6ZMV5 832 aa14.68□□□□□ -0.06
UPF3B-205ENST00000636792 HOXD11P31277 338 aaPredicted RBP14.6□□□□□ -0.07
UPF3B-205ENST00000636792 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
UPF3B-205ENST00000636792 RNF39Q9H2S5 420 aa14.48□□□□□ -0.09
UPF3B-205ENST00000636792 RNF216Q9NWF9 866 aaPredicted RBP14.43□□□□□ -0.1
UPF3B-205ENST00000636792 C1QBPQ07021 282 aaKnown RBP14.31□□□□□ -0.12
UPF3B-205ENST00000636792 CCDC180Q9P1Z9 1646 aa14.27□□□□□ -0.12
UPF3B-205ENST00000636792 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
UPF3B-205ENST00000636792 NCBP3Q53F19 620 aaKnown RBP14.11□□□□□ -0.15
UPF3B-205ENST00000636792 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.98□□□□□ -0.17
UPF3B-205ENST00000636792 NPM3O75607 178 aaKnown RBP13.8□□□□□ -0.2
UPF3B-205ENST00000636792 U3KPZ7 1027 aaPredicted RBP13.56□□□□□ -0.24
UPF3B-205ENST00000636792 CAPN15O75808 1086 aa13.52□□□□□ -0.25
UPF3B-205ENST00000636792 ABCC9O60706 1549 aa13.46□□□□□ -0.25
UPF3B-205ENST00000636792 DSG3P32926 999 aa13.46□□□□□ -0.25
UPF3B-205ENST00000636792 SPINK5Q9NQ38 1064 aaPredicted RBP13.45□□□□□ -0.26
UPF3B-205ENST00000636792 ZCCHC6Q5VYS8 1495 aaKnown RBP13.41□□□□□ -0.26
UPF3B-205ENST00000636792 MYO15BQ96JP2 1530 aa13.38□□□□□ -0.27
UPF3B-205ENST00000636792 POTEHQ6S545 545 aa13.37□□□□□ -0.27
UPF3B-205ENST00000636792 DCAF1Q9Y4B6 1507 aa13.37□□□□□ -0.27
UPF3B-205ENST00000636792 APLP2Q06481 763 aa13.32□□□□□ -0.28
UPF3B-205ENST00000636792 NACADO15069 1562 aa13.29□□□□□ -0.28
UPF3B-205ENST00000636792 KCNA4P22459 653 aa13.25□□□□□ -0.29
UPF3B-205ENST00000636792 RB1CC1Q8TDY2 1594 aa13.24□□□□□ -0.29
UPF3B-205ENST00000636792 SLC4A2P04920 1241 aa13.22□□□□□ -0.29
UPF3B-205ENST00000636792 TRHP20396 242 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-205ENST00000636792 ZNF219Q9P2Y4 722 aaPredicted RBP13.22□□□□□ -0.29
UPF3B-205ENST00000636792 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.2□□□□□ -0.3
UPF3B-205ENST00000636792 HNRNPUL2Q1KMD3 747 aaKnown RBP13.2□□□□□ -0.3
UPF3B-205ENST00000636792 ABCB7O75027 752 aa13.14□□□□□ -0.31
UPF3B-205ENST00000636792 SAMD1Q6SPF0 538 aaPredicted RBP13.09□□□□□ -0.31
UPF3B-205ENST00000636792 DCAF8L2P0C7V8 631 aa12.98□□□□□ -0.33
UPF3B-205ENST00000636792 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
UPF3B-205ENST00000636792 UNC13AQ9UPW8 1703 aa12.93□□□□□ -0.34
UPF3B-205ENST00000636792 SHROOM4Q9ULL8 1493 aa12.86□□□□□ -0.35
UPF3B-205ENST00000636792 SCRIBQ14160 1630 aa12.84□□□□□ -0.35
UPF3B-205ENST00000636792 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
UPF3B-205ENST00000636792 POLA2Q14181 598 aa12.77□□□□□ -0.37
UPF3B-205ENST00000636792 BICRAQ9NZM4 1560 aa12.76□□□□□ -0.37
UPF3B-205ENST00000636792 CHRDL2Q6WN34 429 aa12.72□□□□□ -0.37
UPF3B-205ENST00000636792 ZBTB12Q9Y330 459 aaPredicted RBP12.59□□□□□ -0.39
UPF3B-205ENST00000636792 AKT1S1Q96B36 256 aa12.55□□□□□ -0.4
UPF3B-205ENST00000636792 FOXD4L1Q9NU39 408 aa12.52□□□□□ -0.41
UPF3B-205ENST00000636792 SLC4A1APQ9BWU0 796 aaKnown RBP12.51□□□□□ -0.41
UPF3B-205ENST00000636792 PABPN1Q86U42 306 aaKnown RBP eCLIP12.5□□□□□ -0.41
UPF3B-205ENST00000636792 ATF5Q9Y2D1 282 aaPredicted RBP12.45□□□□□ -0.42
UPF3B-205ENST00000636792 BAZ1AQ9NRL2 1556 aaPredicted RBP12.43□□□□□ -0.42
UPF3B-205ENST00000636792 EIF4G1Q04637 1599 aaKnown RBP12.42□□□□□ -0.42
UPF3B-205ENST00000636792 SP7Q8TDD2 431 aaPredicted RBP12.4□□□□□ -0.42
UPF3B-205ENST00000636792 REM2Q8IYK8 340 aaPredicted RBP12.39□□□□□ -0.43
UPF3B-205ENST00000636792 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
UPF3B-205ENST00000636792 OSCARQ8IYS5 282 aa12.37□□□□□ -0.43
UPF3B-205ENST00000636792 PEG3Q9GZU2 1588 aa12.34□□□□□ -0.43
UPF3B-205ENST00000636792 PIP4P2Q8N4L2 257 aa12.33□□□□□ -0.44
UPF3B-205ENST00000636792 CECR2Q9BXF3 1484 aa12.32□□□□□ -0.44
UPF3B-205ENST00000636792 SMARCA2P51531 1590 aa12.3□□□□□ -0.44
UPF3B-205ENST00000636792 CC2D2AQ9P2K1 1620 aa12.28□□□□□ -0.44
UPF3B-205ENST00000636792 MROH2BQ7Z745 1585 aa12.26□□□□□ -0.45
UPF3B-205ENST00000636792 PITPNM1O00562 1244 aa12.25□□□□□ -0.45
UPF3B-205ENST00000636792 HMGXB3Q12766 1538 aa12.25□□□□□ -0.45
UPF3B-205ENST00000636792 HAX1O00165 279 aa12.23□□□□□ -0.45
UPF3B-205ENST00000636792 RSF1Q96T23 1441 aaPredicted RBP12.21□□□□□ -0.45
UPF3B-205ENST00000636792 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.45
UPF3B-205ENST00000636792 NCAPD3P42695 1498 aa12.21□□□□□ -0.46
UPF3B-205ENST00000636792 ATAD2BQ9ULI0 1458 aa12.2□□□□□ -0.46
UPF3B-205ENST00000636792 ATXN8OSP0DMR3 200 aa12.19□□□□□ -0.46
UPF3B-205ENST00000636792 WIZO95785 1651 aa12.16□□□□□ -0.46
UPF3B-205ENST00000636792 ZBTB22O15209 634 aa12.14□□□□□ -0.47
UPF3B-205ENST00000636792 BAZ1BQ9UIG0 1483 aaKnown RBP12.14□□□□□ -0.47
UPF3B-205ENST00000636792 SPDYE2BA6NHP3 402 aa12.13□□□□□ -0.47
UPF3B-205ENST00000636792 SPDYE6P0CI01 402 aa12.13□□□□□ -0.47
UPF3B-205ENST00000636792 FBLN2P98095 1184 aa12.13□□□□□ -0.47
UPF3B-205ENST00000636792 SPDYE2Q495Y8 402 aa12.13□□□□□ -0.47
UPF3B-205ENST00000636792 TOP2AP11388 1531 aaKnown RBP12.12□□□□□ -0.47
UPF3B-205ENST00000636792 SPDYE1Q8NFV5 336 aaPredicted RBP12□□□□□ -0.49
UPF3B-205ENST00000636792 CLEC11AQ9Y240 323 aa11.98□□□□□ -0.49
UPF3B-205ENST00000636792 PRKAR2AP13861 404 aaKnown RBP11.96□□□□□ -0.49
UPF3B-205ENST00000636792 EVX2Q03828 476 aa11.94□□□□□ -0.5
UPF3B-205ENST00000636792 ZNF692Q9BU19 519 aaPredicted RBP11.93□□□□□ -0.5
UPF3B-205ENST00000636792 PRDM2Q13029 1718 aa11.92□□□□□ -0.5
UPF3B-205ENST00000636792 LAMC3Q9Y6N6 1575 aa11.91□□□□□ -0.5
UPF3B-205ENST00000636792 SUPT5HO00267 1087 aaKnown RBP11.89□□□□□ -0.51
UPF3B-205ENST00000636792 SSUH2Q9Y2M2 353 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms