RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 DDX10Q13206 875 aaKnown RBP20.07■□□□□ 0.8
LDB3-209ENST00000623056 RBM19Q9Y4C8 960 aaKnown RBP20.06■□□□□ 0.8
LDB3-209ENST00000623056 NESP48681 1621 aa20.06■□□□□ 0.8
LDB3-209ENST00000623056 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
LDB3-209ENST00000623056 NEFLP07196 543 aa20.03■□□□□ 0.8
LDB3-209ENST00000623056 ARHGAP35Q9NRY4 1499 aa20.02■□□□□ 0.8
LDB3-209ENST00000623056 PPP1R15AO75807 674 aaPredicted RBP20■□□□□ 0.79
LDB3-209ENST00000623056 FANCD2Q9BXW9 1451 aa19.99■□□□□ 0.79
LDB3-209ENST00000623056 SETD5Q9C0A6 1442 aa19.98■□□□□ 0.79
LDB3-209ENST00000623056 KIF27Q86VH2 1401 aa19.96■□□□□ 0.79
LDB3-209ENST00000623056 CCER2I3L3R5 266 aa19.94■□□□□ 0.78
LDB3-209ENST00000623056 SIN3AQ96ST3 1273 aa19.94■□□□□ 0.78
LDB3-209ENST00000623056 TRIM52Q96A61 297 aa19.93■□□□□ 0.78
LDB3-209ENST00000623056 TIAM1Q13009 1591 aa19.91■□□□□ 0.78
LDB3-209ENST00000623056 FGD5Q6ZNL6 1462 aa19.9■□□□□ 0.78
LDB3-209ENST00000623056 MAP3K1Q13233 1512 aa19.89■□□□□ 0.77
LDB3-209ENST00000623056 ANP32CO43423 234 aa19.88■□□□□ 0.77
LDB3-209ENST00000623056 TIMELESSQ9UNS1 1208 aa19.87■□□□□ 0.77
LDB3-209ENST00000623056 LAMC3Q9Y6N6 1575 aa19.86■□□□□ 0.77
LDB3-209ENST00000623056 MSH5O43196 834 aa19.86■□□□□ 0.77
LDB3-209ENST00000623056 HIRIP3Q9BW71 556 aaPredicted RBP19.86■□□□□ 0.77
LDB3-209ENST00000623056 PHLDB1Q86UU1 1377 aa19.84■□□□□ 0.77
LDB3-209ENST00000623056 LRRC9Q6ZRR7 1453 aa19.83■□□□□ 0.77
LDB3-209ENST00000623056 FAM50AQ14320 339 aaKnown RBP19.81■□□□□ 0.76
LDB3-209ENST00000623056 DNMBPQ6XZF7 1577 aa19.8■□□□□ 0.76
LDB3-209ENST00000623056 TOPBP1Q92547 1522 aa19.8■□□□□ 0.76
LDB3-209ENST00000623056 RAD54L2Q9Y4B4 1467 aa19.77■□□□□ 0.75
LDB3-209ENST00000623056 FANCIQ9NVI1 1328 aa19.76■□□□□ 0.75
LDB3-209ENST00000623056 POLA1P09884 1462 aaPredicted RBP19.75■□□□□ 0.75
LDB3-209ENST00000623056 URB2Q14146 1524 aaKnown RBP19.75■□□□□ 0.75
LDB3-209ENST00000623056 PDS5BQ9NTI5 1447 aa19.74■□□□□ 0.75
LDB3-209ENST00000623056 IGF1RP08069 1367 aa19.72■□□□□ 0.75
LDB3-209ENST00000623056 KIF21AQ7Z4S6 1674 aa19.72■□□□□ 0.75
LDB3-209ENST00000623056 CFAP43Q8NDM7 1665 aa19.72■□□□□ 0.75
LDB3-209ENST00000623056 CDK11AQ9UQ88 783 aaPredicted RBP19.69■□□□□ 0.74
LDB3-209ENST00000623056 FHAD1B1AJZ9 1412 aa19.67■□□□□ 0.74
LDB3-209ENST00000623056 TONSLQ96HA7 1378 aa19.66■□□□□ 0.74
LDB3-209ENST00000623056 PCF11O94913 1555 aaKnown RBP19.66■□□□□ 0.74
LDB3-209ENST00000623056 IRX6P78412 446 aaPredicted RBP19.65■□□□□ 0.74
LDB3-209ENST00000623056 HNRNPUQ00839 825 aaKnown RBP eCLIP19.65■□□□□ 0.74
LDB3-209ENST00000623056 ERICH6Q7L0X2 663 aa19.65■□□□□ 0.74
LDB3-209ENST00000623056 ABCA10Q8WWZ4 1543 aa19.64■□□□□ 0.73
LDB3-209ENST00000623056 CARMIL1Q5VZK9 1371 aa19.62■□□□□ 0.73
LDB3-209ENST00000623056 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.62■□□□□ 0.73
LDB3-209ENST00000623056 ATP1B4Q9UN42 357 aaPredicted RBP19.57■□□□□ 0.72
LDB3-209ENST00000623056 CCDC18Q5T9S5 1454 aa19.56■□□□□ 0.72
LDB3-209ENST00000623056 ERICH6BQ5W0A0 696 aa19.56■□□□□ 0.72
LDB3-209ENST00000623056 P3H3Q8IVL6 736 aa19.56■□□□□ 0.72
LDB3-209ENST00000623056 TDRD9Q8NDG6 1382 aaKnown RBP19.56■□□□□ 0.72
LDB3-209ENST00000623056 UACAQ9BZF9 1416 aa19.54■□□□□ 0.72
LDB3-209ENST00000623056 FYCO1Q9BQS8 1478 aa19.53■□□□□ 0.72
LDB3-209ENST00000623056 PPP4R2Q9NY27 417 aa19.53■□□□□ 0.72
LDB3-209ENST00000623056 KDM5BQ9UGL1 1544 aa19.51■□□□□ 0.71
LDB3-209ENST00000623056 FHOD3Q2V2M9 1422 aa19.51■□□□□ 0.71
LDB3-209ENST00000623056 FGD6Q6ZV73 1430 aa19.51■□□□□ 0.71
LDB3-209ENST00000623056 MYT1LQ9UL68 1186 aa19.5■□□□□ 0.71
LDB3-209ENST00000623056 HFM1A2PYH4 1435 aa19.5■□□□□ 0.71
LDB3-209ENST00000623056 ERCC6Q03468 1493 aa19.49■□□□□ 0.71
LDB3-209ENST00000623056 CASKIN1Q8WXD9 1431 aa19.49■□□□□ 0.71
LDB3-209ENST00000623056 MRC2Q9UBG0 1479 aa19.49■□□□□ 0.71
LDB3-209ENST00000623056 PTPN23Q9H3S7 1636 aa19.49■□□□□ 0.71
LDB3-209ENST00000623056 PTPRKQ15262 1439 aa19.47■□□□□ 0.71
LDB3-209ENST00000623056 WASHC2AQ641Q2 1341 aa19.47■□□□□ 0.71
LDB3-209ENST00000623056 ABCA5Q8WWZ7 1642 aa19.47■□□□□ 0.71
LDB3-209ENST00000623056 AQRO60306 1485 aaKnown RBP eCLIP19.46■□□□□ 0.71
LDB3-209ENST00000623056 GAPVD1Q14C86 1478 aa19.45■□□□□ 0.7
LDB3-209ENST00000623056 TARBP1Q13395 1621 aaKnown RBP19.45■□□□□ 0.7
LDB3-209ENST00000623056 EFCAB5A4FU69 1503 aa19.44■□□□□ 0.7
LDB3-209ENST00000623056 CUL7Q14999 1698 aa19.43■□□□□ 0.7
LDB3-209ENST00000623056 HSPA5P11021 654 aaKnown RBP19.43■□□□□ 0.7
LDB3-209ENST00000623056 DEKP35659 375 aaKnown RBP19.42■□□□□ 0.7
LDB3-209ENST00000623056 NAIPQ13075 1403 aa19.42■□□□□ 0.7
LDB3-209ENST00000623056 CCDC184Q52MB2 194 aa19.42■□□□□ 0.7
LDB3-209ENST00000623056 NCOA2Q15596 1464 aa19.42■□□□□ 0.7
LDB3-209ENST00000623056 B4GALNT3Q6L9W6 998 aa19.4■□□□□ 0.7
LDB3-209ENST00000623056 CNTLNQ9NXG0 1405 aa19.4■□□□□ 0.7
LDB3-209ENST00000623056 MTUS2Q5JR59 1369 aa19.36■□□□□ 0.69
LDB3-209ENST00000623056 WDR62O43379 1518 aa19.35■□□□□ 0.69
LDB3-209ENST00000623056 FMN1Q68DA7 1419 aa19.35■□□□□ 0.69
LDB3-209ENST00000623056 ZBED9Q6R2W3 1325 aa19.35■□□□□ 0.69
LDB3-209ENST00000623056 EIF4G2P78344 907 aaKnown RBP eCLIP19.34■□□□□ 0.69
LDB3-209ENST00000623056 DNAJC5Q9H3Z4 198 aa19.34■□□□□ 0.69
LDB3-209ENST00000623056 FAM9BQ8IZU0 186 aa19.34■□□□□ 0.69
LDB3-209ENST00000623056 NOP58Q9Y2X3 529 aaKnown RBP19.34■□□□□ 0.69
LDB3-209ENST00000623056 SNAPC4Q5SXM2 1469 aa19.34■□□□□ 0.69
LDB3-209ENST00000623056 PRKRIP1Q9H875 184 aaPredicted RBP19.33■□□□□ 0.68
LDB3-209ENST00000623056 ZNF608Q9ULD9 1512 aaPredicted RBP19.32■□□□□ 0.68
LDB3-209ENST00000623056 MYOM3Q5VTT5 1437 aa19.31■□□□□ 0.68
LDB3-209ENST00000623056 MRS2Q9HD23 443 aa19.3■□□□□ 0.68
LDB3-209ENST00000623056 CTTNBP2Q8WZ74 1663 aa19.3■□□□□ 0.68
LDB3-209ENST00000623056 PBRM1Q86U86 1689 aa19.29■□□□□ 0.68
LDB3-209ENST00000623056 DENND4BO75064 1496 aaPredicted RBP19.28■□□□□ 0.68
LDB3-209ENST00000623056 NCOA1Q15788 1441 aa19.28■□□□□ 0.68
LDB3-209ENST00000623056 CCDC7Q96M83 1385 aa19.28■□□□□ 0.68
LDB3-209ENST00000623056 C11orf95C9JLR9 678 aaPredicted RBP19.28■□□□□ 0.68
LDB3-209ENST00000623056 PAK3O75914 559 aaPredicted RBP19.28■□□□□ 0.68
LDB3-209ENST00000623056 IFT140Q96RY7 1462 aa19.27■□□□□ 0.68
LDB3-209ENST00000623056 HECW1Q76N89 1606 aa19.26■□□□□ 0.67
LDB3-209ENST00000623056 THOC2Q8NI27 1593 aaKnown RBP19.26■□□□□ 0.67
LDB3-209ENST00000623056 LRRIQ1Q96JM4 1722 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms