RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 TOPBP1Q92547 1522 aa14.97□□□□□ -0.01
VPS11-207ENST00000620429 TNIKQ9UKE5 1360 aa14.96□□□□□ -0.01
VPS11-207ENST00000620429 ERICH6BQ5W0A0 696 aa14.95□□□□□ -0.02
VPS11-207ENST00000620429 EIF4G3O43432 1585 aaKnown RBP14.93□□□□□ -0.02
VPS11-207ENST00000620429 GOLGA3Q08378 1498 aa14.92□□□□□ -0.02
VPS11-207ENST00000620429 TARBP1Q13395 1621 aaKnown RBP14.91□□□□□ -0.02
VPS11-207ENST00000620429 MSH5O43196 834 aa14.91□□□□□ -0.02
VPS11-207ENST00000620429 ARHGEF11O15085 1522 aa14.91□□□□□ -0.02
VPS11-207ENST00000620429 TOP2BQ02880 1626 aa14.89□□□□□ -0.03
VPS11-207ENST00000620429 ZNF608Q9ULD9 1512 aaPredicted RBP14.86□□□□□ -0.03
VPS11-207ENST00000620429 CHD1O14646 1710 aa14.85□□□□□ -0.03
VPS11-207ENST00000620429 RANGAP1P46060 587 aaPredicted RBP14.85□□□□□ -0.03
VPS11-207ENST00000620429 FANCIQ9NVI1 1328 aa14.85□□□□□ -0.03
VPS11-207ENST00000620429 DEKP35659 375 aaKnown RBP14.85□□□□□ -0.03
VPS11-207ENST00000620429 CUX1P39880 1505 aa14.85□□□□□ -0.03
VPS11-207ENST00000620429 RAPGEF2Q9Y4G8 1499 aa14.84□□□□□ -0.03
VPS11-207ENST00000620429 SALL2Q9Y467 1007 aaPredicted RBP14.84□□□□□ -0.03
VPS11-207ENST00000620429 HNRNPUL2Q1KMD3 747 aaKnown RBP14.83□□□□□ -0.04
VPS11-207ENST00000620429 BIVM-ERCC5R4GMW8 1640 aa14.83□□□□□ -0.04
VPS11-207ENST00000620429 KIF21BO75037 1637 aa14.82□□□□□ -0.04
VPS11-207ENST00000620429 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
VPS11-207ENST00000620429 MAGI1Q96QZ7 1491 aaPredicted RBP14.76□□□□□ -0.05
VPS11-207ENST00000620429 CLIP1P30622 1438 aa14.76□□□□□ -0.05
VPS11-207ENST00000620429 CLASP1Q7Z460 1538 aa14.75□□□□□ -0.05
VPS11-207ENST00000620429 SLC24A1O60721 1099 aa14.74□□□□□ -0.05
VPS11-207ENST00000620429 EIF5BO60841 1220 aaKnown RBP14.73□□□□□ -0.05
VPS11-207ENST00000620429 ARAP1Q96P48 1450 aa14.72□□□□□ -0.05
VPS11-207ENST00000620429 BCANQ96GW7 911 aa14.7□□□□□ -0.06
VPS11-207ENST00000620429 PRXQ9BXM0 1461 aa14.7□□□□□ -0.06
VPS11-207ENST00000620429 FKBP8Q14318 412 aa14.68□□□□□ -0.06
VPS11-207ENST00000620429 KIF27Q86VH2 1401 aa14.68□□□□□ -0.06
VPS11-207ENST00000620429 AQRO60306 1485 aaKnown RBP eCLIP14.68□□□□□ -0.066e-11■■■■□ 25.1
VPS11-207ENST00000620429 GRIN2BQ13224 1484 aa14.68□□□□□ -0.06
VPS11-207ENST00000620429 CCDC136Q96JN2 1154 aa14.67□□□□□ -0.06
VPS11-207ENST00000620429 SYNJ2O15056 1496 aa14.65□□□□□ -0.06
VPS11-207ENST00000620429 VPS8Q8N3P4 1428 aa14.65□□□□□ -0.06
VPS11-207ENST00000620429 PBRM1Q86U86 1689 aa14.64□□□□□ -0.07
VPS11-207ENST00000620429 FGD5Q6ZNL6 1462 aa14.64□□□□□ -0.07
VPS11-207ENST00000620429 SNAPC4Q5SXM2 1469 aa14.63□□□□□ -0.07
VPS11-207ENST00000620429 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
VPS11-207ENST00000620429 ABCA5Q8WWZ7 1642 aa14.6□□□□□ -0.07
VPS11-207ENST00000620429 RAD54L2Q9Y4B4 1467 aa14.59□□□□□ -0.07
VPS11-207ENST00000620429 ABCA10Q8WWZ4 1543 aa14.59□□□□□ -0.07
VPS11-207ENST00000620429 IGF1RP08069 1367 aa14.59□□□□□ -0.07
VPS11-207ENST00000620429 CYB5RLQ6IPT4 315 aa14.58□□□□□ -0.08
VPS11-207ENST00000620429 NEFLP07196 543 aa14.57□□□□□ -0.08
VPS11-207ENST00000620429 PKNOX2Q96KN3 472 aa14.57□□□□□ -0.08
VPS11-207ENST00000620429 DAXXQ9UER7 740 aaPredicted RBP14.57□□□□□ -0.08
VPS11-207ENST00000620429 GAPVD1Q14C86 1478 aa14.54□□□□□ -0.08
VPS11-207ENST00000620429 TDRD9Q8NDG6 1382 aaKnown RBP14.53□□□□□ -0.08
VPS11-207ENST00000620429 CHMP7Q8WUX9 453 aaPredicted RBP14.52□□□□□ -0.09
VPS11-207ENST00000620429 CARMIL1Q5VZK9 1371 aa14.5□□□□□ -0.09
VPS11-207ENST00000620429 DHX57Q6P158 1386 aaKnown RBP14.5□□□□□ -0.09
VPS11-207ENST00000620429 KANK4Q5T7N3 995 aaPredicted RBP14.5□□□□□ -0.09
VPS11-207ENST00000620429 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.5□□□□□ -0.09
VPS11-207ENST00000620429 SHROOM2Q13796 1616 aa14.5□□□□□ -0.09
VPS11-207ENST00000620429 ITGAEP38570 1179 aa14.5□□□□□ -0.09
VPS11-207ENST00000620429 ARHGAP35Q9NRY4 1499 aa14.49□□□□□ -0.09
VPS11-207ENST00000620429 IL27Q8NEV9 243 aa14.48□□□□□ -0.09
VPS11-207ENST00000620429 FBLN2P98095 1184 aa14.48□□□□□ -0.09
VPS11-207ENST00000620429 CDK11AQ9UQ88 783 aaPredicted RBP14.48□□□□□ -0.09
VPS11-207ENST00000620429 ADAMTS12P58397 1594 aa14.47□□□□□ -0.09
VPS11-207ENST00000620429 NUP160Q12769 1436 aa14.46□□□□□ -0.09
VPS11-207ENST00000620429 TRHP20396 242 aaPredicted RBP14.46□□□□□ -0.09
VPS11-207ENST00000620429 GRIN2AQ12879 1464 aa14.45□□□□□ -0.1
VPS11-207ENST00000620429 NOP58Q9Y2X3 529 aaKnown RBP14.42□□□□□ -0.1
VPS11-207ENST00000620429 FHAD1B1AJZ9 1412 aa14.41□□□□□ -0.1
VPS11-207ENST00000620429 P3H3Q8IVL6 736 aa14.41□□□□□ -0.1
VPS11-207ENST00000620429 CEP170Q5SW79 1584 aa14.39□□□□□ -0.11
VPS11-207ENST00000620429 KCNH8Q96L42 1107 aa14.39□□□□□ -0.11
VPS11-207ENST00000620429 NBR1Q14596 966 aa14.37□□□□□ -0.11
VPS11-207ENST00000620429 RTN4Q9NQC3 1192 aaKnown RBP14.37□□□□□ -0.11
VPS11-207ENST00000620429 C11orf95C9JLR9 678 aaPredicted RBP14.35□□□□□ -0.11
VPS11-207ENST00000620429 RTL5Q5HYW3 569 aaPredicted RBP14.34□□□□□ -0.11
VPS11-207ENST00000620429 PODXL2Q9NZ53 605 aa14.33□□□□□ -0.12
VPS11-207ENST00000620429 PLEKHG5O94827 1062 aa14.32□□□□□ -0.12
VPS11-207ENST00000620429 ATP1B4Q9UN42 357 aaPredicted RBP14.31□□□□□ -0.12
VPS11-207ENST00000620429 RRBP1Q9P2E9 1410 aaKnown RBP14.31□□□□□ -0.12
VPS11-207ENST00000620429 KIF13AQ9H1H9 1805 aa14.31□□□□□ -0.12
VPS11-207ENST00000620429 FHOD3Q2V2M9 1422 aa14.3□□□□□ -0.12
VPS11-207ENST00000620429 MAPKBP1O60336 1514 aa14.29□□□□□ -0.12
VPS11-207ENST00000620429 WASHC2AQ641Q2 1341 aa14.29□□□□□ -0.12
VPS11-207ENST00000620429 PAK3O75914 559 aaPredicted RBP14.29□□□□□ -0.12
VPS11-207ENST00000620429 CCNB3Q8WWL7 1395 aa14.27□□□□□ -0.13
VPS11-207ENST00000620429 ERCC6L2Q5T890 1561 aa14.26□□□□□ -0.13
VPS11-207ENST00000620429 AEBP2Q6ZN18 517 aaPredicted RBP14.25□□□□□ -0.13
VPS11-207ENST00000620429 CUL7Q14999 1698 aa14.25□□□□□ -0.13
VPS11-207ENST00000620429 TIAM1Q13009 1591 aa14.25□□□□□ -0.13
VPS11-207ENST00000620429 WASHC2CQ9Y4E1 1318 aa14.25□□□□□ -0.13
VPS11-207ENST00000620429 PCF11O94913 1555 aaKnown RBP14.24□□□□□ -0.13
VPS11-207ENST00000620429 GLIPR1L2Q4G1C9 344 aa14.23□□□□□ -0.13
VPS11-207ENST00000620429 DDX10Q13206 875 aaKnown RBP14.22□□□□□ -0.13
VPS11-207ENST00000620429 CCER2I3L3R5 266 aa14.22□□□□□ -0.13
VPS11-207ENST00000620429 RSPH6AQ9H0K4 717 aa14.21□□□□□ -0.13
VPS11-207ENST00000620429 ABCC10Q5T3U5 1492 aa14.21□□□□□ -0.13
VPS11-207ENST00000620429 LRRC9Q6ZRR7 1453 aa14.21□□□□□ -0.13
VPS11-207ENST00000620429 RAB3GAP2Q9H2M9 1393 aa14.21□□□□□ -0.13
VPS11-207ENST00000620429 PHLDB1Q86UU1 1377 aa14.2□□□□□ -0.14
VPS11-207ENST00000620429 PRG4Q92954 1404 aaPredicted RBP14.2□□□□□ -0.14
VPS11-207ENST00000620429 USP35Q9P2H5 1018 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms