RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 NISCHQ9Y2I1 1504 aa20.47■□□□□ 0.87
VPS11-207ENST00000620429 CCDC180Q9P1Z9 1646 aa18.52■□□□□ 0.56
VPS11-207ENST00000620429 ABCC9O60706 1549 aa18.2■□□□□ 0.5
VPS11-207ENST00000620429 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
VPS11-207ENST00000620429 MYT1Q01538 1121 aa17.67■□□□□ 0.42
VPS11-207ENST00000620429 HRCP23327 699 aa17.59■□□□□ 0.41
VPS11-207ENST00000620429 RB1CC1Q8TDY2 1594 aa17.59■□□□□ 0.41
VPS11-207ENST00000620429 NACADO15069 1562 aa17.48■□□□□ 0.39
VPS11-207ENST00000620429 SHROOM4Q9ULL8 1493 aa17.36■□□□□ 0.37
VPS11-207ENST00000620429 MYO15BQ96JP2 1530 aa17.34■□□□□ 0.37
VPS11-207ENST00000620429 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
VPS11-207ENST00000620429 DCAF8L2P0C7V8 631 aa17.13■□□□□ 0.33
VPS11-207ENST00000620429 UNC13AQ9UPW8 1703 aa17.12■□□□□ 0.33
VPS11-207ENST00000620429 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
VPS11-207ENST00000620429 DCAF1Q9Y4B6 1507 aa16.99■□□□□ 0.31
VPS11-207ENST00000620429 PPARGC1BQ86YN6 1023 aaKnown RBP16.98■□□□□ 0.31
VPS11-207ENST00000620429 BICRAQ9NZM4 1560 aa16.97■□□□□ 0.31
VPS11-207ENST00000620429 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
VPS11-207ENST00000620429 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
VPS11-207ENST00000620429 TTBK1Q5TCY1 1321 aaPredicted RBP16.85■□□□□ 0.29
VPS11-207ENST00000620429 PABPN1Q86U42 306 aaKnown RBP eCLIP16.76■□□□□ 0.27
VPS11-207ENST00000620429 PCGF6Q9BYE7 350 aa16.73■□□□□ 0.27
VPS11-207ENST00000620429 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
VPS11-207ENST00000620429 EIF4G1Q04637 1599 aaKnown RBP16.57■□□□□ 0.24
VPS11-207ENST00000620429 CHIC1Q5VXU3 224 aa16.55■□□□□ 0.24
VPS11-207ENST00000620429 CECR2Q9BXF3 1484 aa16.54■□□□□ 0.24
VPS11-207ENST00000620429 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
VPS11-207ENST00000620429 ACIN1Q9UKV3 1341 aaKnown RBP16.37■□□□□ 0.21
VPS11-207ENST00000620429 ZEB1P37275 1124 aaPredicted RBP16.36■□□□□ 0.21
VPS11-207ENST00000620429 NEUROD1Q13562 356 aa16.21■□□□□ 0.19
VPS11-207ENST00000620429 BCL11AQ9H165 835 aa16.21■□□□□ 0.19
VPS11-207ENST00000620429 GTF3C3Q9Y5Q9 886 aa16.19■□□□□ 0.18
VPS11-207ENST00000620429 TRIM26Q12899 539 aaPredicted RBP16.18■□□□□ 0.18
VPS11-207ENST00000620429 CENPBP07199 599 aaPredicted RBP16.16■□□□□ 0.18
VPS11-207ENST00000620429 LOC105371045A0A1W2PR82 267 aa16.14■□□□□ 0.17
VPS11-207ENST00000620429 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
VPS11-207ENST00000620429 CUX2O14529 1486 aa16.11■□□□□ 0.17
VPS11-207ENST00000620429 PRKCSHP14314 528 aaPredicted RBP16.1■□□□□ 0.17
VPS11-207ENST00000620429 DNAJC5Q9H3Z4 198 aa16.06■□□□□ 0.16
VPS11-207ENST00000620429 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
VPS11-207ENST00000620429 FAM9AQ8IZU1 332 aaPredicted RBP16.03■□□□□ 0.16
VPS11-207ENST00000620429 HMGXB3Q12766 1538 aa16■□□□□ 0.15
VPS11-207ENST00000620429 SMARCA2P51531 1590 aa15.97■□□□□ 0.15
VPS11-207ENST00000620429 MROH2BQ7Z745 1585 aa15.94■□□□□ 0.14
VPS11-207ENST00000620429 ATAD2BQ9ULI0 1458 aa15.88■□□□□ 0.13
VPS11-207ENST00000620429 PEG3Q9GZU2 1588 aa15.88■□□□□ 0.13
VPS11-207ENST00000620429 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
VPS11-207ENST00000620429 ERICH6Q7L0X2 663 aa15.87■□□□□ 0.13
VPS11-207ENST00000620429 ANP32EQ9BTT0 268 aa15.83■□□□□ 0.12
VPS11-207ENST00000620429 WIZO95785 1651 aa15.83■□□□□ 0.12
VPS11-207ENST00000620429 ERCC6Q03468 1493 aa15.83■□□□□ 0.12
VPS11-207ENST00000620429 BAZ1AQ9NRL2 1556 aaPredicted RBP15.82■□□□□ 0.12
VPS11-207ENST00000620429 LAMC3Q9Y6N6 1575 aa15.78■□□□□ 0.12
VPS11-207ENST00000620429 APLP2Q06481 763 aa15.74■□□□□ 0.11
VPS11-207ENST00000620429 BAZ1BQ9UIG0 1483 aaKnown RBP15.71■□□□□ 0.11
VPS11-207ENST00000620429 THOC2Q8NI27 1593 aaKnown RBP15.71■□□□□ 0.11
VPS11-207ENST00000620429 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
VPS11-207ENST00000620429 DIEXFQ68CQ4 756 aaKnown RBP15.68■□□□□ 0.1
VPS11-207ENST00000620429 PDS5BQ9NTI5 1447 aa15.61■□□□□ 0.09
VPS11-207ENST00000620429 CSRNP3Q8WYN3 585 aa15.59■□□□□ 0.09
VPS11-207ENST00000620429 NESP48681 1621 aa15.57■□□□□ 0.08
VPS11-207ENST00000620429 EHMT2Q96KQ7 1210 aa15.55■□□□□ 0.08
VPS11-207ENST00000620429 TOP2AP11388 1531 aaKnown RBP15.55■□□□□ 0.08
VPS11-207ENST00000620429 KIF21AQ7Z4S6 1674 aa15.54■□□□□ 0.08
VPS11-207ENST00000620429 CCDC88BA6NC98 1476 aa15.51■□□□□ 0.07
VPS11-207ENST00000620429 WDR62O43379 1518 aa15.49■□□□□ 0.07
VPS11-207ENST00000620429 CLSPNQ9HAW4 1339 aa15.47■□□□□ 0.07
VPS11-207ENST00000620429 MRC2Q9UBG0 1479 aa15.47■□□□□ 0.07
VPS11-207ENST00000620429 CADPSQ9ULU8 1353 aa15.46■□□□□ 0.07
VPS11-207ENST00000620429 TSHZ2Q9NRE2 1034 aa15.42■□□□□ 0.06
VPS11-207ENST00000620429 ABCC8Q09428 1581 aa15.4■□□□□ 0.06
VPS11-207ENST00000620429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.38■□□□□ 0.05
VPS11-207ENST00000620429 CCER1Q8TC90 406 aaPredicted RBP15.37■□□□□ 0.05
VPS11-207ENST00000620429 CEP164Q9UPV0 1460 aa15.34■□□□□ 0.05
VPS11-207ENST00000620429 PRDM2Q13029 1718 aa15.33■□□□□ 0.05
VPS11-207ENST00000620429 YTHDC1Q96MU7 727 aaKnown RBP15.33■□□□□ 0.04
VPS11-207ENST00000620429 SUPT16HQ9Y5B9 1047 aaKnown RBP15.3■□□□□ 0.04
VPS11-207ENST00000620429 CFTRP13569 1480 aa15.3■□□□□ 0.04
VPS11-207ENST00000620429 ZNF316A6NFI3 1004 aaPredicted RBP15.26■□□□□ 0.03
VPS11-207ENST00000620429 FANCD2Q9BXW9 1451 aa15.26■□□□□ 0.03
VPS11-207ENST00000620429 SOGA1O94964 1423 aa15.22■□□□□ 0.03
VPS11-207ENST00000620429 MIER1Q8N108 512 aa15.18■□□□□ 0.02
VPS11-207ENST00000620429 RUSC2Q8N2Y8 1516 aa15.17■□□□□ 0.02
VPS11-207ENST00000620429 WRNQ14191 1432 aaPredicted RBP eCLIP15.15■□□□□ 0.02
VPS11-207ENST00000620429 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
VPS11-207ENST00000620429 OSCARQ8IYS5 282 aa15.11■□□□□ 0.01
VPS11-207ENST00000620429 IFT140Q96RY7 1462 aa15.1■□□□□ 0.01
VPS11-207ENST00000620429 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
VPS11-207ENST00000620429 ANO8Q9HCE9 1232 aaPredicted RBP15.07■□□□□ 0
VPS11-207ENST00000620429 MYT1LQ9UL68 1186 aa15.06■□□□□ 0
VPS11-207ENST00000620429 WDR97A6NE52 1622 aa15.04■□□□□ -0
VPS11-207ENST00000620429 UBTFP17480 764 aaKnown RBP15.01□□□□□ -0.01
VPS11-207ENST00000620429 UBE2Q2Q8WVN8 375 aa15.01□□□□□ -0.01
VPS11-207ENST00000620429 CEP162Q5TB80 1403 aa15.01□□□□□ -0.01
VPS11-207ENST00000620429 DNMBPQ6XZF7 1577 aa15□□□□□ -0.01
VPS11-207ENST00000620429 RIMBP3CA6NJZ7 1639 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 RIMBP3BA6NNM3 1639 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 RIMBP3Q9UFD9 1639 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 EEA1Q15075 1411 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 RBM19Q9Y4C8 960 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms