RNA–Protein interactions for RNA: ENST00000608440.5

CTCFL-218, Transcript of CCCTC-binding factor like, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CTCFL, Length 2,749 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFL-218ENST00000608440 TRIM52Q96A61 297 aa17.67■□□□□ 0.42
CTCFL-218ENST00000608440 BIVM-ERCC5R4GMW8 1640 aa17.67■□□□□ 0.42
CTCFL-218ENST00000608440 LAMC3Q9Y6N6 1575 aa17.65■□□□□ 0.42
CTCFL-218ENST00000608440 PAK3O75914 559 aaPredicted RBP17.64■□□□□ 0.41
CTCFL-218ENST00000608440 IRX6P78412 446 aaPredicted RBP17.64■□□□□ 0.41
CTCFL-218ENST00000608440 NOP58Q9Y2X3 529 aaKnown RBP17.63■□□□□ 0.41
CTCFL-218ENST00000608440 PLEKHG5O94827 1062 aa17.63■□□□□ 0.41
CTCFL-218ENST00000608440 RTL5Q5HYW3 569 aaPredicted RBP17.61■□□□□ 0.41
CTCFL-218ENST00000608440 EEA1Q15075 1411 aa17.59■□□□□ 0.41
CTCFL-218ENST00000608440 CEP164Q9UPV0 1460 aa17.57■□□□□ 0.4
CTCFL-218ENST00000608440 PDS5BQ9NTI5 1447 aa17.55■□□□□ 0.4
CTCFL-218ENST00000608440 FGD5Q6ZNL6 1462 aa17.52■□□□□ 0.4
CTCFL-218ENST00000608440 CEP162Q5TB80 1403 aa17.5■□□□□ 0.39
CTCFL-218ENST00000608440 DNMBPQ6XZF7 1577 aa17.5■□□□□ 0.39
CTCFL-218ENST00000608440 TOPBP1Q92547 1522 aa17.49■□□□□ 0.39
CTCFL-218ENST00000608440 KIF21AQ7Z4S6 1674 aa17.49■□□□□ 0.39
CTCFL-218ENST00000608440 SLC24A1O60721 1099 aa17.49■□□□□ 0.39
CTCFL-218ENST00000608440 URB2Q14146 1524 aaKnown RBP17.47■□□□□ 0.39
CTCFL-218ENST00000608440 DDX10Q13206 875 aaKnown RBP17.46■□□□□ 0.39
CTCFL-218ENST00000608440 TIMELESSQ9UNS1 1208 aa17.46■□□□□ 0.39
CTCFL-218ENST00000608440 PODXL2Q9NZ53 605 aa17.44■□□□□ 0.38
CTCFL-218ENST00000608440 KIF27Q86VH2 1401 aa17.44■□□□□ 0.38
CTCFL-218ENST00000608440 CUX2O14529 1486 aa17.43■□□□□ 0.38
CTCFL-218ENST00000608440 POLA1P09884 1462 aaPredicted RBP17.42■□□□□ 0.38
CTCFL-218ENST00000608440 GOLGA3Q08378 1498 aa17.42■□□□□ 0.38
CTCFL-218ENST00000608440 RAD54L2Q9Y4B4 1467 aa17.41■□□□□ 0.38
CTCFL-218ENST00000608440 UBTFP17480 764 aaKnown RBP17.41■□□□□ 0.38
CTCFL-218ENST00000608440 KIF21BO75037 1637 aa17.38■□□□□ 0.37
CTCFL-218ENST00000608440 RAPGEF2Q9Y4G8 1499 aa17.37■□□□□ 0.37
CTCFL-218ENST00000608440 BRPF3Q9ULD4 1205 aa17.36■□□□□ 0.37
CTCFL-218ENST00000608440 B4GALNT3Q6L9W6 998 aa17.35■□□□□ 0.37
CTCFL-218ENST00000608440 DHX57Q6P158 1386 aaKnown RBP17.34■□□□□ 0.37
CTCFL-218ENST00000608440 ZBTB47Q9UFB7 747 aaPredicted RBP17.34■□□□□ 0.37
CTCFL-218ENST00000608440 MRC2Q9UBG0 1479 aa17.34■□□□□ 0.37
CTCFL-218ENST00000608440 TNIKQ9UKE5 1360 aa17.34■□□□□ 0.37
CTCFL-218ENST00000608440 ERCC6Q03468 1493 aa17.33■□□□□ 0.37
CTCFL-218ENST00000608440 PRXQ9BXM0 1461 aa17.31■□□□□ 0.36
CTCFL-218ENST00000608440 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
CTCFL-218ENST00000608440 IPO9Q96P70 1041 aaKnown RBP17.3■□□□□ 0.36
CTCFL-218ENST00000608440 PPP4R2Q9NY27 417 aa17.3■□□□□ 0.36
CTCFL-218ENST00000608440 ANP32AP39687 249 aaKnown RBP17.29■□□□□ 0.36
CTCFL-218ENST00000608440 ZMYND15Q9H091 742 aa17.29■□□□□ 0.36
CTCFL-218ENST00000608440 VSIG10Q8N0Z9 540 aa17.28■□□□□ 0.36
CTCFL-218ENST00000608440 IGF1RP08069 1367 aa17.28■□□□□ 0.36
CTCFL-218ENST00000608440 NEFMP07197 916 aa17.26■□□□□ 0.35
CTCFL-218ENST00000608440 WASHC2AQ641Q2 1341 aa17.26■□□□□ 0.35
CTCFL-218ENST00000608440 LAS1LQ9Y4W2 734 aaKnown RBP17.26■□□□□ 0.35
CTCFL-218ENST00000608440 ERICH3Q5RHP9 1530 aa17.25■□□□□ 0.35
CTCFL-218ENST00000608440 HNRNPUQ00839 825 aaKnown RBP eCLIP17.25■□□□□ 0.35
CTCFL-218ENST00000608440 TDRD9Q8NDG6 1382 aaKnown RBP17.25■□□□□ 0.35
CTCFL-218ENST00000608440 C11orf95C9JLR9 678 aaPredicted RBP17.24■□□□□ 0.35
CTCFL-218ENST00000608440 ANP32CO43423 234 aa17.24■□□□□ 0.35
CTCFL-218ENST00000608440 RANGAP1P46060 587 aaPredicted RBP17.23■□□□□ 0.35
CTCFL-218ENST00000608440 HIRIP3Q9BW71 556 aaPredicted RBP17.23■□□□□ 0.35
CTCFL-218ENST00000608440 WDR97A6NE52 1622 aa17.23■□□□□ 0.35
CTCFL-218ENST00000608440 WDR62O43379 1518 aa17.23■□□□□ 0.35
CTCFL-218ENST00000608440 GLIPR1L2Q4G1C9 344 aa17.21■□□□□ 0.35
CTCFL-218ENST00000608440 CCER2I3L3R5 266 aa17.21■□□□□ 0.35
CTCFL-218ENST00000608440 DAXXQ9UER7 740 aaPredicted RBP17.21■□□□□ 0.35
CTCFL-218ENST00000608440 CARMIL1Q5VZK9 1371 aa17.2■□□□□ 0.34
CTCFL-218ENST00000608440 TARBP1Q13395 1621 aaKnown RBP17.2■□□□□ 0.34
CTCFL-218ENST00000608440 WASHC2CQ9Y4E1 1318 aa17.19■□□□□ 0.34
CTCFL-218ENST00000608440 THOC2Q8NI27 1593 aaKnown RBP17.18■□□□□ 0.34
CTCFL-218ENST00000608440 RSPH6AQ9H0K4 717 aa17.18■□□□□ 0.34
CTCFL-218ENST00000608440 PPP1R15AO75807 674 aaPredicted RBP17.17■□□□□ 0.34
CTCFL-218ENST00000608440 ABCA5Q8WWZ7 1642 aa17.17■□□□□ 0.34
CTCFL-218ENST00000608440 CLIP1P30622 1438 aa17.17■□□□□ 0.34
CTCFL-218ENST00000608440 GAPVD1Q14C86 1478 aa17.16■□□□□ 0.34
CTCFL-218ENST00000608440 NPM2Q86SE8 214 aaKnown RBP17.14■□□□□ 0.33
CTCFL-218ENST00000608440 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.333e-6■■■□□ 17.1
CTCFL-218ENST00000608440 IFT140Q96RY7 1462 aa17.11■□□□□ 0.33
CTCFL-218ENST00000608440 ZNF608Q9ULD9 1512 aaPredicted RBP17.1■□□□□ 0.33
CTCFL-218ENST00000608440 CUL7Q14999 1698 aa17.09■□□□□ 0.33
CTCFL-218ENST00000608440 USP35Q9P2H5 1018 aa17.08■□□□□ 0.33
CTCFL-218ENST00000608440 SIN3AQ96ST3 1273 aa17.07■□□□□ 0.32
CTCFL-218ENST00000608440 GSE1Q14687 1217 aa17.06■□□□□ 0.32
CTCFL-218ENST00000608440 A0A0U1RQG5 324 aaPredicted RBP17.04■□□□□ 0.32
CTCFL-218ENST00000608440 PBRM1Q86U86 1689 aa17.03■□□□□ 0.32
CTCFL-218ENST00000608440 GRIN2BQ13224 1484 aa17.01■□□□□ 0.31
CTCFL-218ENST00000608440 EIF4G3O43432 1585 aaKnown RBP17■□□□□ 0.31
CTCFL-218ENST00000608440 FRAT1Q92837 279 aaPredicted RBP17■□□□□ 0.31
CTCFL-218ENST00000608440 VPS8Q8N3P4 1428 aa16.99■□□□□ 0.31
CTCFL-218ENST00000608440 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
CTCFL-218ENST00000608440 ADAMTS12P58397 1594 aa16.97■□□□□ 0.31
CTCFL-218ENST00000608440 ARHGAP35Q9NRY4 1499 aa16.97■□□□□ 0.31
CTCFL-218ENST00000608440 PPM1GO15355 546 aaPredicted RBP16.97■□□□□ 0.31
CTCFL-218ENST00000608440 FAM43AQ8N2R8 423 aa16.96■□□□□ 0.31
CTCFL-218ENST00000608440 FHAD1B1AJZ9 1412 aa16.96■□□□□ 0.31
CTCFL-218ENST00000608440 SNAPC4Q5SXM2 1469 aa16.95■□□□□ 0.3
CTCFL-218ENST00000608440 HSP90AA2PQ14568 343 aaPredicted RBP16.91■□□□□ 0.3
CTCFL-218ENST00000608440 CTTNBP2Q8WZ74 1663 aa16.91■□□□□ 0.3
CTCFL-218ENST00000608440 P3H3Q8IVL6 736 aa16.9■□□□□ 0.3
CTCFL-218ENST00000608440 DCAF11Q8TEB1 546 aa16.9■□□□□ 0.3
CTCFL-218ENST00000608440 NFKBIBQ15653 356 aa16.87■□□□□ 0.29
CTCFL-218ENST00000608440 RBM10P98175 930 aaKnown RBP16.86■□□□□ 0.29
CTCFL-218ENST00000608440 FAM9BQ8IZU0 186 aa16.85■□□□□ 0.29
CTCFL-218ENST00000608440 FHOD3Q2V2M9 1422 aa16.85■□□□□ 0.29
CTCFL-218ENST00000608440 MAGI1Q96QZ7 1491 aaPredicted RBP16.85■□□□□ 0.29
CTCFL-218ENST00000608440 NAP1L5Q96NT1 182 aaPredicted RBP16.84■□□□□ 0.29
CTCFL-218ENST00000608440 FBLN2P98095 1184 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms