RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 CARMIL1Q5VZK9 1371 aa21.35■■□□□ 1.01
SMARCA4-219ENST00000592604 FHAD1B1AJZ9 1412 aa21.31■■□□□ 1
SMARCA4-219ENST00000592604 PHLDB1Q86UU1 1377 aa21.31■■□□□ 1
SMARCA4-219ENST00000592604 CFAP43Q8NDM7 1665 aa21.3■■□□□ 1
SMARCA4-219ENST00000592604 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
SMARCA4-219ENST00000592604 TIMELESSQ9UNS1 1208 aa21.28■■□□□ 1
SMARCA4-219ENST00000592604 FGD5Q6ZNL6 1462 aa21.27■■□□□ 1
SMARCA4-219ENST00000592604 ERICH6Q7L0X2 663 aa21.27■■□□□ 1
SMARCA4-219ENST00000592604 WDR97A6NE52 1622 aa21.26■□□□□ 0.99
SMARCA4-219ENST00000592604 KCNH8Q96L42 1107 aa21.22■□□□□ 0.99
SMARCA4-219ENST00000592604 PCF11O94913 1555 aaKnown RBP21.21■□□□□ 0.99
SMARCA4-219ENST00000592604 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.2■□□□□ 0.98
SMARCA4-219ENST00000592604 SIN3AQ96ST3 1273 aa21.19■□□□□ 0.98
SMARCA4-219ENST00000592604 TSHZ2Q9NRE2 1034 aa21.19■□□□□ 0.98
SMARCA4-219ENST00000592604 FAM50AQ14320 339 aaKnown RBP21.18■□□□□ 0.98
SMARCA4-219ENST00000592604 PPP1R15AO75807 674 aaPredicted RBP21.17■□□□□ 0.98
SMARCA4-219ENST00000592604 DDX10Q13206 875 aaKnown RBP21.15■□□□□ 0.98
SMARCA4-219ENST00000592604 FYCO1Q9BQS8 1478 aa21.15■□□□□ 0.98
SMARCA4-219ENST00000592604 AQRO60306 1485 aaKnown RBP eCLIP21.14■□□□□ 0.982e-7■■■■□ 26.1
SMARCA4-219ENST00000592604 EFCAB5A4FU69 1503 aa21.14■□□□□ 0.97
SMARCA4-219ENST00000592604 CASKIN1Q8WXD9 1431 aa21.12■□□□□ 0.97
SMARCA4-219ENST00000592604 CCER2I3L3R5 266 aa21.08■□□□□ 0.97
SMARCA4-219ENST00000592604 FHOD3Q2V2M9 1422 aa21.08■□□□□ 0.97
SMARCA4-219ENST00000592604 P3H3Q8IVL6 736 aa21.08■□□□□ 0.96
SMARCA4-219ENST00000592604 ABCA10Q8WWZ4 1543 aa21.08■□□□□ 0.96
SMARCA4-219ENST00000592604 CC2D2AQ9P2K1 1620 aa21.06■□□□□ 0.96
SMARCA4-219ENST00000592604 FANCD2Q9BXW9 1451 aa21.05■□□□□ 0.96
SMARCA4-219ENST00000592604 DNMBPQ6XZF7 1577 aa21.05■□□□□ 0.96
SMARCA4-219ENST00000592604 CUL7Q14999 1698 aa21.03■□□□□ 0.96
SMARCA4-219ENST00000592604 CTTNBP2Q8WZ74 1663 aa21.03■□□□□ 0.96
SMARCA4-219ENST00000592604 ATP1B4Q9UN42 357 aaPredicted RBP21.02■□□□□ 0.96
SMARCA4-219ENST00000592604 FGD6Q6ZV73 1430 aa21.02■□□□□ 0.96
SMARCA4-219ENST00000592604 FMN1Q68DA7 1419 aa21■□□□□ 0.95
SMARCA4-219ENST00000592604 FKBP8Q14318 412 aa21■□□□□ 0.95
SMARCA4-219ENST00000592604 RAD54L2Q9Y4B4 1467 aa20.99■□□□□ 0.95
SMARCA4-219ENST00000592604 POLA1P09884 1462 aaPredicted RBP20.98■□□□□ 0.95
SMARCA4-219ENST00000592604 ANP32CO43423 234 aa20.98■□□□□ 0.95
SMARCA4-219ENST00000592604 TOPBP1Q92547 1522 aa20.97■□□□□ 0.95
SMARCA4-219ENST00000592604 SNAPC4Q5SXM2 1469 aa20.96■□□□□ 0.95
SMARCA4-219ENST00000592604 HFM1A2PYH4 1435 aa20.96■□□□□ 0.95
SMARCA4-219ENST00000592604 CCDC18Q5T9S5 1454 aa20.96■□□□□ 0.95
SMARCA4-219ENST00000592604 UACAQ9BZF9 1416 aa20.96■□□□□ 0.95
SMARCA4-219ENST00000592604 TONSLQ96HA7 1378 aa20.94■□□□□ 0.94
SMARCA4-219ENST00000592604 ANP32EQ9BTT0 268 aa20.94■□□□□ 0.94
SMARCA4-219ENST00000592604 HIRIP3Q9BW71 556 aaPredicted RBP20.94■□□□□ 0.94
SMARCA4-219ENST00000592604 BCANQ96GW7 911 aa20.93■□□□□ 0.94
SMARCA4-219ENST00000592604 PTPN23Q9H3S7 1636 aa20.93■□□□□ 0.94
SMARCA4-219ENST00000592604 PTPRKQ15262 1439 aa20.92■□□□□ 0.94
SMARCA4-219ENST00000592604 NEFLP07196 543 aa20.9■□□□□ 0.94
SMARCA4-219ENST00000592604 MTUS2Q5JR59 1369 aa20.89■□□□□ 0.94
SMARCA4-219ENST00000592604 SAMD9Q5K651 1589 aa20.89■□□□□ 0.93
SMARCA4-219ENST00000592604 NAIPQ13075 1403 aa20.87■□□□□ 0.93
SMARCA4-219ENST00000592604 LRRIQ1Q96JM4 1722 aa20.86■□□□□ 0.93
SMARCA4-219ENST00000592604 TRIM52Q96A61 297 aa20.86■□□□□ 0.93
SMARCA4-219ENST00000592604 MYOM3Q5VTT5 1437 aa20.85■□□□□ 0.93
SMARCA4-219ENST00000592604 THOC2Q8NI27 1593 aaKnown RBP20.85■□□□□ 0.93
SMARCA4-219ENST00000592604 SLC24A1O60721 1099 aa20.85■□□□□ 0.93
SMARCA4-219ENST00000592604 NCOA2Q15596 1464 aa20.84■□□□□ 0.93
SMARCA4-219ENST00000592604 KDM5BQ9UGL1 1544 aa20.84■□□□□ 0.93
SMARCA4-219ENST00000592604 GRIN2BQ13224 1484 aa20.84■□□□□ 0.93
SMARCA4-219ENST00000592604 SUPT6HQ7KZ85 1726 aaKnown RBP20.82■□□□□ 0.92
SMARCA4-219ENST00000592604 EHBP1L1Q8N3D4 1523 aa20.8■□□□□ 0.92
SMARCA4-219ENST00000592604 ABCA5Q8WWZ7 1642 aa20.78■□□□□ 0.92
SMARCA4-219ENST00000592604 ARHGEF11O15085 1522 aa20.78■□□□□ 0.92
SMARCA4-219ENST00000592604 NESP48681 1621 aa20.77■□□□□ 0.92
SMARCA4-219ENST00000592604 RBM19Q9Y4C8 960 aaKnown RBP20.77■□□□□ 0.91
SMARCA4-219ENST00000592604 UGGT2Q9NYU1 1516 aa20.76■□□□□ 0.91
SMARCA4-219ENST00000592604 URB2Q14146 1524 aaKnown RBP20.74■□□□□ 0.91
SMARCA4-219ENST00000592604 KIF21AQ7Z4S6 1674 aa20.74■□□□□ 0.91
SMARCA4-219ENST00000592604 TCOF1Q13428 1488 aaKnown RBP20.72■□□□□ 0.91
SMARCA4-219ENST00000592604 GCC2Q8IWJ2 1684 aa20.71■□□□□ 0.91
SMARCA4-219ENST00000592604 GAPVD1Q14C86 1478 aa20.71■□□□□ 0.91
SMARCA4-219ENST00000592604 HECW1Q76N89 1606 aa20.7■□□□□ 0.9
SMARCA4-219ENST00000592604 LAMC3Q9Y6N6 1575 aa20.7■□□□□ 0.9
SMARCA4-219ENST00000592604 AKNAQ7Z591 1439 aa20.7■□□□□ 0.9
SMARCA4-219ENST00000592604 TDRD9Q8NDG6 1382 aaKnown RBP20.69■□□□□ 0.9
SMARCA4-219ENST00000592604 DENND4BO75064 1496 aaPredicted RBP20.68■□□□□ 0.9
SMARCA4-219ENST00000592604 MAGI3Q5TCQ9 1506 aa20.68■□□□□ 0.9
SMARCA4-219ENST00000592604 WASHC2AQ641Q2 1341 aa20.67■□□□□ 0.9
SMARCA4-219ENST00000592604 HSPA5P11021 654 aaKnown RBP20.65■□□□□ 0.9
SMARCA4-219ENST00000592604 HNRNPUQ00839 825 aaKnown RBP eCLIP20.64■□□□□ 0.9
SMARCA4-219ENST00000592604 RRP7BPQ9NSQ0 103 aa20.62■□□□□ 0.89
SMARCA4-219ENST00000592604 EIF4G2P78344 907 aaKnown RBP eCLIP20.61■□□□□ 0.89
SMARCA4-219ENST00000592604 MIA2Q96PC5 1412 aa20.6■□□□□ 0.89
SMARCA4-219ENST00000592604 ERICH6BQ5W0A0 696 aa20.6■□□□□ 0.89
SMARCA4-219ENST00000592604 CNTLNQ9NXG0 1405 aa20.59■□□□□ 0.89
SMARCA4-219ENST00000592604 KDM6BO15054 1643 aa20.59■□□□□ 0.89
SMARCA4-219ENST00000592604 CHIC2Q9UKJ5 165 aa20.57■□□□□ 0.88
SMARCA4-219ENST00000592604 MPHOSPH9Q99550 1183 aa20.56■□□□□ 0.88
SMARCA4-219ENST00000592604 EPRSP07814 1512 aaKnown RBP20.56■□□□□ 0.88
SMARCA4-219ENST00000592604 NCOA1Q15788 1441 aa20.54■□□□□ 0.88
SMARCA4-219ENST00000592604 PDS5BQ9NTI5 1447 aa20.54■□□□□ 0.88
SMARCA4-219ENST00000592604 TARBP1Q13395 1621 aaKnown RBP20.53■□□□□ 0.88
SMARCA4-219ENST00000592604 L3MBTL2Q969R5 705 aa20.53■□□□□ 0.88
SMARCA4-219ENST00000592604 FANCIQ9NVI1 1328 aa20.52■□□□□ 0.87
SMARCA4-219ENST00000592604 CCDC7Q96M83 1385 aa20.51■□□□□ 0.87
SMARCA4-219ENST00000592604 CDK11AQ9UQ88 783 aaPredicted RBP20.5■□□□□ 0.87
SMARCA4-219ENST00000592604 IQGAP2Q13576 1575 aa20.5■□□□□ 0.87
SMARCA4-219ENST00000592604 PRKRIP1Q9H875 184 aaPredicted RBP20.5■□□□□ 0.87
SMARCA4-219ENST00000592604 ROCK1Q13464 1354 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms