RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 REM2Q8IYK8 340 aaPredicted RBP20.04■□□□□ 0.8
SMAD4-211ENST00000590499 IFT140Q96RY7 1462 aa20.02■□□□□ 0.8
SMAD4-211ENST00000590499 PIP4P2Q8N4L2 257 aa19.99■□□□□ 0.79
SMAD4-211ENST00000590499 ZBTB22O15209 634 aa19.97■□□□□ 0.79
SMAD4-211ENST00000590499 OSCARQ8IYS5 282 aa19.96■□□□□ 0.79
SMAD4-211ENST00000590499 POLA1P09884 1462 aaPredicted RBP19.96■□□□□ 0.79
SMAD4-211ENST00000590499 CUX1P39880 1505 aa19.96■□□□□ 0.79
SMAD4-211ENST00000590499 ZNF608Q9ULD9 1512 aaPredicted RBP19.96■□□□□ 0.79
SMAD4-211ENST00000590499 TARBP1Q13395 1621 aaKnown RBP19.95■□□□□ 0.78
SMAD4-211ENST00000590499 EIF4G3O43432 1585 aaKnown RBP19.89■□□□□ 0.77
SMAD4-211ENST00000590499 FGD5Q6ZNL6 1462 aa19.88■□□□□ 0.77
SMAD4-211ENST00000590499 RAD54L2Q9Y4B4 1467 aa19.86■□□□□ 0.77
SMAD4-211ENST00000590499 PITPNM1O00562 1244 aa19.83■□□□□ 0.77
SMAD4-211ENST00000590499 SOGA1O94964 1423 aa19.83■□□□□ 0.76
SMAD4-211ENST00000590499 AQRO60306 1485 aaKnown RBP eCLIP19.8■□□□□ 0.76
SMAD4-211ENST00000590499 WDR97A6NE52 1622 aa19.79■□□□□ 0.76
SMAD4-211ENST00000590499 BIVM-ERCC5R4GMW8 1640 aa19.77■□□□□ 0.76
SMAD4-211ENST00000590499 FXR2P51116 673 aaKnown RBP eCLIP19.77■□□□□ 0.76
SMAD4-211ENST00000590499 TOP2BQ02880 1626 aa19.76■□□□□ 0.75
SMAD4-211ENST00000590499 SYNJ1O43426 1573 aa19.75■□□□□ 0.75
SMAD4-211ENST00000590499 HAX1O00165 279 aa19.75■□□□□ 0.75
SMAD4-211ENST00000590499 WRNQ14191 1432 aaPredicted RBP eCLIP19.75■□□□□ 0.75
SMAD4-211ENST00000590499 TDRD9Q8NDG6 1382 aaKnown RBP19.73■□□□□ 0.75
SMAD4-211ENST00000590499 ABCA10Q8WWZ4 1543 aa19.71■□□□□ 0.75
SMAD4-211ENST00000590499 CHD1O14646 1710 aa19.67■□□□□ 0.74
SMAD4-211ENST00000590499 ABCA5Q8WWZ7 1642 aa19.66■□□□□ 0.74
SMAD4-211ENST00000590499 PBRM1Q86U86 1689 aa19.63■□□□□ 0.73
SMAD4-211ENST00000590499 GRIN2BQ13224 1484 aa19.63■□□□□ 0.73
SMAD4-211ENST00000590499 SNAPC4Q5SXM2 1469 aa19.63■□□□□ 0.73
SMAD4-211ENST00000590499 GAPVD1Q14C86 1478 aa19.62■□□□□ 0.73
SMAD4-211ENST00000590499 MAGI1Q96QZ7 1491 aaPredicted RBP19.61■□□□□ 0.73
SMAD4-211ENST00000590499 EVX2Q03828 476 aa19.54■□□□□ 0.72
SMAD4-211ENST00000590499 SYNJ2O15056 1496 aa19.53■□□□□ 0.72
SMAD4-211ENST00000590499 FBLN2P98095 1184 aa19.5■□□□□ 0.71
SMAD4-211ENST00000590499 ATXN8OSP0DMR3 200 aa19.49■□□□□ 0.71
SMAD4-211ENST00000590499 ADAMTS12P58397 1594 aa19.48■□□□□ 0.71
SMAD4-211ENST00000590499 RIMBP3CA6NJZ7 1639 aa19.47■□□□□ 0.71
SMAD4-211ENST00000590499 RIMBP3BA6NNM3 1639 aa19.47■□□□□ 0.71
SMAD4-211ENST00000590499 RIMBP3Q9UFD9 1639 aa19.47■□□□□ 0.71
SMAD4-211ENST00000590499 ERICH3Q5RHP9 1530 aa19.46■□□□□ 0.71
SMAD4-211ENST00000590499 CLASP1Q7Z460 1538 aa19.46■□□□□ 0.71
SMAD4-211ENST00000590499 CHMP7Q8WUX9 453 aaPredicted RBP19.45■□□□□ 0.7
SMAD4-211ENST00000590499 ARHGEF11O15085 1522 aa19.45■□□□□ 0.7
SMAD4-211ENST00000590499 SPDYE2BA6NHP3 402 aa19.44■□□□□ 0.7
SMAD4-211ENST00000590499 SPDYE6P0CI01 402 aa19.44■□□□□ 0.7
SMAD4-211ENST00000590499 SPDYE2Q495Y8 402 aa19.44■□□□□ 0.7
SMAD4-211ENST00000590499 GRIN2AQ12879 1464 aa19.4■□□□□ 0.7
SMAD4-211ENST00000590499 FHAD1B1AJZ9 1412 aa19.39■□□□□ 0.69
SMAD4-211ENST00000590499 CSRNP3Q8WYN3 585 aa19.38■□□□□ 0.69
SMAD4-211ENST00000590499 EHMT2Q96KQ7 1210 aa19.34■□□□□ 0.69
SMAD4-211ENST00000590499 NUP160Q12769 1436 aa19.34■□□□□ 0.69
SMAD4-211ENST00000590499 KIF27Q86VH2 1401 aa19.33■□□□□ 0.68
SMAD4-211ENST00000590499 CEP170Q5SW79 1584 aa19.32■□□□□ 0.68
SMAD4-211ENST00000590499 TRIM41Q8WV44 630 aa19.32■□□□□ 0.68
SMAD4-211ENST00000590499 ARAP1Q96P48 1450 aa19.29■□□□□ 0.68
SMAD4-211ENST00000590499 PRKAR2AP13861 404 aaKnown RBP19.29■□□□□ 0.68
SMAD4-211ENST00000590499 IGF1RP08069 1367 aa19.29■□□□□ 0.68
SMAD4-211ENST00000590499 CUL7Q14999 1698 aa19.27■□□□□ 0.67
SMAD4-211ENST00000590499 SHROOM2Q13796 1616 aa19.23■□□□□ 0.67
SMAD4-211ENST00000590499 SPDYE1Q8NFV5 336 aaPredicted RBP19.23■□□□□ 0.67
SMAD4-211ENST00000590499 CLEC11AQ9Y240 323 aa19.23■□□□□ 0.67
SMAD4-211ENST00000590499 MKRN4PQ13434 485 aaPredicted RBP19.22■□□□□ 0.67
SMAD4-211ENST00000590499 CYB5RLQ6IPT4 315 aa19.19■□□□□ 0.66
SMAD4-211ENST00000590499 RUSC2Q8N2Y8 1516 aa19.19■□□□□ 0.66
SMAD4-211ENST00000590499 C19orf67A6NJJ6 358 aa19.17■□□□□ 0.66
SMAD4-211ENST00000590499 ERCC6L2Q5T890 1561 aa19.17■□□□□ 0.66
SMAD4-211ENST00000590499 SSUH2Q9Y2M2 353 aa19.15■□□□□ 0.66
SMAD4-211ENST00000590499 CARMIL1Q5VZK9 1371 aa19.15■□□□□ 0.66
SMAD4-211ENST00000590499 ZNF692Q9BU19 519 aaPredicted RBP19.12■□□□□ 0.65
SMAD4-211ENST00000590499 KIAA0586Q9BVV6 1533 aa19.1■□□□□ 0.65
SMAD4-211ENST00000590499 JPH4Q96JJ6 628 aa19.06■□□□□ 0.64
SMAD4-211ENST00000590499 PRG4Q92954 1404 aaPredicted RBP19.06■□□□□ 0.64
SMAD4-211ENST00000590499 RAPGEF2Q9Y4G8 1499 aa19.03■□□□□ 0.64
SMAD4-211ENST00000590499 GABBR2O75899 941 aa19.02■□□□□ 0.64
SMAD4-211ENST00000590499 PRXQ9BXM0 1461 aa18.98■□□□□ 0.63
SMAD4-211ENST00000590499 IQGAP2Q13576 1575 aa18.98■□□□□ 0.63
SMAD4-211ENST00000590499 CHADLQ6NUI6 762 aa18.96■□□□□ 0.63
SMAD4-211ENST00000590499 CTTNBP2Q8WZ74 1663 aa18.91■□□□□ 0.62
SMAD4-211ENST00000590499 EEA1Q15075 1411 aa18.9■□□□□ 0.62
SMAD4-211ENST00000590499 UGGT2Q9NYU1 1516 aa18.89■□□□□ 0.61
SMAD4-211ENST00000590499 DISP1Q96F81 1524 aa18.87■□□□□ 0.61
SMAD4-211ENST00000590499 LHX8Q68G74 356 aa18.86■□□□□ 0.61
SMAD4-211ENST00000590499 ADCY10Q96PN6 1610 aa18.85■□□□□ 0.61
SMAD4-211ENST00000590499 CARMIL2Q6F5E8 1435 aa18.84■□□□□ 0.61
SMAD4-211ENST00000590499 PRR29P0C7W0 189 aa18.84■□□□□ 0.61
SMAD4-211ENST00000590499 TNIKQ9UKE5 1360 aa18.82■□□□□ 0.6
SMAD4-211ENST00000590499 KIAA0556O60303 1618 aa18.82■□□□□ 0.6
SMAD4-211ENST00000590499 PTPRGP23470 1445 aa18.8■□□□□ 0.6
SMAD4-211ENST00000590499 KIF21BO75037 1637 aa18.75■□□□□ 0.59
SMAD4-211ENST00000590499 MAPKBP1O60336 1514 aa18.74■□□□□ 0.59
SMAD4-211ENST00000590499 UHRF1BP1LA0JNW5 1464 aa18.72■□□□□ 0.59
SMAD4-211ENST00000590499 GOLGA3Q08378 1498 aa18.72■□□□□ 0.59
SMAD4-211ENST00000590499 KIF13AQ9H1H9 1805 aa18.72■□□□□ 0.59
SMAD4-211ENST00000590499 FAM9AQ8IZU1 332 aaPredicted RBP18.71■□□□□ 0.59
SMAD4-211ENST00000590499 ABCC2Q92887 1545 aa18.69■□□□□ 0.58
SMAD4-211ENST00000590499 UACAQ9BZF9 1416 aa18.69■□□□□ 0.58
SMAD4-211ENST00000590499 TTBK1Q5TCY1 1321 aaPredicted RBP18.68■□□□□ 0.58
SMAD4-211ENST00000590499 SAMD9Q5K651 1589 aa18.67■□□□□ 0.58
SMAD4-211ENST00000590499 NPM1P06748 294 aaKnown RBP eCLIP18.66■□□□□ 0.58
SMAD4-211ENST00000590499 ABCC10Q5T3U5 1492 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms