RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 AEBP2Q6ZN18 517 aaPredicted RBP36.64■■■■□ 3.46
SMAD4-211ENST00000590499 CHIC1Q5VXU3 224 aa34.19■■■■□ 3.06
SMAD4-211ENST00000590499 SENP3Q9H4L4 574 aaPredicted RBP31.28■■■□□ 2.6
SMAD4-211ENST00000590499 PHF23Q9BUL5 403 aaPredicted RBP30.82■■■□□ 2.52
SMAD4-211ENST00000590499 FOXD1Q16676 465 aa29.27■■■□□ 2.28
SMAD4-211ENST00000590499 POTEDQ86YR6 584 aa27.92■■■□□ 2.06
SMAD4-211ENST00000590499 NISCHQ9Y2I1 1504 aa27.59■■■□□ 2.01
SMAD4-211ENST00000590499 MSH5O43196 834 aa27.55■■■□□ 2
SMAD4-211ENST00000590499 PIAS4Q8N2W9 510 aaPredicted RBP27.17■■□□□ 1.94
SMAD4-211ENST00000590499 PLPPR3Q6T4P5 718 aa27.02■■□□□ 1.92
SMAD4-211ENST00000590499 PPP6R1Q9UPN7 881 aa26.95■■□□□ 1.9
SMAD4-211ENST00000590499 ADRA2BP18089 450 aa26.81■■□□□ 1.88
SMAD4-211ENST00000590499 MAPK8IP2Q13387 824 aaPredicted RBP24.81■■□□□ 1.56
SMAD4-211ENST00000590499 DMRT2Q9Y5R5 561 aa24.74■■□□□ 1.55
SMAD4-211ENST00000590499 CCDC180Q9P1Z9 1646 aa24.61■■□□□ 1.53
SMAD4-211ENST00000590499 SCAF1Q9H7N4 1312 aaKnown RBP24.46■■□□□ 1.51
SMAD4-211ENST00000590499 ABCC9O60706 1549 aa24.11■■□□□ 1.45
SMAD4-211ENST00000590499 CACNB1Q02641 598 aaPredicted RBP24■■□□□ 1.43
SMAD4-211ENST00000590499 DCAF8L1A6NGE4 600 aa23.7■■□□□ 1.38
SMAD4-211ENST00000590499 PPP4R3CPQ6ZMV5 832 aa23.64■■□□□ 1.37
SMAD4-211ENST00000590499 HOXD11P31277 338 aaPredicted RBP23.61■■□□□ 1.37
SMAD4-211ENST00000590499 RNF39Q9H2S5 420 aa23.5■■□□□ 1.35
SMAD4-211ENST00000590499 CNKSR2Q8WXI2 1034 aa23.31■■□□□ 1.32
SMAD4-211ENST00000590499 RNF216Q9NWF9 866 aaPredicted RBP23.25■■□□□ 1.31
SMAD4-211ENST00000590499 RB1CC1Q8TDY2 1594 aa23.17■■□□□ 1.3
SMAD4-211ENST00000590499 NACADO15069 1562 aa23.14■■□□□ 1.29
SMAD4-211ENST00000590499 C1QBPQ07021 282 aaKnown RBP23.09■■□□□ 1.29
SMAD4-211ENST00000590499 MYO15BQ96JP2 1530 aa23■■□□□ 1.27
SMAD4-211ENST00000590499 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
SMAD4-211ENST00000590499 DCAF8L2P0C7V8 631 aa22.93■■□□□ 1.26
SMAD4-211ENST00000590499 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.25
SMAD4-211ENST00000590499 DCAF1Q9Y4B6 1507 aa22.85■■□□□ 1.25
SMAD4-211ENST00000590499 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
SMAD4-211ENST00000590499 BICRAQ9NZM4 1560 aa22.53■■□□□ 1.2
SMAD4-211ENST00000590499 NCBP3Q53F19 620 aaKnown RBP22.51■■□□□ 1.19
SMAD4-211ENST00000590499 PABPN1Q86U42 306 aaKnown RBP eCLIP22.47■■□□□ 1.19
SMAD4-211ENST00000590499 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.45■■□□□ 1.18
SMAD4-211ENST00000590499 SCRIBQ14160 1630 aa22.4■■□□□ 1.18
SMAD4-211ENST00000590499 SHROOM4Q9ULL8 1493 aa22.28■■□□□ 1.16
SMAD4-211ENST00000590499 NPM3O75607 178 aaKnown RBP22.24■■□□□ 1.15
SMAD4-211ENST00000590499 U3KPZ7 1027 aaPredicted RBP21.96■■□□□ 1.11
SMAD4-211ENST00000590499 EIF4G1Q04637 1599 aaKnown RBP21.91■■□□□ 1.1
SMAD4-211ENST00000590499 CC2D2AQ9P2K1 1620 aa21.85■■□□□ 1.09
SMAD4-211ENST00000590499 SPINK5Q9NQ38 1064 aaPredicted RBP21.82■■□□□ 1.08
SMAD4-211ENST00000590499 DSG3P32926 999 aa21.81■■□□□ 1.08
SMAD4-211ENST00000590499 CAPN15O75808 1086 aa21.76■■□□□ 1.07
SMAD4-211ENST00000590499 POTEHQ6S545 545 aa21.75■■□□□ 1.07
SMAD4-211ENST00000590499 KCNA4P22459 653 aa21.72■■□□□ 1.07
SMAD4-211ENST00000590499 CECR2Q9BXF3 1484 aa21.69■■□□□ 1.06
SMAD4-211ENST00000590499 SMARCA4P51532 1647 aa21.44■■□□□ 1.02
SMAD4-211ENST00000590499 SLC4A2P04920 1241 aa21.42■■□□□ 1.02
SMAD4-211ENST00000590499 BAZ1AQ9NRL2 1556 aaPredicted RBP21.38■■□□□ 1.01
SMAD4-211ENST00000590499 NCAPD3P42695 1498 aa21.35■■□□□ 1.01
SMAD4-211ENST00000590499 ATAD2BQ9ULI0 1458 aa21.34■■□□□ 1.01
SMAD4-211ENST00000590499 SMARCA2P51531 1590 aa21.3■■□□□ 1
SMAD4-211ENST00000590499 TRHP20396 242 aaPredicted RBP21.28■■□□□ 1
SMAD4-211ENST00000590499 PEG3Q9GZU2 1588 aa21.27■□□□□ 0.99
SMAD4-211ENST00000590499 MROH2BQ7Z745 1585 aa21.26■□□□□ 0.99
SMAD4-211ENST00000590499 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
SMAD4-211ENST00000590499 ABCB7O75027 752 aa21.22■□□□□ 0.99
SMAD4-211ENST00000590499 ZNF219Q9P2Y4 722 aaPredicted RBP21.2■□□□□ 0.98
SMAD4-211ENST00000590499 APLP2Q06481 763 aa21.19■□□□□ 0.98
SMAD4-211ENST00000590499 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
SMAD4-211ENST00000590499 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.06■□□□□ 0.96
SMAD4-211ENST00000590499 HNRNPUL2Q1KMD3 747 aaKnown RBP21.06■□□□□ 0.96
SMAD4-211ENST00000590499 WIZO95785 1651 aa21.02■□□□□ 0.96
SMAD4-211ENST00000590499 RSF1Q96T23 1441 aaPredicted RBP20.96■□□□□ 0.95
SMAD4-211ENST00000590499 SAMD1Q6SPF0 538 aaPredicted RBP20.93■□□□□ 0.94
SMAD4-211ENST00000590499 NESP48681 1621 aa20.86■□□□□ 0.93
SMAD4-211ENST00000590499 TOP2AP11388 1531 aaKnown RBP20.8■□□□□ 0.92
SMAD4-211ENST00000590499 LAMC3Q9Y6N6 1575 aa20.8■□□□□ 0.92
SMAD4-211ENST00000590499 RBM42Q9BTD8 480 aaKnown RBP20.77■□□□□ 0.92
SMAD4-211ENST00000590499 ERCC6Q03468 1493 aa20.76■□□□□ 0.91
SMAD4-211ENST00000590499 CADPSQ9ULU8 1353 aa20.69■□□□□ 0.9
SMAD4-211ENST00000590499 CUX2O14529 1486 aa20.64■□□□□ 0.89
SMAD4-211ENST00000590499 KIF21AQ7Z4S6 1674 aa20.64■□□□□ 0.89
SMAD4-211ENST00000590499 PDS5BQ9NTI5 1447 aa20.62■□□□□ 0.89
SMAD4-211ENST00000590499 THOC2Q8NI27 1593 aaKnown RBP20.62■□□□□ 0.89
SMAD4-211ENST00000590499 POLA2Q14181 598 aa20.6■□□□□ 0.89
SMAD4-211ENST00000590499 CHRDL2Q6WN34 429 aa20.59■□□□□ 0.89
SMAD4-211ENST00000590499 SLC4A1APQ9BWU0 796 aaKnown RBP20.58■□□□□ 0.89
SMAD4-211ENST00000590499 CFTRP13569 1480 aa20.57■□□□□ 0.88
SMAD4-211ENST00000590499 MYCNP04198 464 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-211ENST00000590499 CCDC88BA6NC98 1476 aa20.54■□□□□ 0.88
SMAD4-211ENST00000590499 FANCD2Q9BXW9 1451 aa20.46■□□□□ 0.87
SMAD4-211ENST00000590499 PRDM2Q13029 1718 aa20.46■□□□□ 0.87
SMAD4-211ENST00000590499 MRC2Q9UBG0 1479 aa20.44■□□□□ 0.86
SMAD4-211ENST00000590499 CEP164Q9UPV0 1460 aa20.44■□□□□ 0.86
SMAD4-211ENST00000590499 WDR62O43379 1518 aa20.42■□□□□ 0.86
SMAD4-211ENST00000590499 URB2Q14146 1524 aaKnown RBP20.29■□□□□ 0.84
SMAD4-211ENST00000590499 SUPT5HO00267 1087 aaKnown RBP20.24■□□□□ 0.83
SMAD4-211ENST00000590499 AKT1S1Q96B36 256 aa20.2■□□□□ 0.82
SMAD4-211ENST00000590499 ATF5Q9Y2D1 282 aaPredicted RBP20.18■□□□□ 0.82
SMAD4-211ENST00000590499 TOPBP1Q92547 1522 aa20.14■□□□□ 0.81
SMAD4-211ENST00000590499 FOXD4L1Q9NU39 408 aa20.14■□□□□ 0.81
SMAD4-211ENST00000590499 SP7Q8TDD2 431 aaPredicted RBP20.12■□□□□ 0.81
SMAD4-211ENST00000590499 DNMBPQ6XZF7 1577 aa20.11■□□□□ 0.81
SMAD4-211ENST00000590499 ABCC8Q09428 1581 aa20.1■□□□□ 0.81
SMAD4-211ENST00000590499 DNAJC5Q9H3Z4 198 aa20.1■□□□□ 0.81
SMAD4-211ENST00000590499 ZBTB12Q9Y330 459 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms