RNA–Protein interactions for RNA: ENST00000580014.1

RNF43-204, Transcript of ring finger protein 43, humanhuman

TSL 3

Gene RNF43, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-204ENST00000580014 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
RNF43-204ENST00000580014 ZNF692Q9BU19 519 aaPredicted RBP12.23□□□□□ -0.45
RNF43-204ENST00000580014 ERCC6Q03468 1493 aa12.21□□□□□ -0.45
RNF43-204ENST00000580014 IFNLR1Q8IU57 520 aaPredicted RBP12.21□□□□□ -0.45
RNF43-204ENST00000580014 MRC2Q9UBG0 1479 aa12.21□□□□□ -0.46
RNF43-204ENST00000580014 KIF21AQ7Z4S6 1674 aa12.2□□□□□ -0.46
RNF43-204ENST00000580014 ABCC8Q09428 1581 aa12.2□□□□□ -0.46
RNF43-204ENST00000580014 WRNQ14191 1432 aaPredicted RBP eCLIP12.2□□□□□ -0.46
RNF43-204ENST00000580014 SSUH2Q9Y2M2 353 aa12.19□□□□□ -0.46
RNF43-204ENST00000580014 URB2Q14146 1524 aaKnown RBP12.19□□□□□ -0.46
RNF43-204ENST00000580014 WDR62O43379 1518 aa12.16□□□□□ -0.46
RNF43-204ENST00000580014 CUX1P39880 1505 aa12.16□□□□□ -0.46
RNF43-204ENST00000580014 DNMBPQ6XZF7 1577 aa12.16□□□□□ -0.46
RNF43-204ENST00000580014 THOC2Q8NI27 1593 aaKnown RBP12.16□□□□□ -0.46
RNF43-204ENST00000580014 TOPBP1Q92547 1522 aa12.16□□□□□ -0.46
RNF43-204ENST00000580014 CACNB1Q02641 598 aaPredicted RBP12.15□□□□□ -0.46
RNF43-204ENST00000580014 TOP2BQ02880 1626 aa12.13□□□□□ -0.47
RNF43-204ENST00000580014 STAG3Q9UJ98 1225 aa12.12□□□□□ -0.47
RNF43-204ENST00000580014 SYNJ1O43426 1573 aa12.12□□□□□ -0.47
RNF43-204ENST00000580014 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
RNF43-204ENST00000580014 CUX2O14529 1486 aa12.08□□□□□ -0.48
RNF43-204ENST00000580014 POLA1P09884 1462 aaPredicted RBP12.08□□□□□ -0.48
RNF43-204ENST00000580014 FGD5Q6ZNL6 1462 aa12.07□□□□□ -0.48
RNF43-204ENST00000580014 TRIM41Q8WV44 630 aa12.06□□□□□ -0.48
RNF43-204ENST00000580014 SOGA1O94964 1423 aa12.03□□□□□ -0.48
RNF43-204ENST00000580014 IFT140Q96RY7 1462 aa12.03□□□□□ -0.48
RNF43-204ENST00000580014 KLHL34Q8N239 644 aa12.01□□□□□ -0.49
RNF43-204ENST00000580014 ABCA10Q8WWZ4 1543 aa12.01□□□□□ -0.49
RNF43-204ENST00000580014 TARBP1Q13395 1621 aaKnown RBP12□□□□□ -0.49
RNF43-204ENST00000580014 SPOCK2Q92563 424 aa12□□□□□ -0.49
RNF43-204ENST00000580014 RAD54L2Q9Y4B4 1467 aa12□□□□□ -0.49
RNF43-204ENST00000580014 PKD2Q13563 968 aa11.99□□□□□ -0.49
RNF43-204ENST00000580014 PLCD3Q8N3E9 789 aa11.98□□□□□ -0.49
RNF43-204ENST00000580014 WDR97A6NE52 1622 aa11.94□□□□□ -0.5
RNF43-204ENST00000580014 MIER1Q8N108 512 aa11.93□□□□□ -0.5
RNF43-204ENST00000580014 TDRD9Q8NDG6 1382 aaKnown RBP11.92□□□□□ -0.5
RNF43-204ENST00000580014 ZNF608Q9ULD9 1512 aaPredicted RBP11.92□□□□□ -0.5
RNF43-204ENST00000580014 KIF27Q86VH2 1401 aa11.92□□□□□ -0.5
RNF43-204ENST00000580014 EEA1Q15075 1411 aa11.91□□□□□ -0.5
RNF43-204ENST00000580014 AQRO60306 1485 aaKnown RBP eCLIP11.89□□□□□ -0.51
RNF43-204ENST00000580014 GAPVD1Q14C86 1478 aa11.89□□□□□ -0.51
RNF43-204ENST00000580014 IGF1RP08069 1367 aa11.89□□□□□ -0.51
RNF43-204ENST00000580014 ABCA5Q8WWZ7 1642 aa11.89□□□□□ -0.51
RNF43-204ENST00000580014 RUSC2Q8N2Y8 1516 aa11.88□□□□□ -0.51
RNF43-204ENST00000580014 GRIN2BQ13224 1484 aa11.87□□□□□ -0.51
RNF43-204ENST00000580014 ERICH3Q5RHP9 1530 aa11.86□□□□□ -0.51
RNF43-204ENST00000580014 PLEKHG5O94827 1062 aa11.85□□□□□ -0.51
RNF43-204ENST00000580014 EIF4G3O43432 1585 aaKnown RBP11.84□□□□□ -0.51
RNF43-204ENST00000580014 PLCB2Q00722 1185 aa11.84□□□□□ -0.51
RNF43-204ENST00000580014 ZBTB47Q9UFB7 747 aaPredicted RBP11.84□□□□□ -0.51
RNF43-204ENST00000580014 ECM2O94769 699 aaPredicted RBP11.83□□□□□ -0.52
RNF43-204ENST00000580014 RBM42Q9BTD8 480 aaKnown RBP11.82□□□□□ -0.52
RNF43-204ENST00000580014 MAGI1Q96QZ7 1491 aaPredicted RBP11.81□□□□□ -0.52
RNF43-204ENST00000580014 PRXQ9BXM0 1461 aa11.8□□□□□ -0.52
RNF43-204ENST00000580014 CARMIL1Q5VZK9 1371 aa11.79□□□□□ -0.52
RNF43-204ENST00000580014 FHAD1B1AJZ9 1412 aa11.78□□□□□ -0.52
RNF43-204ENST00000580014 AKT1S1Q96B36 256 aa11.78□□□□□ -0.52
RNF43-204ENST00000580014 SNAPC4Q5SXM2 1469 aa11.77□□□□□ -0.52
RNF43-204ENST00000580014 SYNJ2O15056 1496 aa11.76□□□□□ -0.53
RNF43-204ENST00000580014 PBRM1Q86U86 1689 aa11.75□□□□□ -0.53
RNF43-204ENST00000580014 FAM9AQ8IZU1 332 aaPredicted RBP11.75□□□□□ -0.53
RNF43-204ENST00000580014 SPDYE1Q8NFV5 336 aaPredicted RBP11.75□□□□□ -0.53
RNF43-204ENST00000580014 ADAMTS12P58397 1594 aa11.75□□□□□ -0.53
RNF43-204ENST00000580014 CUL7Q14999 1698 aa11.75□□□□□ -0.53
RNF43-204ENST00000580014 RAPGEF2Q9Y4G8 1499 aa11.73□□□□□ -0.53
RNF43-204ENST00000580014 KIF21BO75037 1637 aa11.71□□□□□ -0.53
RNF43-204ENST00000580014 CIZ1Q9ULV3 898 aaPredicted RBP11.71□□□□□ -0.53
RNF43-204ENST00000580014 CHMP7Q8WUX9 453 aaPredicted RBP11.7□□□□□ -0.54
RNF43-204ENST00000580014 GRIN2AQ12879 1464 aa11.7□□□□□ -0.54
RNF43-204ENST00000580014 RGL2O15211 777 aa11.69□□□□□ -0.54
RNF43-204ENST00000580014 NUP160Q12769 1436 aa11.69□□□□□ -0.54
RNF43-204ENST00000580014 BBXQ8WY36 941 aaPredicted RBP11.67□□□□□ -0.54
RNF43-204ENST00000580014 GOLGA3Q08378 1498 aa11.67□□□□□ -0.54
RNF43-204ENST00000580014 HAP1P54257 671 aaPredicted RBP11.65□□□□□ -0.54
RNF43-204ENST00000580014 REM2Q8IYK8 340 aaPredicted RBP11.65□□□□□ -0.54
RNF43-204ENST00000580014 NPM1P06748 294 aaKnown RBP eCLIP11.64□□□□□ -0.55
RNF43-204ENST00000580014 CLEC11AQ9Y240 323 aa11.64□□□□□ -0.55
RNF43-204ENST00000580014 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.63□□□□□ -0.55
RNF43-204ENST00000580014 KIAA0586Q9BVV6 1533 aa11.63□□□□□ -0.55
RNF43-204ENST00000580014 PRR29P0C7W0 189 aa11.62□□□□□ -0.55
RNF43-204ENST00000580014 TNIKQ9UKE5 1360 aa11.62□□□□□ -0.55
RNF43-204ENST00000580014 GSE1Q14687 1217 aa11.61□□□□□ -0.55
RNF43-204ENST00000580014 CEP170Q5SW79 1584 aa11.61□□□□□ -0.55
RNF43-204ENST00000580014 LOC105371045A0A1W2PR82 267 aa11.6□□□□□ -0.55
RNF43-204ENST00000580014 NUBP1P53384 320 aa11.6□□□□□ -0.55
RNF43-204ENST00000580014 CREBZFQ9NS37 354 aa11.6□□□□□ -0.55
RNF43-204ENST00000580014 CHD1O14646 1710 aa11.6□□□□□ -0.55
RNF43-204ENST00000580014 CLASP1Q7Z460 1538 aa11.59□□□□□ -0.55
RNF43-204ENST00000580014 UBTFP17480 764 aaKnown RBP11.57□□□□□ -0.56
RNF43-204ENST00000580014 UGGT2Q9NYU1 1516 aa11.55□□□□□ -0.56
RNF43-204ENST00000580014 MNX1P50219 401 aaPredicted RBP11.54□□□□□ -0.56
RNF43-204ENST00000580014 JPH4Q96JJ6 628 aa11.54□□□□□ -0.56
RNF43-204ENST00000580014 IQGAP2Q13576 1575 aa11.54□□□□□ -0.56
RNF43-204ENST00000580014 PAXIP1Q6ZW49 1069 aaPredicted RBP11.53□□□□□ -0.56
RNF43-204ENST00000580014 VSIG10Q8N0Z9 540 aa11.52□□□□□ -0.57
RNF43-204ENST00000580014 SHROOM2Q13796 1616 aa11.52□□□□□ -0.57
RNF43-204ENST00000580014 PITPNM1O00562 1244 aa11.51□□□□□ -0.57
RNF43-204ENST00000580014 CHGAP10645 457 aaKnown RBP11.51□□□□□ -0.57
RNF43-204ENST00000580014 DCAF8Q5TAQ9 597 aa11.51□□□□□ -0.57
RNF43-204ENST00000580014 CTTNBP2Q8WZ74 1663 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms