RNA–Protein interactions for RNA: ENST00000580014.1

RNF43-204, Transcript of ring finger protein 43, humanhuman

TSL 3

Gene RNF43, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-204ENST00000580014 CHIC1Q5VXU3 224 aa21.01■□□□□ 0.95
RNF43-204ENST00000580014 AEBP2Q6ZN18 517 aaPredicted RBP21■□□□□ 0.95
RNF43-204ENST00000580014 PHF23Q9BUL5 403 aaPredicted RBP18.52■□□□□ 0.56
RNF43-204ENST00000580014 SENP3Q9H4L4 574 aaPredicted RBP17.76■□□□□ 0.43
RNF43-204ENST00000580014 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
RNF43-204ENST00000580014 NISCHQ9Y2I1 1504 aa16.88■□□□□ 0.29
RNF43-204ENST00000580014 FOXD1Q16676 465 aa16.41■□□□□ 0.22
RNF43-204ENST00000580014 ADRA2BP18089 450 aa16.17■□□□□ 0.18
RNF43-204ENST00000580014 PPP6R1Q9UPN7 881 aa16.16■□□□□ 0.18
RNF43-204ENST00000580014 PIAS4Q8N2W9 510 aaPredicted RBP15.59■□□□□ 0.09
RNF43-204ENST00000580014 KCNA4P22459 653 aa15.45■□□□□ 0.06
RNF43-204ENST00000580014 PPP4R3CPQ6ZMV5 832 aa15.27■□□□□ 0.04
RNF43-204ENST00000580014 NCBP3Q53F19 620 aaKnown RBP15.03■□□□□ -0
RNF43-204ENST00000580014 MSH5O43196 834 aa14.96□□□□□ -0.01
RNF43-204ENST00000580014 EHMT2Q96KQ7 1210 aa14.93□□□□□ -0.02
RNF43-204ENST00000580014 CCDC180Q9P1Z9 1646 aa14.84□□□□□ -0.03
RNF43-204ENST00000580014 SLC4A1APQ9BWU0 796 aaKnown RBP14.82□□□□□ -0.04
RNF43-204ENST00000580014 SCAF1Q9H7N4 1312 aaKnown RBP14.82□□□□□ -0.04
RNF43-204ENST00000580014 NPM3O75607 178 aaKnown RBP14.79□□□□□ -0.04
RNF43-204ENST00000580014 CNKSR2Q8WXI2 1034 aa14.75□□□□□ -0.05
RNF43-204ENST00000580014 CSRNP3Q8WYN3 585 aa14.55□□□□□ -0.08
RNF43-204ENST00000580014 MAPK8IP2Q13387 824 aaPredicted RBP14.52□□□□□ -0.09
RNF43-204ENST00000580014 POTEDQ86YR6 584 aa14.48□□□□□ -0.09
RNF43-204ENST00000580014 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
RNF43-204ENST00000580014 DNAJC5BQ9UF47 199 aa14.35□□□□□ -0.11
RNF43-204ENST00000580014 DMRT2Q9Y5R5 561 aa14.26□□□□□ -0.13
RNF43-204ENST00000580014 ZBTB22O15209 634 aa14.24□□□□□ -0.13
RNF43-204ENST00000580014 ABCC9O60706 1549 aa14.23□□□□□ -0.13
RNF43-204ENST00000580014 HOXD11P31277 338 aaPredicted RBP14.16□□□□□ -0.14
RNF43-204ENST00000580014 ZCCHC6Q5VYS8 1495 aaKnown RBP14.12□□□□□ -0.15
RNF43-204ENST00000580014 FOXD4L1Q9NU39 408 aa14.11□□□□□ -0.15
RNF43-204ENST00000580014 DCAF1Q9Y4B6 1507 aa14.04□□□□□ -0.16
RNF43-204ENST00000580014 MYO15BQ96JP2 1530 aa14.01□□□□□ -0.17
RNF43-204ENST00000580014 NACADO15069 1562 aa13.92□□□□□ -0.18
RNF43-204ENST00000580014 DCAF8L2P0C7V8 631 aa13.87□□□□□ -0.19
RNF43-204ENST00000580014 SLC4A2P04920 1241 aa13.85□□□□□ -0.19
RNF43-204ENST00000580014 RB1CC1Q8TDY2 1594 aa13.83□□□□□ -0.19
RNF43-204ENST00000580014 MYCNP04198 464 aaPredicted RBP13.67□□□□□ -0.22
RNF43-204ENST00000580014 ATXN8OSP0DMR3 200 aa13.59□□□□□ -0.23
RNF43-204ENST00000580014 DCAF8L1A6NGE4 600 aa13.57□□□□□ -0.24
RNF43-204ENST00000580014 SCRIBQ14160 1630 aa13.5□□□□□ -0.25
RNF43-204ENST00000580014 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.47□□□□□ -0.25
RNF43-204ENST00000580014 BICRAQ9NZM4 1560 aa13.45□□□□□ -0.26
RNF43-204ENST00000580014 UNC13AQ9UPW8 1703 aa13.44□□□□□ -0.26
RNF43-204ENST00000580014 SHROOM4Q9ULL8 1493 aa13.38□□□□□ -0.27
RNF43-204ENST00000580014 PABPN1Q86U42 306 aaKnown RBP eCLIP13.36□□□□□ -0.27
RNF43-204ENST00000580014 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.33□□□□□ -0.28
RNF43-204ENST00000580014 HNRNPUL2Q1KMD3 747 aaKnown RBP13.33□□□□□ -0.28
RNF43-204ENST00000580014 U3KPZ7 1027 aaPredicted RBP13.32□□□□□ -0.28
RNF43-204ENST00000580014 SAMD1Q6SPF0 538 aaPredicted RBP13.3□□□□□ -0.28
RNF43-204ENST00000580014 ATF5Q9Y2D1 282 aaPredicted RBP13.24□□□□□ -0.29
RNF43-204ENST00000580014 FKBP8Q14318 412 aa13.12□□□□□ -0.31
RNF43-204ENST00000580014 CECR2Q9BXF3 1484 aa13.1□□□□□ -0.31
RNF43-204ENST00000580014 APLP2Q06481 763 aa13.09□□□□□ -0.31
RNF43-204ENST00000580014 BAZ1AQ9NRL2 1556 aaPredicted RBP13.04□□□□□ -0.32
RNF43-204ENST00000580014 EIF4G1Q04637 1599 aaKnown RBP13.03□□□□□ -0.32
RNF43-204ENST00000580014 ZNF219Q9P2Y4 722 aaPredicted RBP13□□□□□ -0.33
RNF43-204ENST00000580014 SMARCA4P51532 1647 aa12.99□□□□□ -0.33
RNF43-204ENST00000580014 MROH2BQ7Z745 1585 aa12.99□□□□□ -0.33
RNF43-204ENST00000580014 RSF1Q96T23 1441 aaPredicted RBP12.98□□□□□ -0.33
RNF43-204ENST00000580014 PEG3Q9GZU2 1588 aa12.93□□□□□ -0.34
RNF43-204ENST00000580014 NCAPD3P42695 1498 aa12.9□□□□□ -0.34
RNF43-204ENST00000580014 ATAD2BQ9ULI0 1458 aa12.9□□□□□ -0.34
RNF43-204ENST00000580014 CC2D2AQ9P2K1 1620 aa12.88□□□□□ -0.35
RNF43-204ENST00000580014 SMARCA2P51531 1590 aa12.87□□□□□ -0.35
RNF43-204ENST00000580014 RNF39Q9H2S5 420 aa12.86□□□□□ -0.35
RNF43-204ENST00000580014 AMER1Q5JTC6 1135 aaPredicted RBP12.84□□□□□ -0.35
RNF43-204ENST00000580014 HMGXB3Q12766 1538 aa12.81□□□□□ -0.36
RNF43-204ENST00000580014 WIZO95785 1651 aa12.8□□□□□ -0.36
RNF43-204ENST00000580014 SPINK5Q9NQ38 1064 aaPredicted RBP12.78□□□□□ -0.36
RNF43-204ENST00000580014 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
RNF43-204ENST00000580014 TRHP20396 242 aaPredicted RBP12.76□□□□□ -0.37
RNF43-204ENST00000580014 BAZ1BQ9UIG0 1483 aaKnown RBP12.76□□□□□ -0.37
RNF43-204ENST00000580014 SUPT5HO00267 1087 aaKnown RBP12.75□□□□□ -0.37
RNF43-204ENST00000580014 TOP2AP11388 1531 aaKnown RBP12.74□□□□□ -0.37
RNF43-204ENST00000580014 C1QBPQ07021 282 aaKnown RBP12.74□□□□□ -0.37
RNF43-204ENST00000580014 CAPN15O75808 1086 aa12.71□□□□□ -0.37
RNF43-204ENST00000580014 MKRN4PQ13434 485 aaPredicted RBP12.71□□□□□ -0.37
RNF43-204ENST00000580014 FBLN2P98095 1184 aa12.67□□□□□ -0.38
RNF43-204ENST00000580014 POLA2Q14181 598 aa12.66□□□□□ -0.38
RNF43-204ENST00000580014 SPDYE4A6NLX3 237 aa12.65□□□□□ -0.38
RNF43-204ENST00000580014 CCDC88BA6NC98 1476 aa12.6□□□□□ -0.39
RNF43-204ENST00000580014 PROM2Q8N271 834 aa12.55□□□□□ -0.4
RNF43-204ENST00000580014 FBXO3Q9UK99 471 aa12.54□□□□□ -0.4
RNF43-204ENST00000580014 ZBTB12Q9Y330 459 aaPredicted RBP12.54□□□□□ -0.4
RNF43-204ENST00000580014 CADPSQ9ULU8 1353 aa12.51□□□□□ -0.41
RNF43-204ENST00000580014 ABCB7O75027 752 aa12.5□□□□□ -0.41
RNF43-204ENST00000580014 CFTRP13569 1480 aa12.5□□□□□ -0.41
RNF43-204ENST00000580014 LAMC3Q9Y6N6 1575 aa12.43□□□□□ -0.42
RNF43-204ENST00000580014 NESP48681 1621 aa12.4□□□□□ -0.42
RNF43-204ENST00000580014 DSG3P32926 999 aa12.4□□□□□ -0.42
RNF43-204ENST00000580014 PDS5BQ9NTI5 1447 aa12.37□□□□□ -0.43
RNF43-204ENST00000580014 SLC24A1O60721 1099 aa12.36□□□□□ -0.43
RNF43-204ENST00000580014 VASPP50552 380 aaPredicted RBP12.35□□□□□ -0.43
RNF43-204ENST00000580014 FANCD2Q9BXW9 1451 aa12.32□□□□□ -0.44
RNF43-204ENST00000580014 PRDM2Q13029 1718 aa12.28□□□□□ -0.44
RNF43-204ENST00000580014 CEP164Q9UPV0 1460 aa12.26□□□□□ -0.45
RNF43-204ENST00000580014 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
RNF43-204ENST00000580014 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
RNF43-204ENST00000580014 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms