RNA–Protein interactions for RNA: ENST00000578078.1

KRT39-203, Transcript of keratin 39, humanhuman

TSL 1 (best)

Gene KRT39, Length 1,689 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39-203ENST00000578078 ACIN1Q9UKV3 1341 aaKnown RBP10.64□□□□□ -0.71
KRT39-203ENST00000578078 C14orf37Q86TY3 774 aa10.63□□□□□ -0.71
KRT39-203ENST00000578078 ABCC8Q09428 1581 aa10.63□□□□□ -0.71
KRT39-203ENST00000578078 TRIM26Q12899 539 aaPredicted RBP10.62□□□□□ -0.71
KRT39-203ENST00000578078 LOC105371045A0A1W2PR82 267 aa10.61□□□□□ -0.71
KRT39-203ENST00000578078 DNAJC5Q9H3Z4 198 aa10.61□□□□□ -0.71
KRT39-203ENST00000578078 DMRT2Q9Y5R5 561 aa10.61□□□□□ -0.71
KRT39-203ENST00000578078 NCAPD3P42695 1498 aa10.6□□□□□ -0.71
KRT39-203ENST00000578078 MSH5O43196 834 aa10.6□□□□□ -0.71
KRT39-203ENST00000578078 CENPBP07199 599 aaPredicted RBP10.58□□□□□ -0.72
KRT39-203ENST00000578078 FAM9AQ8IZU1 332 aaPredicted RBP10.56□□□□□ -0.72
KRT39-203ENST00000578078 ECM2O94769 699 aaPredicted RBP10.55□□□□□ -0.72
KRT39-203ENST00000578078 RANGAP1P46060 587 aaPredicted RBP10.53□□□□□ -0.72
KRT39-203ENST00000578078 SAMD1Q6SPF0 538 aaPredicted RBP10.53□□□□□ -0.72
KRT39-203ENST00000578078 WRNQ14191 1432 aaPredicted RBP eCLIP10.52□□□□□ -0.72
KRT39-203ENST00000578078 PRDM2Q13029 1718 aa10.52□□□□□ -0.73
KRT39-203ENST00000578078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.5□□□□□ -0.73
KRT39-203ENST00000578078 HNRNPUL2Q1KMD3 747 aaKnown RBP10.5□□□□□ -0.73
KRT39-203ENST00000578078 EEA1Q15075 1411 aa10.5□□□□□ -0.73
KRT39-203ENST00000578078 CC2D2AQ9P2K1 1620 aa10.5□□□□□ -0.73
KRT39-203ENST00000578078 SYNJ1O43426 1573 aa10.49□□□□□ -0.73
KRT39-203ENST00000578078 PODXL2Q9NZ53 605 aa10.47□□□□□ -0.73
KRT39-203ENST00000578078 TOP2BQ02880 1626 aa10.45□□□□□ -0.74
KRT39-203ENST00000578078 BIVM-ERCC5R4GMW8 1640 aa10.45□□□□□ -0.74
KRT39-203ENST00000578078 RGL2O15211 777 aa10.44□□□□□ -0.74
KRT39-203ENST00000578078 SPOCK2Q92563 424 aa10.44□□□□□ -0.74
KRT39-203ENST00000578078 ZNF219Q9P2Y4 722 aaPredicted RBP10.44□□□□□ -0.74
KRT39-203ENST00000578078 CFTRP13569 1480 aa10.43□□□□□ -0.74
KRT39-203ENST00000578078 SOGA1O94964 1423 aa10.43□□□□□ -0.74
KRT39-203ENST00000578078 CLSPNQ9HAW4 1339 aa10.42□□□□□ -0.74
KRT39-203ENST00000578078 NEUROD1Q13562 356 aa10.41□□□□□ -0.74
KRT39-203ENST00000578078 BCL11AQ9H165 835 aa10.41□□□□□ -0.74
KRT39-203ENST00000578078 MKRN4PQ13434 485 aaPredicted RBP10.38□□□□□ -0.75
KRT39-203ENST00000578078 KIF21BO75037 1637 aa10.37□□□□□ -0.75
KRT39-203ENST00000578078 RUSC2Q8N2Y8 1516 aa10.37□□□□□ -0.75
KRT39-203ENST00000578078 GOLGA3Q08378 1498 aa10.36□□□□□ -0.75
KRT39-203ENST00000578078 CUX1P39880 1505 aa10.35□□□□□ -0.75
KRT39-203ENST00000578078 CHGAP10645 457 aaKnown RBP10.34□□□□□ -0.75
KRT39-203ENST00000578078 KLHL34Q8N239 644 aa10.34□□□□□ -0.75
KRT39-203ENST00000578078 CEP164Q9UPV0 1460 aa10.34□□□□□ -0.75
KRT39-203ENST00000578078 CADPSQ9ULU8 1353 aa10.34□□□□□ -0.75
KRT39-203ENST00000578078 TNIKQ9UKE5 1360 aa10.33□□□□□ -0.76
KRT39-203ENST00000578078 CEP162Q5TB80 1403 aa10.31□□□□□ -0.76
KRT39-203ENST00000578078 APLP2Q06481 763 aa10.29□□□□□ -0.76
KRT39-203ENST00000578078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.29□□□□□ -0.76
KRT39-203ENST00000578078 ANP32EQ9BTT0 268 aa10.29□□□□□ -0.76
KRT39-203ENST00000578078 U3KPZ7 1027 aaPredicted RBP10.29□□□□□ -0.76
KRT39-203ENST00000578078 UBTFP17480 764 aaKnown RBP10.28□□□□□ -0.76
KRT39-203ENST00000578078 LAMC3Q9Y6N6 1575 aa10.27□□□□□ -0.77
KRT39-203ENST00000578078 ERICH3Q5RHP9 1530 aa10.26□□□□□ -0.77
KRT39-203ENST00000578078 FANCD2Q9BXW9 1451 aa10.25□□□□□ -0.77
KRT39-203ENST00000578078 KIF27Q86VH2 1401 aa10.25□□□□□ -0.77
KRT39-203ENST00000578078 DNMBPQ6XZF7 1577 aa10.23□□□□□ -0.77
KRT39-203ENST00000578078 RAPGEF2Q9Y4G8 1499 aa10.23□□□□□ -0.77
KRT39-203ENST00000578078 FGD5Q6ZNL6 1462 aa10.21□□□□□ -0.77
KRT39-203ENST00000578078 HS6ST3Q8IZP7 471 aa10.21□□□□□ -0.78
KRT39-203ENST00000578078 PRXQ9BXM0 1461 aa10.21□□□□□ -0.78
KRT39-203ENST00000578078 NESP48681 1621 aa10.2□□□□□ -0.78
KRT39-203ENST00000578078 CLIP1P30622 1438 aa10.19□□□□□ -0.78
KRT39-203ENST00000578078 DIEXFQ68CQ4 756 aaKnown RBP10.18□□□□□ -0.78
KRT39-203ENST00000578078 CUX2O14529 1486 aa10.18□□□□□ -0.78
KRT39-203ENST00000578078 BRPF1P55201 1214 aaPredicted RBP10.17□□□□□ -0.78
KRT39-203ENST00000578078 NPM2Q86SE8 214 aaKnown RBP10.17□□□□□ -0.78
KRT39-203ENST00000578078 TOPBP1Q92547 1522 aa10.16□□□□□ -0.78
KRT39-203ENST00000578078 PDS5BQ9NTI5 1447 aa10.15□□□□□ -0.78
KRT39-203ENST00000578078 KIF21AQ7Z4S6 1674 aa10.15□□□□□ -0.78
KRT39-203ENST00000578078 VPS8Q8N3P4 1428 aa10.13□□□□□ -0.79
KRT39-203ENST00000578078 POLA1P09884 1462 aaPredicted RBP10.13□□□□□ -0.79
KRT39-203ENST00000578078 WDR97A6NE52 1622 aa10.12□□□□□ -0.79
KRT39-203ENST00000578078 ABCA10Q8WWZ4 1543 aa10.12□□□□□ -0.79
KRT39-203ENST00000578078 CUL7Q14999 1698 aa10.11□□□□□ -0.79
KRT39-203ENST00000578078 URB2Q14146 1524 aaKnown RBP10.11□□□□□ -0.79
KRT39-203ENST00000578078 MYT1LQ9UL68 1186 aa10.1□□□□□ -0.79
KRT39-203ENST00000578078 IGF1RP08069 1367 aa10.09□□□□□ -0.79
KRT39-203ENST00000578078 RAD54L2Q9Y4B4 1467 aa10.08□□□□□ -0.8
KRT39-203ENST00000578078 CARMIL1Q5VZK9 1371 aa10.07□□□□□ -0.8
KRT39-203ENST00000578078 PLCD3Q8N3E9 789 aa10.07□□□□□ -0.8
KRT39-203ENST00000578078 STAG3Q9UJ98 1225 aa10.07□□□□□ -0.8
KRT39-203ENST00000578078 CIZ1Q9ULV3 898 aaPredicted RBP10.07□□□□□ -0.8
KRT39-203ENST00000578078 GTPBP6O43824 516 aaPredicted RBP10.06□□□□□ -0.8
KRT39-203ENST00000578078 NKX1-1Q15270 411 aaPredicted RBP10.06□□□□□ -0.8
KRT39-203ENST00000578078 LMOD2Q6P5Q4 547 aa10.06□□□□□ -0.8
KRT39-203ENST00000578078 ABCA5Q8WWZ7 1642 aa10.06□□□□□ -0.8
KRT39-203ENST00000578078 ARAP1Q96P48 1450 aa10.05□□□□□ -0.8
KRT39-203ENST00000578078 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.05□□□□□ -0.8
KRT39-203ENST00000578078 CTTNBP2Q8WZ74 1663 aa10.05□□□□□ -0.8
KRT39-203ENST00000578078 DCAF8L1A6NGE4 600 aa10.04□□□□□ -0.8
KRT39-203ENST00000578078 P3H3Q8IVL6 736 aa10.04□□□□□ -0.8
KRT39-203ENST00000578078 MRC2Q9UBG0 1479 aa10.02□□□□□ -0.81
KRT39-203ENST00000578078 TARBP1Q13395 1621 aaKnown RBP10.02□□□□□ -0.81
KRT39-203ENST00000578078 ARHGAP35Q9NRY4 1499 aa10.01□□□□□ -0.81
KRT39-203ENST00000578078 PBRM1Q86U86 1689 aa10□□□□□ -0.81
KRT39-203ENST00000578078 GAPVD1Q14C86 1478 aa9.99□□□□□ -0.81
KRT39-203ENST00000578078 NEUROD2Q15784 382 aa9.99□□□□□ -0.81
KRT39-203ENST00000578078 ZNF316A6NFI3 1004 aaPredicted RBP9.98□□□□□ -0.81
KRT39-203ENST00000578078 EFCAB5A4FU69 1503 aa9.98□□□□□ -0.81
KRT39-203ENST00000578078 WDR62O43379 1518 aa9.97□□□□□ -0.81
KRT39-203ENST00000578078 RNF25Q96BH1 459 aaPredicted RBP9.96□□□□□ -0.81
KRT39-203ENST00000578078 TDRD9Q8NDG6 1382 aaKnown RBP9.95□□□□□ -0.82
KRT39-203ENST00000578078 MIER1Q8N108 512 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms