RNA–Protein interactions for RNA: ENST00000578078.1

KRT39-203, Transcript of keratin 39, humanhuman

TSL 1 (best)

Gene KRT39, Length 1,689 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39-203ENST00000578078 CHIC1Q5VXU3 224 aa16.34■□□□□ 0.21
KRT39-203ENST00000578078 AEBP2Q6ZN18 517 aaPredicted RBP15.63■□□□□ 0.09
KRT39-203ENST00000578078 PHF23Q9BUL5 403 aaPredicted RBP14.51□□□□□ -0.09
KRT39-203ENST00000578078 NISCHQ9Y2I1 1504 aa14.33□□□□□ -0.12
KRT39-203ENST00000578078 PLPPR3Q6T4P5 718 aa13.75□□□□□ -0.21
KRT39-203ENST00000578078 EHMT2Q96KQ7 1210 aa13.72□□□□□ -0.21
KRT39-203ENST00000578078 SLC24A1O60721 1099 aa13.32□□□□□ -0.28
KRT39-203ENST00000578078 KCNA4P22459 653 aa13.26□□□□□ -0.29
KRT39-203ENST00000578078 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
KRT39-203ENST00000578078 SENP3Q9H4L4 574 aaPredicted RBP13.05□□□□□ -0.32
KRT39-203ENST00000578078 ADRA2BP18089 450 aa12.86□□□□□ -0.35
KRT39-203ENST00000578078 SLC4A1APQ9BWU0 796 aaKnown RBP12.8□□□□□ -0.36
KRT39-203ENST00000578078 RTN4Q9NQC3 1192 aaKnown RBP12.69□□□□□ -0.38
KRT39-203ENST00000578078 AMER1Q5JTC6 1135 aaPredicted RBP12.65□□□□□ -0.38
KRT39-203ENST00000578078 CCDC180Q9P1Z9 1646 aa12.48□□□□□ -0.41
KRT39-203ENST00000578078 PPP6R1Q9UPN7 881 aa12.43□□□□□ -0.42
KRT39-203ENST00000578078 PPP4R3CPQ6ZMV5 832 aa12.26□□□□□ -0.45
KRT39-203ENST00000578078 ZBTB22O15209 634 aa12.25□□□□□ -0.45
KRT39-203ENST00000578078 NCBP3Q53F19 620 aaKnown RBP12.23□□□□□ -0.45
KRT39-203ENST00000578078 NPM3O75607 178 aaKnown RBP12.1□□□□□ -0.47
KRT39-203ENST00000578078 ZCCHC6Q5VYS8 1495 aaKnown RBP12.08□□□□□ -0.48
KRT39-203ENST00000578078 FOXD1Q16676 465 aa12□□□□□ -0.49
KRT39-203ENST00000578078 PELP1Q8IZL8 1130 aaKnown RBP11.99□□□□□ -0.49
KRT39-203ENST00000578078 FOXD4L1Q9NU39 408 aa11.87□□□□□ -0.51
KRT39-203ENST00000578078 DCAF1Q9Y4B6 1507 aa11.86□□□□□ -0.51
KRT39-203ENST00000578078 MYT1Q01538 1121 aa11.81□□□□□ -0.52
KRT39-203ENST00000578078 SHROOM4Q9ULL8 1493 aa11.8□□□□□ -0.52
KRT39-203ENST00000578078 DCAF8L2P0C7V8 631 aa11.75□□□□□ -0.53
KRT39-203ENST00000578078 FKBP8Q14318 412 aa11.72□□□□□ -0.53
KRT39-203ENST00000578078 CNKSR2Q8WXI2 1034 aa11.66□□□□□ -0.54
KRT39-203ENST00000578078 MYO15BQ96JP2 1530 aa11.65□□□□□ -0.55
KRT39-203ENST00000578078 PRKCSHP14314 528 aaPredicted RBP11.63□□□□□ -0.55
KRT39-203ENST00000578078 DNAJC5BQ9UF47 199 aa11.62□□□□□ -0.55
KRT39-203ENST00000578078 PLCB2Q00722 1185 aa11.61□□□□□ -0.55
KRT39-203ENST00000578078 BCANQ96GW7 911 aa11.58□□□□□ -0.56
KRT39-203ENST00000578078 PIAS4Q8N2W9 510 aaPredicted RBP11.57□□□□□ -0.56
KRT39-203ENST00000578078 ABCC9O60706 1549 aa11.56□□□□□ -0.56
KRT39-203ENST00000578078 TAOK2Q9UL54 1235 aa11.54□□□□□ -0.56
KRT39-203ENST00000578078 NACADO15069 1562 aa11.54□□□□□ -0.56
KRT39-203ENST00000578078 SCRIBQ14160 1630 aa11.47□□□□□ -0.57
KRT39-203ENST00000578078 SUPT5HO00267 1087 aaKnown RBP11.45□□□□□ -0.58
KRT39-203ENST00000578078 HRCP23327 699 aa11.44□□□□□ -0.58
KRT39-203ENST00000578078 HAP1P54257 671 aaPredicted RBP11.42□□□□□ -0.58
KRT39-203ENST00000578078 RB1CC1Q8TDY2 1594 aa11.41□□□□□ -0.58
KRT39-203ENST00000578078 DAXXQ9UER7 740 aaPredicted RBP11.41□□□□□ -0.58
KRT39-203ENST00000578078 SCAF1Q9H7N4 1312 aaKnown RBP11.37□□□□□ -0.59
KRT39-203ENST00000578078 ATXN8OSP0DMR3 200 aa11.36□□□□□ -0.59
KRT39-203ENST00000578078 TPRNQ4KMQ1 711 aa11.31□□□□□ -0.6
KRT39-203ENST00000578078 TTBK1Q5TCY1 1321 aaPredicted RBP11.31□□□□□ -0.6
KRT39-203ENST00000578078 VSIG10Q8N0Z9 540 aa11.3□□□□□ -0.6
KRT39-203ENST00000578078 UNC13AQ9UPW8 1703 aa11.23□□□□□ -0.61
KRT39-203ENST00000578078 ARXQ96QS3 562 aa11.21□□□□□ -0.61
KRT39-203ENST00000578078 TIMELESSQ9UNS1 1208 aa11.19□□□□□ -0.62
KRT39-203ENST00000578078 SLC4A2P04920 1241 aa11.17□□□□□ -0.62
KRT39-203ENST00000578078 RNF216Q9NWF9 866 aaPredicted RBP11.17□□□□□ -0.62
KRT39-203ENST00000578078 RSF1Q96T23 1441 aaPredicted RBP11.16□□□□□ -0.62
KRT39-203ENST00000578078 MYCNP04198 464 aaPredicted RBP11.14□□□□□ -0.63
KRT39-203ENST00000578078 TULP1O00294 542 aaPredicted RBP11.09□□□□□ -0.63
KRT39-203ENST00000578078 CECR2Q9BXF3 1484 aa11.09□□□□□ -0.63
KRT39-203ENST00000578078 BAZ1AQ9NRL2 1556 aaPredicted RBP11.07□□□□□ -0.64
KRT39-203ENST00000578078 MROH2BQ7Z745 1585 aa11.07□□□□□ -0.64
KRT39-203ENST00000578078 KDM2AQ9Y2K7 1162 aa11.05□□□□□ -0.64
KRT39-203ENST00000578078 WIZO95785 1651 aa11.03□□□□□ -0.64
KRT39-203ENST00000578078 BICRAQ9NZM4 1560 aa11.02□□□□□ -0.65
KRT39-203ENST00000578078 SMARCA4P51532 1647 aa11.01□□□□□ -0.65
KRT39-203ENST00000578078 FBXO3Q9UK99 471 aa10.99□□□□□ -0.65
KRT39-203ENST00000578078 MAPK8IP2Q13387 824 aaPredicted RBP10.98□□□□□ -0.65
KRT39-203ENST00000578078 ERICH6Q7L0X2 663 aa10.96□□□□□ -0.65
KRT39-203ENST00000578078 FBLN2P98095 1184 aa10.95□□□□□ -0.66
KRT39-203ENST00000578078 GTF3C3Q9Y5Q9 886 aa10.95□□□□□ -0.66
KRT39-203ENST00000578078 TOP2AP11388 1531 aaKnown RBP10.91□□□□□ -0.66
KRT39-203ENST00000578078 PABPN1Q86U42 306 aaKnown RBP eCLIP10.9□□□□□ -0.66
KRT39-203ENST00000578078 ZEB1P37275 1124 aaPredicted RBP10.89□□□□□ -0.67
KRT39-203ENST00000578078 HOMEZQ8IX15 550 aa10.89□□□□□ -0.67
KRT39-203ENST00000578078 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.88□□□□□ -0.67
KRT39-203ENST00000578078 PKD2Q13563 968 aa10.86□□□□□ -0.67
KRT39-203ENST00000578078 BBXQ8WY36 941 aaPredicted RBP10.85□□□□□ -0.67
KRT39-203ENST00000578078 PEG3Q9GZU2 1588 aa10.85□□□□□ -0.67
KRT39-203ENST00000578078 HOXD11P31277 338 aaPredicted RBP10.84□□□□□ -0.67
KRT39-203ENST00000578078 VASPP50552 380 aaPredicted RBP10.83□□□□□ -0.68
KRT39-203ENST00000578078 SMARCA2P51531 1590 aa10.81□□□□□ -0.68
KRT39-203ENST00000578078 PAXIP1Q6ZW49 1069 aaPredicted RBP10.81□□□□□ -0.68
KRT39-203ENST00000578078 EIF4G1Q04637 1599 aaKnown RBP10.8□□□□□ -0.68
KRT39-203ENST00000578078 ATF5Q9Y2D1 282 aaPredicted RBP10.79□□□□□ -0.68
KRT39-203ENST00000578078 IFNLR1Q8IU57 520 aaPredicted RBP10.78□□□□□ -0.68
KRT39-203ENST00000578078 CCDC88BA6NC98 1476 aa10.77□□□□□ -0.69
KRT39-203ENST00000578078 TRIM41Q8WV44 630 aa10.76□□□□□ -0.69
KRT39-203ENST00000578078 CFAP44Q96MT7 982 aa10.76□□□□□ -0.69
KRT39-203ENST00000578078 PCGF6Q9BYE7 350 aa10.75□□□□□ -0.69
KRT39-203ENST00000578078 TMEM132AQ24JP5 1023 aa10.74□□□□□ -0.69
KRT39-203ENST00000578078 PPARGC1BQ86YN6 1023 aaKnown RBP10.74□□□□□ -0.69
KRT39-203ENST00000578078 ATAD2BQ9ULI0 1458 aa10.73□□□□□ -0.69
KRT39-203ENST00000578078 BAZ1BQ9UIG0 1483 aaKnown RBP10.72□□□□□ -0.69
KRT39-203ENST00000578078 NPM1P06748 294 aaKnown RBP eCLIP10.71□□□□□ -0.69
KRT39-203ENST00000578078 NBR1Q14596 966 aa10.7□□□□□ -0.7
KRT39-203ENST00000578078 TSHZ2Q9NRE2 1034 aa10.69□□□□□ -0.7
KRT39-203ENST00000578078 PROM2Q8N271 834 aa10.68□□□□□ -0.7
KRT39-203ENST00000578078 HMGXB3Q12766 1538 aa10.65□□□□□ -0.7
KRT39-203ENST00000578078 SPDYE4A6NLX3 237 aa10.65□□□□□ -0.7
KRT39-203ENST00000578078 SPRYD3Q8NCJ5 442 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms