RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 SPDYE2BA6NHP3 402 aa16.13■□□□□ 0.17
CAPN3-219ENST00000569136 SPDYE6P0CI01 402 aa16.13■□□□□ 0.17
CAPN3-219ENST00000569136 SPDYE2Q495Y8 402 aa16.13■□□□□ 0.17
CAPN3-219ENST00000569136 ABCC8Q09428 1581 aa16.13■□□□□ 0.17
CAPN3-219ENST00000569136 URB2Q14146 1524 aaKnown RBP16.09■□□□□ 0.17
CAPN3-219ENST00000569136 RBM42Q9BTD8 480 aaKnown RBP16.06■□□□□ 0.16
CAPN3-219ENST00000569136 TOPBP1Q92547 1522 aa16.01■□□□□ 0.15
CAPN3-219ENST00000569136 IFT140Q96RY7 1462 aa15.99■□□□□ 0.15
CAPN3-219ENST00000569136 SSUH2Q9Y2M2 353 aa15.96■□□□□ 0.15
CAPN3-219ENST00000569136 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
CAPN3-219ENST00000569136 PRDM2Q13029 1718 aa15.94■□□□□ 0.14
CAPN3-219ENST00000569136 SOGA1O94964 1423 aa15.94■□□□□ 0.14
CAPN3-219ENST00000569136 POLA1P09884 1462 aaPredicted RBP15.88■□□□□ 0.13
CAPN3-219ENST00000569136 AKT1S1Q96B36 256 aa15.86■□□□□ 0.13
CAPN3-219ENST00000569136 ZNF608Q9ULD9 1512 aaPredicted RBP15.85■□□□□ 0.13
CAPN3-219ENST00000569136 CUX1P39880 1505 aa15.84■□□□□ 0.13
CAPN3-219ENST00000569136 PROM2Q8N271 834 aa15.84■□□□□ 0.13
CAPN3-219ENST00000569136 TDRD9Q8NDG6 1382 aaKnown RBP15.84■□□□□ 0.13
CAPN3-219ENST00000569136 WRNQ14191 1432 aaPredicted RBP eCLIP15.83■□□□□ 0.12
CAPN3-219ENST00000569136 AQRO60306 1485 aaKnown RBP eCLIP15.83■□□□□ 0.12
CAPN3-219ENST00000569136 RAD54L2Q9Y4B4 1467 aa15.83■□□□□ 0.12
CAPN3-219ENST00000569136 FGD5Q6ZNL6 1462 aa15.82■□□□□ 0.12
CAPN3-219ENST00000569136 FBXO3Q9UK99 471 aa15.77■□□□□ 0.12
CAPN3-219ENST00000569136 CHMP7Q8WUX9 453 aaPredicted RBP15.75■□□□□ 0.11
CAPN3-219ENST00000569136 TARBP1Q13395 1621 aaKnown RBP15.75■□□□□ 0.11
CAPN3-219ENST00000569136 REM2Q8IYK8 340 aaPredicted RBP15.72■□□□□ 0.11
CAPN3-219ENST00000569136 ABCA10Q8WWZ4 1543 aa15.71■□□□□ 0.11
CAPN3-219ENST00000569136 GRIN2BQ13224 1484 aa15.7■□□□□ 0.1
CAPN3-219ENST00000569136 CLEC11AQ9Y240 323 aa15.69■□□□□ 0.1
CAPN3-219ENST00000569136 GAPVD1Q14C86 1478 aa15.69■□□□□ 0.1
CAPN3-219ENST00000569136 WDR97A6NE52 1622 aa15.68■□□□□ 0.1
CAPN3-219ENST00000569136 TOP2BQ02880 1626 aa15.67■□□□□ 0.1
CAPN3-219ENST00000569136 SPDYE1Q8NFV5 336 aaPredicted RBP15.66■□□□□ 0.1
CAPN3-219ENST00000569136 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
CAPN3-219ENST00000569136 EIF4G3O43432 1585 aaKnown RBP15.65■□□□□ 0.1
CAPN3-219ENST00000569136 MAGI1Q96QZ7 1491 aaPredicted RBP15.64■□□□□ 0.09
CAPN3-219ENST00000569136 SYNJ1O43426 1573 aa15.61■□□□□ 0.09
CAPN3-219ENST00000569136 SNAPC4Q5SXM2 1469 aa15.6■□□□□ 0.09
CAPN3-219ENST00000569136 BIVM-ERCC5R4GMW8 1640 aa15.59■□□□□ 0.09
CAPN3-219ENST00000569136 SYNJ2O15056 1496 aa15.59■□□□□ 0.09
CAPN3-219ENST00000569136 TRIM41Q8WV44 630 aa15.58■□□□□ 0.08
CAPN3-219ENST00000569136 KIF27Q86VH2 1401 aa15.55■□□□□ 0.08
CAPN3-219ENST00000569136 PITPNM1O00562 1244 aa15.55■□□□□ 0.08
CAPN3-219ENST00000569136 FHAD1B1AJZ9 1412 aa15.54■□□□□ 0.08
CAPN3-219ENST00000569136 IGF1RP08069 1367 aa15.54■□□□□ 0.08
CAPN3-219ENST00000569136 VASPP50552 380 aaPredicted RBP15.53■□□□□ 0.08
CAPN3-219ENST00000569136 ERICH3Q5RHP9 1530 aa15.5■□□□□ 0.07
CAPN3-219ENST00000569136 PRR29P0C7W0 189 aa15.5■□□□□ 0.07
CAPN3-219ENST00000569136 ABCA5Q8WWZ7 1642 aa15.5■□□□□ 0.07
CAPN3-219ENST00000569136 CYB5RLQ6IPT4 315 aa15.48■□□□□ 0.07
CAPN3-219ENST00000569136 PLCD3Q8N3E9 789 aa15.47■□□□□ 0.07
CAPN3-219ENST00000569136 MIER1Q8N108 512 aa15.46■□□□□ 0.07
CAPN3-219ENST00000569136 CARMIL1Q5VZK9 1371 aa15.44■□□□□ 0.06
CAPN3-219ENST00000569136 GRIN2AQ12879 1464 aa15.44■□□□□ 0.06
CAPN3-219ENST00000569136 JPH4Q96JJ6 628 aa15.42■□□□□ 0.06
CAPN3-219ENST00000569136 PLEKHG5O94827 1062 aa15.41■□□□□ 0.06
CAPN3-219ENST00000569136 ARHGEF11O15085 1522 aa15.41■□□□□ 0.06
CAPN3-219ENST00000569136 NUP160Q12769 1436 aa15.41■□□□□ 0.06
CAPN3-219ENST00000569136 CHD1O14646 1710 aa15.38■□□□□ 0.05
CAPN3-219ENST00000569136 PBRM1Q86U86 1689 aa15.37■□□□□ 0.05
CAPN3-219ENST00000569136 ADAMTS12P58397 1594 aa15.36■□□□□ 0.05
CAPN3-219ENST00000569136 KLHL34Q8N239 644 aa15.36■□□□□ 0.05
CAPN3-219ENST00000569136 CLASP1Q7Z460 1538 aa15.36■□□□□ 0.05
CAPN3-219ENST00000569136 CHRDL2Q6WN34 429 aa15.35■□□□□ 0.05
CAPN3-219ENST00000569136 RIMBP3CA6NJZ7 1639 aa15.32■□□□□ 0.04
CAPN3-219ENST00000569136 RIMBP3BA6NNM3 1639 aa15.32■□□□□ 0.04
CAPN3-219ENST00000569136 RIMBP3Q9UFD9 1639 aa15.32■□□□□ 0.04
CAPN3-219ENST00000569136 IFNLR1Q8IU57 520 aaPredicted RBP15.31■□□□□ 0.04
CAPN3-219ENST00000569136 KIAA0586Q9BVV6 1533 aa15.3■□□□□ 0.04
CAPN3-219ENST00000569136 ARAP1Q96P48 1450 aa15.28■□□□□ 0.04
CAPN3-219ENST00000569136 PRG4Q92954 1404 aaPredicted RBP15.27■□□□□ 0.04
CAPN3-219ENST00000569136 RUSC2Q8N2Y8 1516 aa15.27■□□□□ 0.03
CAPN3-219ENST00000569136 RAPGEF2Q9Y4G8 1499 aa15.27■□□□□ 0.03
CAPN3-219ENST00000569136 CEP170Q5SW79 1584 aa15.26■□□□□ 0.03
CAPN3-219ENST00000569136 CREBZFQ9NS37 354 aa15.25■□□□□ 0.03
CAPN3-219ENST00000569136 CHADLQ6NUI6 762 aa15.24■□□□□ 0.03
CAPN3-219ENST00000569136 CUL7Q14999 1698 aa15.24■□□□□ 0.03
CAPN3-219ENST00000569136 ZBTB47Q9UFB7 747 aaPredicted RBP15.23■□□□□ 0.03
CAPN3-219ENST00000569136 EEA1Q15075 1411 aa15.23■□□□□ 0.03
CAPN3-219ENST00000569136 PRKAR2AP13861 404 aaKnown RBP15.2■□□□□ 0.02
CAPN3-219ENST00000569136 NPM1P06748 294 aaKnown RBP eCLIP15.19■□□□□ 0.02
CAPN3-219ENST00000569136 PRXQ9BXM0 1461 aa15.19■□□□□ 0.02
CAPN3-219ENST00000569136 CARMIL2Q6F5E8 1435 aa15.18■□□□□ 0.02
CAPN3-219ENST00000569136 FXR2P51116 673 aaKnown RBP eCLIP15.18■□□□□ 0.02
CAPN3-219ENST00000569136 FAM9AQ8IZU1 332 aaPredicted RBP15.17■□□□□ 0.02
CAPN3-219ENST00000569136 PIP4P2Q8N4L2 257 aa15.17■□□□□ 0.02
CAPN3-219ENST00000569136 SPOCK2Q92563 424 aa15.15■□□□□ 0.02
CAPN3-219ENST00000569136 PTPRGP23470 1445 aa15.15■□□□□ 0.02
CAPN3-219ENST00000569136 SHROOM2Q13796 1616 aa15.14■□□□□ 0.01
CAPN3-219ENST00000569136 TNIKQ9UKE5 1360 aa15.13■□□□□ 0.01
CAPN3-219ENST00000569136 ERCC6L2Q5T890 1561 aa15.11■□□□□ 0.01
CAPN3-219ENST00000569136 AMER1Q5JTC6 1135 aaPredicted RBP15.1■□□□□ 0.01
CAPN3-219ENST00000569136 TTBK1Q5TCY1 1321 aaPredicted RBP15.08■□□□□ 0
CAPN3-219ENST00000569136 IQGAP2Q13576 1575 aa15.06■□□□□ 0
CAPN3-219ENST00000569136 RTN4Q9NQC3 1192 aaKnown RBP15.05■□□□□ -0
CAPN3-219ENST00000569136 FARP1Q9Y4F1 1045 aaPredicted RBP15.05■□□□□ -0
CAPN3-219ENST00000569136 UGGT2Q9NYU1 1516 aa15.04■□□□□ -0
CAPN3-219ENST00000569136 GOLGA3Q08378 1498 aa15.04■□□□□ -0
CAPN3-219ENST00000569136 UBTFP17480 764 aaKnown RBP15.04■□□□□ -0
CAPN3-219ENST00000569136 MNX1P50219 401 aaPredicted RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms