RNA–Protein interactions for RNA: ENST00000569136.5

CAPN3-219, Transcript of calpain 3, humanhuman

TSL 2 BASIC

Gene CAPN3, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-219ENST00000569136 AEBP2Q6ZN18 517 aaPredicted RBP28.37■■■□□ 2.13
CAPN3-219ENST00000569136 CHIC1Q5VXU3 224 aa27.82■■■□□ 2.04
CAPN3-219ENST00000569136 PHF23Q9BUL5 403 aaPredicted RBP24.46■■□□□ 1.51
CAPN3-219ENST00000569136 SENP3Q9H4L4 574 aaPredicted RBP24.11■■□□□ 1.45
CAPN3-219ENST00000569136 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
CAPN3-219ENST00000569136 FOXD1Q16676 465 aa22.35■■□□□ 1.17
CAPN3-219ENST00000569136 NISCHQ9Y2I1 1504 aa21.97■■□□□ 1.11
CAPN3-219ENST00000569136 ADRA2BP18089 450 aa21.62■■□□□ 1.05
CAPN3-219ENST00000569136 PPP6R1Q9UPN7 881 aa21.57■■□□□ 1.04
CAPN3-219ENST00000569136 PIAS4Q8N2W9 510 aaPredicted RBP21.18■□□□□ 0.98
CAPN3-219ENST00000569136 MSH5O43196 834 aa20.59■□□□□ 0.89
CAPN3-219ENST00000569136 PPP4R3CPQ6ZMV5 832 aa20.01■□□□□ 0.79
CAPN3-219ENST00000569136 SCAF1Q9H7N4 1312 aaKnown RBP19.79■□□□□ 0.76
CAPN3-219ENST00000569136 KCNA4P22459 653 aa19.67■□□□□ 0.74
CAPN3-219ENST00000569136 MAPK8IP2Q13387 824 aaPredicted RBP19.58■□□□□ 0.72
CAPN3-219ENST00000569136 NCBP3Q53F19 620 aaKnown RBP19.55■□□□□ 0.72
CAPN3-219ENST00000569136 CNKSR2Q8WXI2 1034 aa19.41■□□□□ 0.7
CAPN3-219ENST00000569136 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
CAPN3-219ENST00000569136 DMRT2Q9Y5R5 561 aa19.23■□□□□ 0.67
CAPN3-219ENST00000569136 NPM3O75607 178 aaKnown RBP19.22■□□□□ 0.67
CAPN3-219ENST00000569136 ABCC9O60706 1549 aa19.16■□□□□ 0.66
CAPN3-219ENST00000569136 RNF216Q9NWF9 866 aaPredicted RBP18.97■□□□□ 0.63
CAPN3-219ENST00000569136 HOXD11P31277 338 aaPredicted RBP18.83■□□□□ 0.6
CAPN3-219ENST00000569136 SLC4A1APQ9BWU0 796 aaKnown RBP18.79■□□□□ 0.6
CAPN3-219ENST00000569136 DCAF8L1A6NGE4 600 aa18.61■□□□□ 0.57
CAPN3-219ENST00000569136 DCAF8L2P0C7V8 631 aa18.6■□□□□ 0.57
CAPN3-219ENST00000569136 POTEDQ86YR6 584 aa18.56■□□□□ 0.56
CAPN3-219ENST00000569136 EHMT2Q96KQ7 1210 aa18.45■□□□□ 0.54
CAPN3-219ENST00000569136 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
CAPN3-219ENST00000569136 NACADO15069 1562 aa18.4■□□□□ 0.54
CAPN3-219ENST00000569136 RB1CC1Q8TDY2 1594 aa18.39■□□□□ 0.53
CAPN3-219ENST00000569136 MYO15BQ96JP2 1530 aa18.33■□□□□ 0.52
CAPN3-219ENST00000569136 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
CAPN3-219ENST00000569136 DCAF1Q9Y4B6 1507 aa18.19■□□□□ 0.5
CAPN3-219ENST00000569136 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.12■□□□□ 0.49
CAPN3-219ENST00000569136 SLC4A2P04920 1241 aa18.08■□□□□ 0.48
CAPN3-219ENST00000569136 FOXD4L1Q9NU39 408 aa18.07■□□□□ 0.48
CAPN3-219ENST00000569136 ZBTB22O15209 634 aa18.05■□□□□ 0.48
CAPN3-219ENST00000569136 CSRNP3Q8WYN3 585 aa18.05■□□□□ 0.48
CAPN3-219ENST00000569136 PABPN1Q86U42 306 aaKnown RBP eCLIP18.04■□□□□ 0.48
CAPN3-219ENST00000569136 MYCNP04198 464 aaPredicted RBP17.77■□□□□ 0.44
CAPN3-219ENST00000569136 BICRAQ9NZM4 1560 aa17.76■□□□□ 0.43
CAPN3-219ENST00000569136 U3KPZ7 1027 aaPredicted RBP17.73■□□□□ 0.43
CAPN3-219ENST00000569136 SHROOM4Q9ULL8 1493 aa17.71■□□□□ 0.43
CAPN3-219ENST00000569136 SCRIBQ14160 1630 aa17.7■□□□□ 0.42
CAPN3-219ENST00000569136 UNC13AQ9UPW8 1703 aa17.67■□□□□ 0.42
CAPN3-219ENST00000569136 RNF39Q9H2S5 420 aa17.61■□□□□ 0.41
CAPN3-219ENST00000569136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.4
CAPN3-219ENST00000569136 HNRNPUL2Q1KMD3 747 aaKnown RBP17.58■□□□□ 0.4
CAPN3-219ENST00000569136 SAMD1Q6SPF0 538 aaPredicted RBP17.52■□□□□ 0.4
CAPN3-219ENST00000569136 C1QBPQ07021 282 aaKnown RBP17.42■□□□□ 0.38
CAPN3-219ENST00000569136 APLP2Q06481 763 aa17.4■□□□□ 0.38
CAPN3-219ENST00000569136 ATXN8OSP0DMR3 200 aa17.37■□□□□ 0.37
CAPN3-219ENST00000569136 EIF4G1Q04637 1599 aaKnown RBP17.34■□□□□ 0.37
CAPN3-219ENST00000569136 CECR2Q9BXF3 1484 aa17.28■□□□□ 0.36
CAPN3-219ENST00000569136 ATF5Q9Y2D1 282 aaPredicted RBP17.27■□□□□ 0.36
CAPN3-219ENST00000569136 CC2D2AQ9P2K1 1620 aa17.25■□□□□ 0.35
CAPN3-219ENST00000569136 CAPN15O75808 1086 aa17.25■□□□□ 0.35
CAPN3-219ENST00000569136 SPINK5Q9NQ38 1064 aaPredicted RBP17.24■□□□□ 0.35
CAPN3-219ENST00000569136 TRHP20396 242 aaPredicted RBP17.2■□□□□ 0.34
CAPN3-219ENST00000569136 CACNB1Q02641 598 aaPredicted RBP17.2■□□□□ 0.34
CAPN3-219ENST00000569136 ZNF219Q9P2Y4 722 aaPredicted RBP17.12■□□□□ 0.33
CAPN3-219ENST00000569136 NCAPD3P42695 1498 aa17.07■□□□□ 0.32
CAPN3-219ENST00000569136 ATAD2BQ9ULI0 1458 aa17.02■□□□□ 0.32
CAPN3-219ENST00000569136 BAZ1AQ9NRL2 1556 aaPredicted RBP17.02■□□□□ 0.31
CAPN3-219ENST00000569136 SMARCA2P51531 1590 aa16.96■□□□□ 0.31
CAPN3-219ENST00000569136 SMARCA4P51532 1647 aa16.95■□□□□ 0.3
CAPN3-219ENST00000569136 ABCB7O75027 752 aa16.93■□□□□ 0.3
CAPN3-219ENST00000569136 MROH2BQ7Z745 1585 aa16.89■□□□□ 0.29
CAPN3-219ENST00000569136 POLA2Q14181 598 aa16.88■□□□□ 0.29
CAPN3-219ENST00000569136 BAZ1BQ9UIG0 1483 aaKnown RBP16.85■□□□□ 0.29
CAPN3-219ENST00000569136 HMGXB3Q12766 1538 aa16.84■□□□□ 0.29
CAPN3-219ENST00000569136 PEG3Q9GZU2 1588 aa16.84■□□□□ 0.29
CAPN3-219ENST00000569136 DSG3P32926 999 aa16.81■□□□□ 0.28
CAPN3-219ENST00000569136 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
CAPN3-219ENST00000569136 FBLN2P98095 1184 aa16.62■□□□□ 0.25
CAPN3-219ENST00000569136 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
CAPN3-219ENST00000569136 WIZO95785 1651 aa16.6■□□□□ 0.25
CAPN3-219ENST00000569136 ZBTB12Q9Y330 459 aaPredicted RBP16.59■□□□□ 0.25
CAPN3-219ENST00000569136 ERCC6Q03468 1493 aa16.57■□□□□ 0.24
CAPN3-219ENST00000569136 PDS5BQ9NTI5 1447 aa16.55■□□□□ 0.24
CAPN3-219ENST00000569136 NESP48681 1621 aa16.54■□□□□ 0.24
CAPN3-219ENST00000569136 TOP2AP11388 1531 aaKnown RBP16.5■□□□□ 0.23
CAPN3-219ENST00000569136 MKRN4PQ13434 485 aaPredicted RBP16.5■□□□□ 0.23
CAPN3-219ENST00000569136 LAMC3Q9Y6N6 1575 aa16.49■□□□□ 0.23
CAPN3-219ENST00000569136 CFTRP13569 1480 aa16.42■□□□□ 0.22
CAPN3-219ENST00000569136 SUPT5HO00267 1087 aaKnown RBP16.42■□□□□ 0.22
CAPN3-219ENST00000569136 CUX2O14529 1486 aa16.42■□□□□ 0.22
CAPN3-219ENST00000569136 FKBP8Q14318 412 aa16.41■□□□□ 0.22
CAPN3-219ENST00000569136 CCDC88BA6NC98 1476 aa16.41■□□□□ 0.22
CAPN3-219ENST00000569136 FANCD2Q9BXW9 1451 aa16.31■□□□□ 0.2
CAPN3-219ENST00000569136 OSCARQ8IYS5 282 aa16.31■□□□□ 0.2
CAPN3-219ENST00000569136 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
CAPN3-219ENST00000569136 MRC2Q9UBG0 1479 aa16.27■□□□□ 0.19
CAPN3-219ENST00000569136 SPDYE4A6NLX3 237 aa16.26■□□□□ 0.19
CAPN3-219ENST00000569136 THOC2Q8NI27 1593 aaKnown RBP16.17■□□□□ 0.18
CAPN3-219ENST00000569136 WDR62O43379 1518 aa16.15■□□□□ 0.18
CAPN3-219ENST00000569136 KIF21AQ7Z4S6 1674 aa16.15■□□□□ 0.18
CAPN3-219ENST00000569136 ZNF692Q9BU19 519 aaPredicted RBP16.15■□□□□ 0.18
CAPN3-219ENST00000569136 DNAJC5Q9H3Z4 198 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms