RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 URB2Q14146 1524 aaKnown RBP15.67■□□□□ 0.1
UBFD1-202ENST00000563366 MRC2Q9UBG0 1479 aa15.66■□□□□ 0.1
UBFD1-202ENST00000563366 RUSC2Q8N2Y8 1516 aa15.64■□□□□ 0.09
UBFD1-202ENST00000563366 POLA1P09884 1462 aaPredicted RBP15.64■□□□□ 0.09
UBFD1-202ENST00000563366 WDR97A6NE52 1622 aa15.63■□□□□ 0.09
UBFD1-202ENST00000563366 GOLGA3Q08378 1498 aa15.63■□□□□ 0.09
UBFD1-202ENST00000563366 LOC105371045A0A1W2PR82 267 aa15.62■□□□□ 0.09
UBFD1-202ENST00000563366 ABCA10Q8WWZ4 1543 aa15.61■□□□□ 0.09
UBFD1-202ENST00000563366 ERCC6Q03468 1493 aa15.6■□□□□ 0.09
UBFD1-202ENST00000563366 WDR62O43379 1518 aa15.6■□□□□ 0.09
UBFD1-202ENST00000563366 ERICH3Q5RHP9 1530 aa15.6■□□□□ 0.09
UBFD1-202ENST00000563366 CUX2O14529 1486 aa15.59■□□□□ 0.09
UBFD1-202ENST00000563366 POLA2Q14181 598 aa15.57■□□□□ 0.08
UBFD1-202ENST00000563366 THOC2Q8NI27 1593 aaKnown RBP15.55■□□□□ 0.08
UBFD1-202ENST00000563366 CUL7Q14999 1698 aa15.53■□□□□ 0.08
UBFD1-202ENST00000563366 TARBP1Q13395 1621 aaKnown RBP15.53■□□□□ 0.08
UBFD1-202ENST00000563366 PRXQ9BXM0 1461 aa15.52■□□□□ 0.08
UBFD1-202ENST00000563366 TNIKQ9UKE5 1360 aa15.52■□□□□ 0.08
UBFD1-202ENST00000563366 ABCA5Q8WWZ7 1642 aa15.52■□□□□ 0.08
UBFD1-202ENST00000563366 FBLN2P98095 1184 aa15.51■□□□□ 0.07
UBFD1-202ENST00000563366 RAD54L2Q9Y4B4 1467 aa15.51■□□□□ 0.07
UBFD1-202ENST00000563366 IFT140Q96RY7 1462 aa15.47■□□□□ 0.07
UBFD1-202ENST00000563366 RAPGEF2Q9Y4G8 1499 aa15.46■□□□□ 0.07
UBFD1-202ENST00000563366 ABCB7O75027 752 aa15.46■□□□□ 0.07
UBFD1-202ENST00000563366 MKRN4PQ13434 485 aaPredicted RBP15.46■□□□□ 0.07
UBFD1-202ENST00000563366 UBTFP17480 764 aaKnown RBP15.45■□□□□ 0.06
UBFD1-202ENST00000563366 PBRM1Q86U86 1689 aa15.44■□□□□ 0.06
UBFD1-202ENST00000563366 IGF1RP08069 1367 aa15.44■□□□□ 0.06
UBFD1-202ENST00000563366 GAPVD1Q14C86 1478 aa15.43■□□□□ 0.06
UBFD1-202ENST00000563366 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
UBFD1-202ENST00000563366 CARMIL1Q5VZK9 1371 aa15.39■□□□□ 0.05
UBFD1-202ENST00000563366 ZBTB12Q9Y330 459 aaPredicted RBP15.38■□□□□ 0.05
UBFD1-202ENST00000563366 CTTNBP2Q8WZ74 1663 aa15.36■□□□□ 0.05
UBFD1-202ENST00000563366 SPDYE4A6NLX3 237 aa15.36■□□□□ 0.05
UBFD1-202ENST00000563366 TDRD9Q8NDG6 1382 aaKnown RBP15.35■□□□□ 0.05
UBFD1-202ENST00000563366 GRIN2BQ13224 1484 aa15.34■□□□□ 0.05
UBFD1-202ENST00000563366 EIF4G3O43432 1585 aaKnown RBP15.34■□□□□ 0.05
UBFD1-202ENST00000563366 CLIP1P30622 1438 aa15.33■□□□□ 0.04
UBFD1-202ENST00000563366 DSG3P32926 999 aa15.32■□□□□ 0.04
UBFD1-202ENST00000563366 ADAMTS12P58397 1594 aa15.32■□□□□ 0.04
UBFD1-202ENST00000563366 FHAD1B1AJZ9 1412 aa15.28■□□□□ 0.04
UBFD1-202ENST00000563366 AQRO60306 1485 aaKnown RBP eCLIP15.27■□□□□ 0.032e-6■■■■■ 45.3
UBFD1-202ENST00000563366 CACNB1Q02641 598 aaPredicted RBP15.26■□□□□ 0.03
UBFD1-202ENST00000563366 ZNF608Q9ULD9 1512 aaPredicted RBP15.26■□□□□ 0.03
UBFD1-202ENST00000563366 MAGI1Q96QZ7 1491 aaPredicted RBP15.26■□□□□ 0.03
UBFD1-202ENST00000563366 EFCAB5A4FU69 1503 aa15.23■□□□□ 0.03
UBFD1-202ENST00000563366 VPS8Q8N3P4 1428 aa15.21■□□□□ 0.03
UBFD1-202ENST00000563366 SNAPC4Q5SXM2 1469 aa15.2■□□□□ 0.02
UBFD1-202ENST00000563366 SYNJ2O15056 1496 aa15.17■□□□□ 0.02
UBFD1-202ENST00000563366 ARHGAP35Q9NRY4 1499 aa15.16■□□□□ 0.02
UBFD1-202ENST00000563366 IQGAP2Q13576 1575 aa15.15■□□□□ 0.02
UBFD1-202ENST00000563366 ARAP1Q96P48 1450 aa15.15■□□□□ 0.02
UBFD1-202ENST00000563366 AMER1Q5JTC6 1135 aaPredicted RBP15.15■□□□□ 0.02
UBFD1-202ENST00000563366 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
UBFD1-202ENST00000563366 FBXO3Q9UK99 471 aa15.13■□□□□ 0.01
UBFD1-202ENST00000563366 SAMD9Q5K651 1589 aa15.12■□□□□ 0.01
UBFD1-202ENST00000563366 PROM2Q8N271 834 aa15.12■□□□□ 0.01
UBFD1-202ENST00000563366 KIAA0586Q9BVV6 1533 aa15.08■□□□□ 0.01
UBFD1-202ENST00000563366 RANGAP1P46060 587 aaPredicted RBP15.08■□□□□ 0
UBFD1-202ENST00000563366 RTN4Q9NQC3 1192 aaKnown RBP15.08■□□□□ 0
UBFD1-202ENST00000563366 TRIM26Q12899 539 aaPredicted RBP15.06■□□□□ 0
UBFD1-202ENST00000563366 UGGT2Q9NYU1 1516 aa15.06■□□□□ 0
UBFD1-202ENST00000563366 CHMP7Q8WUX9 453 aaPredicted RBP15.05■□□□□ -0
UBFD1-202ENST00000563366 FMN1Q68DA7 1419 aa15.05■□□□□ -0
UBFD1-202ENST00000563366 OSCARQ8IYS5 282 aa15.04■□□□□ -0
UBFD1-202ENST00000563366 CHD1O14646 1710 aa15.03■□□□□ -0
UBFD1-202ENST00000563366 CEP170Q5SW79 1584 aa15.03■□□□□ -0
UBFD1-202ENST00000563366 MAP3K1Q13233 1512 aa15.02■□□□□ -0
UBFD1-202ENST00000563366 FYCO1Q9BQS8 1478 aa15.02■□□□□ -0
UBFD1-202ENST00000563366 NUP160Q12769 1436 aa15.02■□□□□ -0
UBFD1-202ENST00000563366 CFAP43Q8NDM7 1665 aa15□□□□□ -0.01
UBFD1-202ENST00000563366 PCF11O94913 1555 aaKnown RBP14.99□□□□□ -0.01
UBFD1-202ENST00000563366 ZNF692Q9BU19 519 aaPredicted RBP14.99□□□□□ -0.01
UBFD1-202ENST00000563366 FHOD3Q2V2M9 1422 aa14.99□□□□□ -0.01
UBFD1-202ENST00000563366 SPDYE2BA6NHP3 402 aa14.98□□□□□ -0.01
UBFD1-202ENST00000563366 SPDYE6P0CI01 402 aa14.98□□□□□ -0.01
UBFD1-202ENST00000563366 SPDYE2Q495Y8 402 aa14.98□□□□□ -0.01
UBFD1-202ENST00000563366 KIAA0556O60303 1618 aa14.98□□□□□ -0.01
UBFD1-202ENST00000563366 TIAM1Q13009 1591 aa14.96□□□□□ -0.01
UBFD1-202ENST00000563366 CASKIN1Q8WXD9 1431 aa14.96□□□□□ -0.01
UBFD1-202ENST00000563366 PCGF6Q9BYE7 350 aa14.94□□□□□ -0.02
UBFD1-202ENST00000563366 HECW1Q76N89 1606 aa14.94□□□□□ -0.02
UBFD1-202ENST00000563366 CARMIL2Q6F5E8 1435 aa14.93□□□□□ -0.02
UBFD1-202ENST00000563366 DISP1Q96F81 1524 aa14.92□□□□□ -0.02
UBFD1-202ENST00000563366 CCDC18Q5T9S5 1454 aa14.89□□□□□ -0.03
UBFD1-202ENST00000563366 VASPP50552 380 aaPredicted RBP14.89□□□□□ -0.03
UBFD1-202ENST00000563366 P3H3Q8IVL6 736 aa14.89□□□□□ -0.03
UBFD1-202ENST00000563366 SSUH2Q9Y2M2 353 aa14.89□□□□□ -0.03
UBFD1-202ENST00000563366 SHROOM2Q13796 1616 aa14.88□□□□□ -0.03
UBFD1-202ENST00000563366 LRRC9Q6ZRR7 1453 aa14.85□□□□□ -0.03
UBFD1-202ENST00000563366 PPARGC1BQ86YN6 1023 aaKnown RBP14.85□□□□□ -0.03
UBFD1-202ENST00000563366 LRRIQ1Q96JM4 1722 aa14.85□□□□□ -0.03
UBFD1-202ENST00000563366 RAPGEF6Q8TEU7 1601 aa14.84□□□□□ -0.03
UBFD1-202ENST00000563366 CLASP1Q7Z460 1538 aa14.83□□□□□ -0.04
UBFD1-202ENST00000563366 JPH4Q96JJ6 628 aa14.83□□□□□ -0.04
UBFD1-202ENST00000563366 EHBP1L1Q8N3D4 1523 aa14.82□□□□□ -0.04
UBFD1-202ENST00000563366 ATP1B4Q9UN42 357 aaPredicted RBP14.79□□□□□ -0.04
UBFD1-202ENST00000563366 SUPT6HQ7KZ85 1726 aaKnown RBP14.78□□□□□ -0.04
UBFD1-202ENST00000563366 EPRSP07814 1512 aaKnown RBP14.78□□□□□ -0.04
UBFD1-202ENST00000563366 PRG4Q92954 1404 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms