RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 AEBP2Q6ZN18 517 aaPredicted RBP25.9■■□□□ 1.74
UBFD1-202ENST00000563366 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
UBFD1-202ENST00000563366 PHF23Q9BUL5 403 aaPredicted RBP22.66■■□□□ 1.22
UBFD1-202ENST00000563366 NISCHQ9Y2I1 1504 aa22.01■■□□□ 1.11
UBFD1-202ENST00000563366 SENP3Q9H4L4 574 aaPredicted RBP21.97■■□□□ 1.11
UBFD1-202ENST00000563366 PLPPR3Q6T4P5 718 aa21.12■□□□□ 0.97
UBFD1-202ENST00000563366 FOXD1Q16676 465 aa20.3■□□□□ 0.84
UBFD1-202ENST00000563366 ADRA2BP18089 450 aa19.88■□□□□ 0.77
UBFD1-202ENST00000563366 PPP6R1Q9UPN7 881 aa19.85■□□□□ 0.77
UBFD1-202ENST00000563366 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
UBFD1-202ENST00000563366 PIAS4Q8N2W9 510 aaPredicted RBP19.3■□□□□ 0.68
UBFD1-202ENST00000563366 KCNA4P22459 653 aa18.69■□□□□ 0.58
UBFD1-202ENST00000563366 PPP4R3CPQ6ZMV5 832 aa18.66■□□□□ 0.58
UBFD1-202ENST00000563366 MSH5O43196 834 aa18.6■□□□□ 0.57
UBFD1-202ENST00000563366 ZCCHC6Q5VYS8 1495 aaKnown RBP18.5■□□□□ 0.55
UBFD1-202ENST00000563366 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.52
UBFD1-202ENST00000563366 DCAF1Q9Y4B6 1507 aa18.31■□□□□ 0.52
UBFD1-202ENST00000563366 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
UBFD1-202ENST00000563366 MYO15BQ96JP2 1530 aa18.13■□□□□ 0.49
UBFD1-202ENST00000563366 ABCC9O60706 1549 aa18.09■□□□□ 0.49
UBFD1-202ENST00000563366 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
UBFD1-202ENST00000563366 NPM3O75607 178 aaKnown RBP18.02■□□□□ 0.48
UBFD1-202ENST00000563366 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
UBFD1-202ENST00000563366 NACADO15069 1562 aa17.99■□□□□ 0.47
UBFD1-202ENST00000563366 SLC4A1APQ9BWU0 796 aaKnown RBP17.91■□□□□ 0.46
UBFD1-202ENST00000563366 MAPK8IP2Q13387 824 aaPredicted RBP17.9■□□□□ 0.46
UBFD1-202ENST00000563366 EHMT2Q96KQ7 1210 aa17.9■□□□□ 0.46
UBFD1-202ENST00000563366 RB1CC1Q8TDY2 1594 aa17.84■□□□□ 0.45
UBFD1-202ENST00000563366 SHROOM4Q9ULL8 1493 aa17.74■□□□□ 0.43
UBFD1-202ENST00000563366 SCRIBQ14160 1630 aa17.63■□□□□ 0.41
UBFD1-202ENST00000563366 DMRT2Q9Y5R5 561 aa17.59■□□□□ 0.41
UBFD1-202ENST00000563366 RNF216Q9NWF9 866 aaPredicted RBP17.58■□□□□ 0.4
UBFD1-202ENST00000563366 UNC13AQ9UPW8 1703 aa17.46■□□□□ 0.39
UBFD1-202ENST00000563366 CSRNP3Q8WYN3 585 aa17.45■□□□□ 0.38
UBFD1-202ENST00000563366 DNAJC5BQ9UF47 199 aa17.39■□□□□ 0.37
UBFD1-202ENST00000563366 HOXD11P31277 338 aaPredicted RBP17.38■□□□□ 0.37
UBFD1-202ENST00000563366 BICRAQ9NZM4 1560 aa17.19■□□□□ 0.34
UBFD1-202ENST00000563366 ZBTB22O15209 634 aa17.18■□□□□ 0.34
UBFD1-202ENST00000563366 FOXD4L1Q9NU39 408 aa17.11■□□□□ 0.33
UBFD1-202ENST00000563366 BAZ1AQ9NRL2 1556 aaPredicted RBP17.07■□□□□ 0.32
UBFD1-202ENST00000563366 SUPT5HO00267 1087 aaKnown RBP17.06■□□□□ 0.32
UBFD1-202ENST00000563366 RSF1Q96T23 1441 aaPredicted RBP16.99■□□□□ 0.31
UBFD1-202ENST00000563366 CECR2Q9BXF3 1484 aa16.99■□□□□ 0.31
UBFD1-202ENST00000563366 SMARCA4P51532 1647 aa16.96■□□□□ 0.31
UBFD1-202ENST00000563366 PABPN1Q86U42 306 aaKnown RBP eCLIP16.95■□□□□ 0.3
UBFD1-202ENST00000563366 MROH2BQ7Z745 1585 aa16.94■□□□□ 0.3
UBFD1-202ENST00000563366 SLC4A2P04920 1241 aa16.88■□□□□ 0.29
UBFD1-202ENST00000563366 DCAF8L1A6NGE4 600 aa16.86■□□□□ 0.29
UBFD1-202ENST00000563366 WIZO95785 1651 aa16.84■□□□□ 0.29
UBFD1-202ENST00000563366 PEG3Q9GZU2 1588 aa16.81■□□□□ 0.28
UBFD1-202ENST00000563366 SMARCA2P51531 1590 aa16.73■□□□□ 0.27
UBFD1-202ENST00000563366 TOP2AP11388 1531 aaKnown RBP16.73■□□□□ 0.27
UBFD1-202ENST00000563366 EIF4G1Q04637 1599 aaKnown RBP16.72■□□□□ 0.27
UBFD1-202ENST00000563366 MYCNP04198 464 aaPredicted RBP16.67■□□□□ 0.26
UBFD1-202ENST00000563366 ATAD2BQ9ULI0 1458 aa16.62■□□□□ 0.25
UBFD1-202ENST00000563366 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.25
UBFD1-202ENST00000563366 HMGXB3Q12766 1538 aa16.59■□□□□ 0.25
UBFD1-202ENST00000563366 BAZ1BQ9UIG0 1483 aaKnown RBP16.58■□□□□ 0.24
UBFD1-202ENST00000563366 NCAPD3P42695 1498 aa16.53■□□□□ 0.24
UBFD1-202ENST00000563366 ATXN8OSP0DMR3 200 aa16.47■□□□□ 0.23
UBFD1-202ENST00000563366 CC2D2AQ9P2K1 1620 aa16.46■□□□□ 0.23
UBFD1-202ENST00000563366 CCDC88BA6NC98 1476 aa16.45■□□□□ 0.22
UBFD1-202ENST00000563366 U3KPZ7 1027 aaPredicted RBP16.35■□□□□ 0.21
UBFD1-202ENST00000563366 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.34■□□□□ 0.21
UBFD1-202ENST00000563366 HNRNPUL2Q1KMD3 747 aaKnown RBP16.34■□□□□ 0.21
UBFD1-202ENST00000563366 SAMD1Q6SPF0 538 aaPredicted RBP16.29■□□□□ 0.2
UBFD1-202ENST00000563366 PRDM2Q13029 1718 aa16.25■□□□□ 0.19
UBFD1-202ENST00000563366 POTEDQ86YR6 584 aa16.15■□□□□ 0.18
UBFD1-202ENST00000563366 ATF5Q9Y2D1 282 aaPredicted RBP16.14■□□□□ 0.17
UBFD1-202ENST00000563366 CFTRP13569 1480 aa16.14■□□□□ 0.17
UBFD1-202ENST00000563366 TRIM41Q8WV44 630 aa16.13■□□□□ 0.17
UBFD1-202ENST00000563366 APLP2Q06481 763 aa16.09■□□□□ 0.17
UBFD1-202ENST00000563366 ABCC8Q09428 1581 aa16.09■□□□□ 0.17
UBFD1-202ENST00000563366 CADPSQ9ULU8 1353 aa16.06■□□□□ 0.16
UBFD1-202ENST00000563366 LAMC3Q9Y6N6 1575 aa16.05■□□□□ 0.16
UBFD1-202ENST00000563366 WRNQ14191 1432 aaPredicted RBP eCLIP16.05■□□□□ 0.16
UBFD1-202ENST00000563366 BIVM-ERCC5R4GMW8 1640 aa16■□□□□ 0.15
UBFD1-202ENST00000563366 TOP2BQ02880 1626 aa15.99■□□□□ 0.15
UBFD1-202ENST00000563366 SYNJ1O43426 1573 aa15.97■□□□□ 0.15
UBFD1-202ENST00000563366 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
UBFD1-202ENST00000563366 EEA1Q15075 1411 aa15.91■□□□□ 0.14
UBFD1-202ENST00000563366 FANCD2Q9BXW9 1451 aa15.91■□□□□ 0.14
UBFD1-202ENST00000563366 PDS5BQ9NTI5 1447 aa15.87■□□□□ 0.13
UBFD1-202ENST00000563366 ZNF219Q9P2Y4 722 aaPredicted RBP15.87■□□□□ 0.13
UBFD1-202ENST00000563366 CUX1P39880 1505 aa15.86■□□□□ 0.13
UBFD1-202ENST00000563366 CEP164Q9UPV0 1460 aa15.85■□□□□ 0.13
UBFD1-202ENST00000563366 NESP48681 1621 aa15.85■□□□□ 0.13
UBFD1-202ENST00000563366 DNMBPQ6XZF7 1577 aa15.83■□□□□ 0.12
UBFD1-202ENST00000563366 KIF21AQ7Z4S6 1674 aa15.8■□□□□ 0.12
UBFD1-202ENST00000563366 C1QBPQ07021 282 aaKnown RBP15.8■□□□□ 0.12
UBFD1-202ENST00000563366 FKBP8Q14318 412 aa15.79■□□□□ 0.12
UBFD1-202ENST00000563366 SPINK5Q9NQ38 1064 aaPredicted RBP15.77■□□□□ 0.12
UBFD1-202ENST00000563366 TRHP20396 242 aaPredicted RBP15.76■□□□□ 0.11
UBFD1-202ENST00000563366 SOGA1O94964 1423 aa15.74■□□□□ 0.11
UBFD1-202ENST00000563366 CAPN15O75808 1086 aa15.73■□□□□ 0.11
UBFD1-202ENST00000563366 TOPBP1Q92547 1522 aa15.73■□□□□ 0.11
UBFD1-202ENST00000563366 FAM9AQ8IZU1 332 aaPredicted RBP15.72■□□□□ 0.11
UBFD1-202ENST00000563366 FGD5Q6ZNL6 1462 aa15.71■□□□□ 0.1
UBFD1-202ENST00000563366 KIF21BO75037 1637 aa15.69■□□□□ 0.1
UBFD1-202ENST00000563366 KIF27Q86VH2 1401 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms