RNA–Protein interactions for RNA: ENST00000562601.5

CDH13-206, Transcript of cadherin 13, humanhuman

TSL 4

Gene CDH13, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-206ENST00000562601 PRR29P0C7W0 189 aa10.7□□□□□ -0.7
CDH13-206ENST00000562601 RSF1Q96T23 1441 aaPredicted RBP10.68□□□□□ -0.7
CDH13-206ENST00000562601 EVX2Q03828 476 aa10.62□□□□□ -0.71
CDH13-206ENST00000562601 NESP48681 1621 aa10.62□□□□□ -0.71
CDH13-206ENST00000562601 HAX1O00165 279 aa10.6□□□□□ -0.71
CDH13-206ENST00000562601 PLEKHG5O94827 1062 aa10.58□□□□□ -0.72
CDH13-206ENST00000562601 TOP2AP11388 1531 aaKnown RBP10.56□□□□□ -0.72
CDH13-206ENST00000562601 ERCC6Q03468 1493 aa10.55□□□□□ -0.72
CDH13-206ENST00000562601 PRKAR2AP13861 404 aaKnown RBP10.54□□□□□ -0.72
CDH13-206ENST00000562601 MIER1Q8N108 512 aa10.52□□□□□ -0.73
CDH13-206ENST00000562601 PLCD3Q8N3E9 789 aa10.52□□□□□ -0.73
CDH13-206ENST00000562601 VASPP50552 380 aaPredicted RBP10.51□□□□□ -0.73
CDH13-206ENST00000562601 LAMC3Q9Y6N6 1575 aa10.51□□□□□ -0.73
CDH13-206ENST00000562601 CREBZFQ9NS37 354 aa10.5□□□□□ -0.73
CDH13-206ENST00000562601 SUPT5HO00267 1087 aaKnown RBP10.49□□□□□ -0.73
CDH13-206ENST00000562601 KIF21AQ7Z4S6 1674 aa10.49□□□□□ -0.73
CDH13-206ENST00000562601 CADPSQ9ULU8 1353 aa10.49□□□□□ -0.73
CDH13-206ENST00000562601 CHADLQ6NUI6 762 aa10.48□□□□□ -0.73
CDH13-206ENST00000562601 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
CDH13-206ENST00000562601 C19orf67A6NJJ6 358 aa10.47□□□□□ -0.73
CDH13-206ENST00000562601 CCDC88BA6NC98 1476 aa10.47□□□□□ -0.73
CDH13-206ENST00000562601 PDS5BQ9NTI5 1447 aa10.44□□□□□ -0.74
CDH13-206ENST00000562601 NPM1P06748 294 aaKnown RBP eCLIP10.43□□□□□ -0.74
CDH13-206ENST00000562601 FARP1Q9Y4F1 1045 aaPredicted RBP10.42□□□□□ -0.74
CDH13-206ENST00000562601 CFTRP13569 1480 aa10.42□□□□□ -0.74
CDH13-206ENST00000562601 THOC2Q8NI27 1593 aaKnown RBP10.41□□□□□ -0.74
CDH13-206ENST00000562601 CUX2O14529 1486 aa10.38□□□□□ -0.75
CDH13-206ENST00000562601 FANCD2Q9BXW9 1451 aa10.38□□□□□ -0.75
CDH13-206ENST00000562601 PRDM2Q13029 1718 aa10.37□□□□□ -0.75
CDH13-206ENST00000562601 KLHL34Q8N239 644 aa10.37□□□□□ -0.75
CDH13-206ENST00000562601 MNX1P50219 401 aaPredicted RBP10.36□□□□□ -0.75
CDH13-206ENST00000562601 CEP164Q9UPV0 1460 aa10.36□□□□□ -0.75
CDH13-206ENST00000562601 MRC2Q9UBG0 1479 aa10.35□□□□□ -0.75
CDH13-206ENST00000562601 GABBR2O75899 941 aa10.31□□□□□ -0.76
CDH13-206ENST00000562601 IFNLR1Q8IU57 520 aaPredicted RBP10.31□□□□□ -0.76
CDH13-206ENST00000562601 WDR62O43379 1518 aa10.3□□□□□ -0.76
CDH13-206ENST00000562601 URB2Q14146 1524 aaKnown RBP10.29□□□□□ -0.76
CDH13-206ENST00000562601 PAK3O75914 559 aaPredicted RBP10.29□□□□□ -0.76
CDH13-206ENST00000562601 SPOCK2Q92563 424 aa10.28□□□□□ -0.76
CDH13-206ENST00000562601 CD44P16070 742 aaKnown RBP10.25□□□□□ -0.77
CDH13-206ENST00000562601 NUBP1P53384 320 aa10.22□□□□□ -0.77
CDH13-206ENST00000562601 FAM212AQ96EL1 285 aa10.22□□□□□ -0.77
CDH13-206ENST00000562601 TOPBP1Q92547 1522 aa10.22□□□□□ -0.77
CDH13-206ENST00000562601 DNMBPQ6XZF7 1577 aa10.19□□□□□ -0.78
CDH13-206ENST00000562601 GSE1Q14687 1217 aa10.18□□□□□ -0.78
CDH13-206ENST00000562601 RASEFQ8IZ41 740 aa10.18□□□□□ -0.78
CDH13-206ENST00000562601 POTEIP0CG38 1075 aa10.17□□□□□ -0.78
CDH13-206ENST00000562601 ZRANB1Q9UGI0 708 aa10.17□□□□□ -0.78
CDH13-206ENST00000562601 ABCC8Q09428 1581 aa10.17□□□□□ -0.78
CDH13-206ENST00000562601 TSPYL2Q9H2G4 693 aaPredicted RBP10.16□□□□□ -0.78
CDH13-206ENST00000562601 DCAF8Q5TAQ9 597 aa10.15□□□□□ -0.78
CDH13-206ENST00000562601 CUX1P39880 1505 aa10.15□□□□□ -0.78
CDH13-206ENST00000562601 ZNF608Q9ULD9 1512 aaPredicted RBP10.14□□□□□ -0.79
CDH13-206ENST00000562601 IFT140Q96RY7 1462 aa10.13□□□□□ -0.79
CDH13-206ENST00000562601 RAD54L2Q9Y4B4 1467 aa10.13□□□□□ -0.79
CDH13-206ENST00000562601 POLA1P09884 1462 aaPredicted RBP10.12□□□□□ -0.79
CDH13-206ENST00000562601 CLCN6P51797 869 aa10.12□□□□□ -0.79
CDH13-206ENST00000562601 ZNF579Q8NAF0 562 aaKnown RBP10.12□□□□□ -0.79
CDH13-206ENST00000562601 DNAJC5Q9H3Z4 198 aa10.12□□□□□ -0.79
CDH13-206ENST00000562601 TARBP1Q13395 1621 aaKnown RBP10.11□□□□□ -0.79
CDH13-206ENST00000562601 FGD5Q6ZNL6 1462 aa10.11□□□□□ -0.79
CDH13-206ENST00000562601 CIZ1Q9ULV3 898 aaPredicted RBP10.11□□□□□ -0.79
CDH13-206ENST00000562601 SOGA1O94964 1423 aa10.09□□□□□ -0.79
CDH13-206ENST00000562601 LHX8Q68G74 356 aa10.09□□□□□ -0.79
CDH13-206ENST00000562601 TRIM41Q8WV44 630 aa10.09□□□□□ -0.79
CDH13-206ENST00000562601 CCDC61Q9Y6R9 512 aa10.09□□□□□ -0.79
CDH13-206ENST00000562601 AQRO60306 1485 aaKnown RBP eCLIP10.09□□□□□ -0.79
CDH13-206ENST00000562601 EIF4G3O43432 1585 aaKnown RBP10.08□□□□□ -0.8
CDH13-206ENST00000562601 SYNJ1O43426 1573 aa10.07□□□□□ -0.8
CDH13-206ENST00000562601 TDRD9Q8NDG6 1382 aaKnown RBP10.07□□□□□ -0.8
CDH13-206ENST00000562601 WRNQ14191 1432 aaPredicted RBP eCLIP10.06□□□□□ -0.8
CDH13-206ENST00000562601 TOP2BQ02880 1626 aa10.04□□□□□ -0.8
CDH13-206ENST00000562601 BIVM-ERCC5R4GMW8 1640 aa10.04□□□□□ -0.8
CDH13-206ENST00000562601 PHF12Q96QT6 1004 aa10.03□□□□□ -0.8
CDH13-206ENST00000562601 WDR97A6NE52 1622 aa10.03□□□□□ -0.8
CDH13-206ENST00000562601 SGIP1Q9BQI5 828 aa10.01□□□□□ -0.81
CDH13-206ENST00000562601 PYGBP11216 843 aa10□□□□□ -0.81
CDH13-206ENST00000562601 CHRM1P11229 460 aaPredicted RBP10□□□□□ -0.81
CDH13-206ENST00000562601 KIF12Q96FN5 646 aa10□□□□□ -0.81
CDH13-206ENST00000562601 CHD1O14646 1710 aa9.99□□□□□ -0.81
CDH13-206ENST00000562601 PBRM1Q86U86 1689 aa9.99□□□□□ -0.81
CDH13-206ENST00000562601 ABCA10Q8WWZ4 1543 aa9.98□□□□□ -0.81
CDH13-206ENST00000562601 AMER1Q5JTC6 1135 aaPredicted RBP9.98□□□□□ -0.81
CDH13-206ENST00000562601 GAPVD1Q14C86 1478 aa9.98□□□□□ -0.81
CDH13-206ENST00000562601 SNAPC4Q5SXM2 1469 aa9.98□□□□□ -0.81
CDH13-206ENST00000562601 PCDHB13Q9Y5F0 798 aa9.96□□□□□ -0.82
CDH13-206ENST00000562601 ABCA5Q8WWZ7 1642 aa9.96□□□□□ -0.82
CDH13-206ENST00000562601 MAP3K13O43283 966 aa9.95□□□□□ -0.82
CDH13-206ENST00000562601 ECM2O94769 699 aaPredicted RBP9.95□□□□□ -0.82
CDH13-206ENST00000562601 GRIN2BQ13224 1484 aa9.95□□□□□ -0.82
CDH13-206ENST00000562601 GALR2O43603 387 aaPredicted RBP9.94□□□□□ -0.82
CDH13-206ENST00000562601 PKD2Q13563 968 aa9.94□□□□□ -0.82
CDH13-206ENST00000562601 ZNF467Q7Z7K2 595 aaPredicted RBP9.94□□□□□ -0.82
CDH13-206ENST00000562601 CHMP7Q8WUX9 453 aaPredicted RBP9.93□□□□□ -0.82
CDH13-206ENST00000562601 MS4A3Q96HJ5 214 aa9.93□□□□□ -0.82
CDH13-206ENST00000562601 MAGI1Q96QZ7 1491 aaPredicted RBP9.91□□□□□ -0.82
CDH13-206ENST00000562601 TAOK2Q9UL54 1235 aa9.9□□□□□ -0.82
CDH13-206ENST00000562601 SYNJ2O15056 1496 aa9.89□□□□□ -0.83
CDH13-206ENST00000562601 IFNL1Q8IU54 200 aa9.88□□□□□ -0.83
CDH13-206ENST00000562601 DCBLD2Q96PD2 775 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms