RNA–Protein interactions for RNA: ENST00000562601.5

CDH13-206, Transcript of cadherin 13, humanhuman

TSL 4

Gene CDH13, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-206ENST00000562601 AEBP2Q6ZN18 517 aaPredicted RBP20.11■□□□□ 0.81
CDH13-206ENST00000562601 CHIC1Q5VXU3 224 aa19.27■□□□□ 0.68
CDH13-206ENST00000562601 SENP3Q9H4L4 574 aaPredicted RBP17.05■□□□□ 0.32
CDH13-206ENST00000562601 PHF23Q9BUL5 403 aaPredicted RBP16.86■□□□□ 0.29
CDH13-206ENST00000562601 FOXD1Q16676 465 aa15.98■□□□□ 0.15
CDH13-206ENST00000562601 PLPPR3Q6T4P5 718 aa15.68■□□□□ 0.1
CDH13-206ENST00000562601 MSH5O43196 834 aa14.92□□□□□ -0.02
CDH13-206ENST00000562601 ADRA2BP18089 450 aa14.89□□□□□ -0.03
CDH13-206ENST00000562601 PPP6R1Q9UPN7 881 aa14.88□□□□□ -0.03
CDH13-206ENST00000562601 POTEDQ86YR6 584 aa14.85□□□□□ -0.03
CDH13-206ENST00000562601 PIAS4Q8N2W9 510 aaPredicted RBP14.79□□□□□ -0.04
CDH13-206ENST00000562601 NISCHQ9Y2I1 1504 aa14□□□□□ -0.17
CDH13-206ENST00000562601 SCAF1Q9H7N4 1312 aaKnown RBP13.78□□□□□ -0.2
CDH13-206ENST00000562601 PPP4R3CPQ6ZMV5 832 aa13.75□□□□□ -0.21
CDH13-206ENST00000562601 MAPK8IP2Q13387 824 aaPredicted RBP13.61□□□□□ -0.23
CDH13-206ENST00000562601 DMRT2Q9Y5R5 561 aa13.56□□□□□ -0.24
CDH13-206ENST00000562601 NCBP3Q53F19 620 aaKnown RBP13.47□□□□□ -0.25
CDH13-206ENST00000562601 CNKSR2Q8WXI2 1034 aa13.43□□□□□ -0.26
CDH13-206ENST00000562601 KCNA4P22459 653 aa13.32□□□□□ -0.28
CDH13-206ENST00000562601 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
CDH13-206ENST00000562601 NPM3O75607 178 aaKnown RBP13.16□□□□□ -0.3
CDH13-206ENST00000562601 HOXD11P31277 338 aaPredicted RBP13.12□□□□□ -0.31
CDH13-206ENST00000562601 DNAJC5BQ9UF47 199 aa12.86□□□□□ -0.35
CDH13-206ENST00000562601 DCAF8L1A6NGE4 600 aa12.85□□□□□ -0.35
CDH13-206ENST00000562601 CACNB1Q02641 598 aaPredicted RBP12.82□□□□□ -0.36
CDH13-206ENST00000562601 RNF39Q9H2S5 420 aa12.8□□□□□ -0.36
CDH13-206ENST00000562601 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
CDH13-206ENST00000562601 C1QBPQ07021 282 aaKnown RBP12.55□□□□□ -0.4
CDH13-206ENST00000562601 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.53□□□□□ -0.4
CDH13-206ENST00000562601 CCDC180Q9P1Z9 1646 aa12.43□□□□□ -0.42
CDH13-206ENST00000562601 SLC4A2P04920 1241 aa12.41□□□□□ -0.42
CDH13-206ENST00000562601 FOXD4L1Q9NU39 408 aa12.35□□□□□ -0.43
CDH13-206ENST00000562601 U3KPZ7 1027 aaPredicted RBP12.26□□□□□ -0.45
CDH13-206ENST00000562601 ABCC9O60706 1549 aa12.26□□□□□ -0.45
CDH13-206ENST00000562601 EHMT2Q96KQ7 1210 aa12.25□□□□□ -0.45
CDH13-206ENST00000562601 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.23□□□□□ -0.45
CDH13-206ENST00000562601 MYCNP04198 464 aaPredicted RBP12.23□□□□□ -0.45
CDH13-206ENST00000562601 HNRNPUL2Q1KMD3 747 aaKnown RBP12.23□□□□□ -0.45
CDH13-206ENST00000562601 ZBTB22O15209 634 aa12.21□□□□□ -0.45
CDH13-206ENST00000562601 APLP2Q06481 763 aa12.15□□□□□ -0.46
CDH13-206ENST00000562601 SAMD1Q6SPF0 538 aaPredicted RBP12.14□□□□□ -0.47
CDH13-206ENST00000562601 CSRNP3Q8WYN3 585 aa12.12□□□□□ -0.47
CDH13-206ENST00000562601 ATXN8OSP0DMR3 200 aa11.97□□□□□ -0.49
CDH13-206ENST00000562601 SPINK5Q9NQ38 1064 aaPredicted RBP11.96□□□□□ -0.49
CDH13-206ENST00000562601 CAPN15O75808 1086 aa11.94□□□□□ -0.5
CDH13-206ENST00000562601 DSG3P32926 999 aa11.93□□□□□ -0.5
CDH13-206ENST00000562601 ZNF219Q9P2Y4 722 aaPredicted RBP11.92□□□□□ -0.5
CDH13-206ENST00000562601 TRHP20396 242 aaPredicted RBP11.85□□□□□ -0.51
CDH13-206ENST00000562601 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
CDH13-206ENST00000562601 ATF5Q9Y2D1 282 aaPredicted RBP11.78□□□□□ -0.52
CDH13-206ENST00000562601 RB1CC1Q8TDY2 1594 aa11.72□□□□□ -0.53
CDH13-206ENST00000562601 NACADO15069 1562 aa11.69□□□□□ -0.54
CDH13-206ENST00000562601 ABCB7O75027 752 aa11.66□□□□□ -0.54
CDH13-206ENST00000562601 ZCCHC6Q5VYS8 1495 aaKnown RBP11.64□□□□□ -0.55
CDH13-206ENST00000562601 POLA2Q14181 598 aa11.63□□□□□ -0.55
CDH13-206ENST00000562601 POTEHQ6S545 545 aa11.57□□□□□ -0.56
CDH13-206ENST00000562601 MYO15BQ96JP2 1530 aa11.55□□□□□ -0.56
CDH13-206ENST00000562601 ZBTB12Q9Y330 459 aaPredicted RBP11.55□□□□□ -0.56
CDH13-206ENST00000562601 UNC13AQ9UPW8 1703 aa11.53□□□□□ -0.56
CDH13-206ENST00000562601 DCAF1Q9Y4B6 1507 aa11.52□□□□□ -0.57
CDH13-206ENST00000562601 PABPN1Q86U42 306 aaKnown RBP eCLIP11.49□□□□□ -0.57
CDH13-206ENST00000562601 FBLN2P98095 1184 aa11.45□□□□□ -0.58
CDH13-206ENST00000562601 SCRIBQ14160 1630 aa11.42□□□□□ -0.58
CDH13-206ENST00000562601 BICRAQ9NZM4 1560 aa11.4□□□□□ -0.58
CDH13-206ENST00000562601 MKRN4PQ13434 485 aaPredicted RBP11.28□□□□□ -0.6
CDH13-206ENST00000562601 RBM42Q9BTD8 480 aaKnown RBP11.28□□□□□ -0.6
CDH13-206ENST00000562601 OSCARQ8IYS5 282 aa11.23□□□□□ -0.61
CDH13-206ENST00000562601 SPDYE2BA6NHP3 402 aa11.18□□□□□ -0.62
CDH13-206ENST00000562601 SPDYE6P0CI01 402 aa11.18□□□□□ -0.62
CDH13-206ENST00000562601 SPDYE2Q495Y8 402 aa11.18□□□□□ -0.62
CDH13-206ENST00000562601 SHROOM4Q9ULL8 1493 aa11.17□□□□□ -0.62
CDH13-206ENST00000562601 CHRDL2Q6WN34 429 aa11.13□□□□□ -0.63
CDH13-206ENST00000562601 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
CDH13-206ENST00000562601 EIF4G1Q04637 1599 aaKnown RBP11.08□□□□□ -0.64
CDH13-206ENST00000562601 SPDYE4A6NLX3 237 aa11.08□□□□□ -0.64
CDH13-206ENST00000562601 AKT1S1Q96B36 256 aa11.08□□□□□ -0.64
CDH13-206ENST00000562601 CC2D2AQ9P2K1 1620 aa11.06□□□□□ -0.64
CDH13-206ENST00000562601 SSUH2Q9Y2M2 353 aa11.05□□□□□ -0.64
CDH13-206ENST00000562601 FKBP8Q14318 412 aa11□□□□□ -0.65
CDH13-206ENST00000562601 CECR2Q9BXF3 1484 aa10.98□□□□□ -0.65
CDH13-206ENST00000562601 REM2Q8IYK8 340 aaPredicted RBP10.96□□□□□ -0.65
CDH13-206ENST00000562601 SMARCA4P51532 1647 aa10.88□□□□□ -0.67
CDH13-206ENST00000562601 PIP4P2Q8N4L2 257 aa10.87□□□□□ -0.67
CDH13-206ENST00000562601 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
CDH13-206ENST00000562601 PROM2Q8N271 834 aa10.86□□□□□ -0.67
CDH13-206ENST00000562601 PITPNM1O00562 1244 aa10.84□□□□□ -0.67
CDH13-206ENST00000562601 BAZ1AQ9NRL2 1556 aaPredicted RBP10.84□□□□□ -0.67
CDH13-206ENST00000562601 STAG3Q9UJ98 1225 aa10.83□□□□□ -0.68
CDH13-206ENST00000562601 MROH2BQ7Z745 1585 aa10.82□□□□□ -0.68
CDH13-206ENST00000562601 FXR2P51116 673 aaKnown RBP eCLIP10.82□□□□□ -0.68
CDH13-206ENST00000562601 ATAD2BQ9ULI0 1458 aa10.81□□□□□ -0.68
CDH13-206ENST00000562601 CLEC11AQ9Y240 323 aa10.79□□□□□ -0.68
CDH13-206ENST00000562601 SP7Q8TDD2 431 aaPredicted RBP10.78□□□□□ -0.68
CDH13-206ENST00000562601 NCAPD3P42695 1498 aa10.78□□□□□ -0.68
CDH13-206ENST00000562601 SMARCA2P51531 1590 aa10.77□□□□□ -0.68
CDH13-206ENST00000562601 WIZO95785 1651 aa10.74□□□□□ -0.69
CDH13-206ENST00000562601 BAZ1BQ9UIG0 1483 aaKnown RBP10.74□□□□□ -0.69
CDH13-206ENST00000562601 FBXO3Q9UK99 471 aa10.73□□□□□ -0.69
CDH13-206ENST00000562601 HMGXB3Q12766 1538 aa10.72□□□□□ -0.69
CDH13-206ENST00000562601 PEG3Q9GZU2 1588 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms