RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 HIRIP3Q9BW71 556 aaPredicted RBP13.57□□□□□ -0.24
SYNE2-213ENST00000554805 BCANQ96GW7 911 aa13.56□□□□□ -0.24
SYNE2-213ENST00000554805 HMGXB3Q12766 1538 aa13.56□□□□□ -0.24
SYNE2-213ENST00000554805 SETD5Q9C0A6 1442 aa13.55□□□□□ -0.24
SYNE2-213ENST00000554805 NESP48681 1621 aa13.55□□□□□ -0.24
SYNE2-213ENST00000554805 PHLDB1Q86UU1 1377 aa13.51□□□□□ -0.25
SYNE2-213ENST00000554805 CADPSQ9ULU8 1353 aa13.51□□□□□ -0.25
SYNE2-213ENST00000554805 FGD5Q6ZNL6 1462 aa13.48□□□□□ -0.25
SYNE2-213ENST00000554805 FHAD1B1AJZ9 1412 aa13.48□□□□□ -0.25
SYNE2-213ENST00000554805 NEFLP07196 543 aa13.47□□□□□ -0.25
SYNE2-213ENST00000554805 LRRC9Q6ZRR7 1453 aa13.47□□□□□ -0.25
SYNE2-213ENST00000554805 FKBP8Q14318 412 aa13.47□□□□□ -0.25
SYNE2-213ENST00000554805 ANP32CO43423 234 aa13.46□□□□□ -0.26
SYNE2-213ENST00000554805 FHOD3Q2V2M9 1422 aa13.46□□□□□ -0.26
SYNE2-213ENST00000554805 TIAM1Q13009 1591 aa13.46□□□□□ -0.26
SYNE2-213ENST00000554805 TRIM52Q96A61 297 aa13.44□□□□□ -0.26
SYNE2-213ENST00000554805 MAPKBP1O60336 1514 aa13.42□□□□□ -0.26
SYNE2-213ENST00000554805 TONSLQ96HA7 1378 aa13.42□□□□□ -0.26
SYNE2-213ENST00000554805 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
SYNE2-213ENST00000554805 PPP1R15AO75807 674 aaPredicted RBP13.41□□□□□ -0.26
SYNE2-213ENST00000554805 FBLN2P98095 1184 aa13.41□□□□□ -0.26
SYNE2-213ENST00000554805 MTUS2Q5JR59 1369 aa13.4□□□□□ -0.26
SYNE2-213ENST00000554805 ARID3CA6NKF2 412 aa13.39□□□□□ -0.27
SYNE2-213ENST00000554805 RAD54L2Q9Y4B4 1467 aa13.39□□□□□ -0.27
SYNE2-213ENST00000554805 WDR97A6NE52 1622 aa13.39□□□□□ -0.27
SYNE2-213ENST00000554805 TIMELESSQ9UNS1 1208 aa13.38□□□□□ -0.27
SYNE2-213ENST00000554805 FANCD2Q9BXW9 1451 aa13.38□□□□□ -0.27
SYNE2-213ENST00000554805 MAP3K1Q13233 1512 aa13.37□□□□□ -0.27
SYNE2-213ENST00000554805 PRDM2Q13029 1718 aa13.37□□□□□ -0.27
SYNE2-213ENST00000554805 TDRD9Q8NDG6 1382 aaKnown RBP13.36□□□□□ -0.27
SYNE2-213ENST00000554805 CHIC2Q9UKJ5 165 aa13.34□□□□□ -0.27
SYNE2-213ENST00000554805 PCF11O94913 1555 aaKnown RBP13.34□□□□□ -0.27
SYNE2-213ENST00000554805 RRP7BPQ9NSQ0 103 aa13.32□□□□□ -0.28
SYNE2-213ENST00000554805 CCER2I3L3R5 266 aa13.31□□□□□ -0.28
SYNE2-213ENST00000554805 CASKIN1Q8WXD9 1431 aa13.3□□□□□ -0.28
SYNE2-213ENST00000554805 FMN1Q68DA7 1419 aa13.29□□□□□ -0.28
SYNE2-213ENST00000554805 FGD6Q6ZV73 1430 aa13.29□□□□□ -0.28
SYNE2-213ENST00000554805 FYCO1Q9BQS8 1478 aa13.28□□□□□ -0.28
SYNE2-213ENST00000554805 HNRNPUQ00839 825 aaKnown RBP eCLIP13.28□□□□□ -0.28
SYNE2-213ENST00000554805 POLA1P09884 1462 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-213ENST00000554805 CCDC18Q5T9S5 1454 aa13.27□□□□□ -0.29
SYNE2-213ENST00000554805 ERCC6Q03468 1493 aa13.25□□□□□ -0.29
SYNE2-213ENST00000554805 TOPBP1Q92547 1522 aa13.25□□□□□ -0.29
SYNE2-213ENST00000554805 IRX6P78412 446 aaPredicted RBP13.24□□□□□ -0.29
SYNE2-213ENST00000554805 ABCA10Q8WWZ4 1543 aa13.24□□□□□ -0.29
SYNE2-213ENST00000554805 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
SYNE2-213ENST00000554805 ANP32EQ9BTT0 268 aa13.23□□□□□ -0.29
SYNE2-213ENST00000554805 EFCAB5A4FU69 1503 aa13.23□□□□□ -0.29
SYNE2-213ENST00000554805 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.22□□□□□ -0.29
SYNE2-213ENST00000554805 CFAP43Q8NDM7 1665 aa13.22□□□□□ -0.29
SYNE2-213ENST00000554805 DNMBPQ6XZF7 1577 aa13.22□□□□□ -0.29
SYNE2-213ENST00000554805 UACAQ9BZF9 1416 aa13.21□□□□□ -0.29
SYNE2-213ENST00000554805 PTPRKQ15262 1439 aa13.21□□□□□ -0.29
SYNE2-213ENST00000554805 HSPA5P11021 654 aaKnown RBP13.21□□□□□ -0.3
SYNE2-213ENST00000554805 CNGB1Q14028 1251 aaPredicted RBP13.21□□□□□ -0.3
SYNE2-213ENST00000554805 AQRO60306 1485 aaKnown RBP eCLIP13.2□□□□□ -0.3
SYNE2-213ENST00000554805 NCOA2Q15596 1464 aa13.19□□□□□ -0.3
SYNE2-213ENST00000554805 HFM1A2PYH4 1435 aa13.19□□□□□ -0.3
SYNE2-213ENST00000554805 EIF4G2P78344 907 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNE2-213ENST00000554805 FOXD1Q16676 465 aa13.19□□□□□ -0.3
SYNE2-213ENST00000554805 MYOM3Q5VTT5 1437 aa13.18□□□□□ -0.3
SYNE2-213ENST00000554805 RBM19Q9Y4C8 960 aaKnown RBP13.18□□□□□ -0.3
SYNE2-213ENST00000554805 NAIPQ13075 1403 aa13.17□□□□□ -0.3
SYNE2-213ENST00000554805 POLR3GLQ9BT43 218 aa13.16□□□□□ -0.3
SYNE2-213ENST00000554805 FAM9BQ8IZU0 186 aa13.16□□□□□ -0.3
SYNE2-213ENST00000554805 GAPVD1Q14C86 1478 aa13.15□□□□□ -0.3
SYNE2-213ENST00000554805 MPHOSPH9Q99550 1183 aa13.14□□□□□ -0.31
SYNE2-213ENST00000554805 CDK11AQ9UQ88 783 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-213ENST00000554805 SNAPC4Q5SXM2 1469 aa13.13□□□□□ -0.31
SYNE2-213ENST00000554805 L3MBTL2Q969R5 705 aa13.13□□□□□ -0.31
SYNE2-213ENST00000554805 CUL7Q14999 1698 aa13.13□□□□□ -0.31
SYNE2-213ENST00000554805 WASHC2AQ641Q2 1341 aa13.12□□□□□ -0.31
SYNE2-213ENST00000554805 PTPN23Q9H3S7 1636 aa13.12□□□□□ -0.31
SYNE2-213ENST00000554805 URB2Q14146 1524 aaKnown RBP13.12□□□□□ -0.31
SYNE2-213ENST00000554805 CHMP7Q8WUX9 453 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-213ENST00000554805 MRS2Q9HD23 443 aa13.11□□□□□ -0.31
SYNE2-213ENST00000554805 ERICH6Q7L0X2 663 aa13.11□□□□□ -0.31
SYNE2-213ENST00000554805 ZNF326Q5BKZ1 582 aaKnown RBP13.1□□□□□ -0.31
SYNE2-213ENST00000554805 SLC4A1APQ9BWU0 796 aaKnown RBP13.08□□□□□ -0.31
SYNE2-213ENST00000554805 CTTNBP2Q8WZ74 1663 aa13.08□□□□□ -0.32
SYNE2-213ENST00000554805 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
SYNE2-213ENST00000554805 CCDC184Q52MB2 194 aa13.07□□□□□ -0.32
SYNE2-213ENST00000554805 EHBP1L1Q8N3D4 1523 aa13.06□□□□□ -0.32
SYNE2-213ENST00000554805 ZNF777Q9ULD5 760 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-213ENST00000554805 SUPT6HQ7KZ85 1726 aaKnown RBP13.06□□□□□ -0.32
SYNE2-213ENST00000554805 POLR1AO95602 1720 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-213ENST00000554805 C11orf95C9JLR9 678 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-213ENST00000554805 LAMC3Q9Y6N6 1575 aa13.03□□□□□ -0.32
SYNE2-213ENST00000554805 PRKRIP1Q9H875 184 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-213ENST00000554805 ZNF644Q9H582 1327 aaPredicted RBP13.02□□□□□ -0.32
SYNE2-213ENST00000554805 SENP3-EIF4A1A0A087X0R7 540 aa13.01□□□□□ -0.33
SYNE2-213ENST00000554805 NBPF8Q3BBV2 869 aa13.01□□□□□ -0.33
SYNE2-213ENST00000554805 KIF21AQ7Z4S6 1674 aa13.01□□□□□ -0.33
SYNE2-213ENST00000554805 UGGT2Q9NYU1 1516 aa13.01□□□□□ -0.33
SYNE2-213ENST00000554805 PPP4R2Q9NY27 417 aa13.01□□□□□ -0.33
SYNE2-213ENST00000554805 CDK13Q14004 1512 aaKnown RBP13□□□□□ -0.33
SYNE2-213ENST00000554805 CCDC7Q96M83 1385 aa13□□□□□ -0.33
SYNE2-213ENST00000554805 SAMD9Q5K651 1589 aa13□□□□□ -0.33
SYNE2-213ENST00000554805 ZNF608Q9ULD9 1512 aaPredicted RBP13□□□□□ -0.33
SYNE2-213ENST00000554805 CNTLNQ9NXG0 1405 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms