RNA–Protein interactions for RNA: ENST00000553498.5

ATXN3-221, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 911 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-221ENST00000553498 PIP4P2Q8N4L2 257 aa11.9□□□□□ -0.5
ATXN3-221ENST00000553498 EEA1Q15075 1411 aa11.84□□□□□ -0.51
ATXN3-221ENST00000553498 WRNQ14191 1432 aaPredicted RBP eCLIP11.82□□□□□ -0.52
ATXN3-221ENST00000553498 PRR29P0C7W0 189 aa11.81□□□□□ -0.52
ATXN3-221ENST00000553498 STAG3Q9UJ98 1225 aa11.81□□□□□ -0.52
ATXN3-221ENST00000553498 CFTRP13569 1480 aa11.8□□□□□ -0.52
ATXN3-221ENST00000553498 CC2D2AQ9P2K1 1620 aa11.76□□□□□ -0.53
ATXN3-221ENST00000553498 ABCC8Q09428 1581 aa11.75□□□□□ -0.53
ATXN3-221ENST00000553498 LOC105371045A0A1W2PR82 267 aa11.74□□□□□ -0.53
ATXN3-221ENST00000553498 PRKAR2AP13861 404 aaKnown RBP11.74□□□□□ -0.53
ATXN3-221ENST00000553498 CADPSQ9ULU8 1353 aa11.73□□□□□ -0.53
ATXN3-221ENST00000553498 CHADLQ6NUI6 762 aa11.72□□□□□ -0.53
ATXN3-221ENST00000553498 CREBZFQ9NS37 354 aa11.69□□□□□ -0.54
ATXN3-221ENST00000553498 FAM9AQ8IZU1 332 aaPredicted RBP11.68□□□□□ -0.54
ATXN3-221ENST00000553498 TOP2BQ02880 1626 aa11.67□□□□□ -0.54
ATXN3-221ENST00000553498 SYNJ1O43426 1573 aa11.66□□□□□ -0.54
ATXN3-221ENST00000553498 SOGA1O94964 1423 aa11.64□□□□□ -0.55
ATXN3-221ENST00000553498 SP7Q8TDD2 431 aaPredicted RBP11.63□□□□□ -0.55
ATXN3-221ENST00000553498 BIVM-ERCC5R4GMW8 1640 aa11.63□□□□□ -0.55
ATXN3-221ENST00000553498 TNIKQ9UKE5 1360 aa11.61□□□□□ -0.55
ATXN3-221ENST00000553498 GOLGA3Q08378 1498 aa11.59□□□□□ -0.55
ATXN3-221ENST00000553498 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
ATXN3-221ENST00000553498 MNX1P50219 401 aaPredicted RBP11.59□□□□□ -0.55
ATXN3-221ENST00000553498 FARP1Q9Y4F1 1045 aaPredicted RBP11.58□□□□□ -0.56
ATXN3-221ENST00000553498 CUX1P39880 1505 aa11.57□□□□□ -0.56
ATXN3-221ENST00000553498 LAMC3Q9Y6N6 1575 aa11.57□□□□□ -0.56
ATXN3-221ENST00000553498 FANCD2Q9BXW9 1451 aa11.56□□□□□ -0.56
ATXN3-221ENST00000553498 KIF27Q86VH2 1401 aa11.55□□□□□ -0.56
ATXN3-221ENST00000553498 PRDM2Q13029 1718 aa11.55□□□□□ -0.56
ATXN3-221ENST00000553498 KIF21BO75037 1637 aa11.54□□□□□ -0.56
ATXN3-221ENST00000553498 FBXO3Q9UK99 471 aa11.54□□□□□ -0.56
ATXN3-221ENST00000553498 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
ATXN3-221ENST00000553498 RUSC2Q8N2Y8 1516 aa11.53□□□□□ -0.56
ATXN3-221ENST00000553498 C19orf67A6NJJ6 358 aa11.52□□□□□ -0.57
ATXN3-221ENST00000553498 HAX1O00165 279 aa11.52□□□□□ -0.57
ATXN3-221ENST00000553498 EVX2Q03828 476 aa11.52□□□□□ -0.57
ATXN3-221ENST00000553498 TRIM26Q12899 539 aaPredicted RBP11.49□□□□□ -0.57
ATXN3-221ENST00000553498 MIER1Q8N108 512 aa11.49□□□□□ -0.57
ATXN3-221ENST00000553498 CEP162Q5TB80 1403 aa11.49□□□□□ -0.57
ATXN3-221ENST00000553498 PRXQ9BXM0 1461 aa11.49□□□□□ -0.57
ATXN3-221ENST00000553498 ERICH3Q5RHP9 1530 aa11.49□□□□□ -0.57
ATXN3-221ENST00000553498 UBTFP17480 764 aaKnown RBP11.48□□□□□ -0.57
ATXN3-221ENST00000553498 DNMBPQ6XZF7 1577 aa11.47□□□□□ -0.57
ATXN3-221ENST00000553498 FGD5Q6ZNL6 1462 aa11.44□□□□□ -0.58
ATXN3-221ENST00000553498 VASPP50552 380 aaPredicted RBP11.43□□□□□ -0.58
ATXN3-221ENST00000553498 TOPBP1Q92547 1522 aa11.43□□□□□ -0.58
ATXN3-221ENST00000553498 PLCD3Q8N3E9 789 aa11.42□□□□□ -0.58
ATXN3-221ENST00000553498 NESP48681 1621 aa11.42□□□□□ -0.58
ATXN3-221ENST00000553498 ABCA10Q8WWZ4 1543 aa11.41□□□□□ -0.58
ATXN3-221ENST00000553498 CUX2O14529 1486 aa11.41□□□□□ -0.58
ATXN3-221ENST00000553498 RAPGEF2Q9Y4G8 1499 aa11.41□□□□□ -0.58
ATXN3-221ENST00000553498 IGF1RP08069 1367 aa11.41□□□□□ -0.58
ATXN3-221ENST00000553498 PCGF6Q9BYE7 350 aa11.4□□□□□ -0.58
ATXN3-221ENST00000553498 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
ATXN3-221ENST00000553498 POLA1P09884 1462 aaPredicted RBP11.38□□□□□ -0.59
ATXN3-221ENST00000553498 CLIP1P30622 1438 aa11.38□□□□□ -0.59
ATXN3-221ENST00000553498 CD44P16070 742 aaKnown RBP11.38□□□□□ -0.59
ATXN3-221ENST00000553498 PLEKHG5O94827 1062 aa11.37□□□□□ -0.59
ATXN3-221ENST00000553498 URB2Q14146 1524 aaKnown RBP11.35□□□□□ -0.59
ATXN3-221ENST00000553498 CARMIL1Q5VZK9 1371 aa11.34□□□□□ -0.59
ATXN3-221ENST00000553498 VPS8Q8N3P4 1428 aa11.33□□□□□ -0.6
ATXN3-221ENST00000553498 IFNLR1Q8IU57 520 aaPredicted RBP11.32□□□□□ -0.6
ATXN3-221ENST00000553498 MRC2Q9UBG0 1479 aa11.32□□□□□ -0.6
ATXN3-221ENST00000553498 NUBP1P53384 320 aa11.31□□□□□ -0.6
ATXN3-221ENST00000553498 ZBTB47Q9UFB7 747 aaPredicted RBP11.31□□□□□ -0.6
ATXN3-221ENST00000553498 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
ATXN3-221ENST00000553498 RAD54L2Q9Y4B4 1467 aa11.29□□□□□ -0.6
ATXN3-221ENST00000553498 ZRANB1Q9UGI0 708 aa11.28□□□□□ -0.6
ATXN3-221ENST00000553498 CUL7Q14999 1698 aa11.27□□□□□ -0.61
ATXN3-221ENST00000553498 HRCP23327 699 aa11.26□□□□□ -0.61
ATXN3-221ENST00000553498 ZNF579Q8NAF0 562 aaKnown RBP11.26□□□□□ -0.61
ATXN3-221ENST00000553498 GAPVD1Q14C86 1478 aa11.25□□□□□ -0.61
ATXN3-221ENST00000553498 WDR97A6NE52 1622 aa11.25□□□□□ -0.61
ATXN3-221ENST00000553498 WDR62O43379 1518 aa11.25□□□□□ -0.61
ATXN3-221ENST00000553498 IFT140Q96RY7 1462 aa11.24□□□□□ -0.61
ATXN3-221ENST00000553498 ABCA5Q8WWZ7 1642 aa11.24□□□□□ -0.61
ATXN3-221ENST00000553498 GABBR2O75899 941 aa11.23□□□□□ -0.61
ATXN3-221ENST00000553498 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
ATXN3-221ENST00000553498 CCDC61Q9Y6R9 512 aa11.22□□□□□ -0.61
ATXN3-221ENST00000553498 KIF21AQ7Z4S6 1674 aa11.21□□□□□ -0.61
ATXN3-221ENST00000553498 PAK3O75914 559 aaPredicted RBP11.21□□□□□ -0.61
ATXN3-221ENST00000553498 KLHL34Q8N239 644 aa11.21□□□□□ -0.61
ATXN3-221ENST00000553498 TARBP1Q13395 1621 aaKnown RBP11.2□□□□□ -0.62
ATXN3-221ENST00000553498 ARAP1Q96P48 1450 aa11.2□□□□□ -0.62
ATXN3-221ENST00000553498 TDRD9Q8NDG6 1382 aaKnown RBP11.2□□□□□ -0.62
ATXN3-221ENST00000553498 ZEB1P37275 1124 aaPredicted RBP11.2□□□□□ -0.62
ATXN3-221ENST00000553498 ERCC6Q03468 1493 aa11.19□□□□□ -0.62
ATXN3-221ENST00000553498 ARHGAP35Q9NRY4 1499 aa11.19□□□□□ -0.62
ATXN3-221ENST00000553498 PHF12Q96QT6 1004 aa11.19□□□□□ -0.62
ATXN3-221ENST00000553498 EFCAB5A4FU69 1503 aa11.19□□□□□ -0.62
ATXN3-221ENST00000553498 FHAD1B1AJZ9 1412 aa11.18□□□□□ -0.62
ATXN3-221ENST00000553498 GRIN2BQ13224 1484 aa11.18□□□□□ -0.62
ATXN3-221ENST00000553498 MAP3K1Q13233 1512 aa11.17□□□□□ -0.62
ATXN3-221ENST00000553498 CLCN6P51797 869 aa11.15□□□□□ -0.62
ATXN3-221ENST00000553498 SPOCK2Q92563 424 aa11.14□□□□□ -0.63
ATXN3-221ENST00000553498 AQRO60306 1485 aaKnown RBP eCLIP11.12□□□□□ -0.63
ATXN3-221ENST00000553498 FAM212AQ96EL1 285 aa11.12□□□□□ -0.63
ATXN3-221ENST00000553498 FMN1Q68DA7 1419 aa11.11□□□□□ -0.63
ATXN3-221ENST00000553498 RANGAP1P46060 587 aaPredicted RBP11.11□□□□□ -0.63
ATXN3-221ENST00000553498 KIF12Q96FN5 646 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms